data_UR3
# 
_chem_comp.id                                    UR3 
_chem_comp.name                                  "3-METHYLURIDINE-5'-MONOPHOSHATE" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H15 N2 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               U 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2004-03-17 
_chem_comp.pdbx_modified_date                    2011-12-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         3MU 
_chem_comp.formula_weight                        338.208 
_chem_comp.one_letter_code                       U 
_chem_comp.three_letter_code                     UR3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1S72 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UR3 P      P      P 0 1 N N N 83.450 123.847 103.670 -4.415 1.039  -0.133 P      UR3 1  
UR3 OP1    O1P    O 0 1 N N N 84.632 122.966 103.596 -5.489 0.102  0.264  OP1    UR3 2  
UR3 OP2    O2P    O 0 1 N N N 83.358 125.029 102.775 -4.087 2.030  1.093  OP2    UR3 3  
UR3 "O5'"  "O5'"  O 0 1 N N N 82.146 122.943 103.494 -3.092 0.207  -0.518 "O5'"  UR3 4  
UR3 "C5'"  "C5'"  C 0 1 N N N 82.010 121.689 104.212 -2.480 -0.735 0.365  "C5'"  UR3 5  
UR3 "C4'"  "C4'"  C 0 1 N N R 80.681 121.011 103.896 -1.249 -1.343 -0.311 "C4'"  UR3 6  
UR3 "O4'"  "O4'"  O 0 1 N N N 79.562 121.808 104.369 -0.242 -0.333 -0.493 "O4'"  UR3 7  
UR3 "C1'"  "C1'"  C 0 1 N N R 78.423 121.548 103.558 1.038  -0.982 -0.338 "C1'"  UR3 8  
UR3 N1     N1     N 0 1 N N N 77.927 122.815 103.002 2.075  -0.004 -0.002 N1     UR3 9  
UR3 C6     C6     C 0 1 N N N 78.670 123.968 103.070 1.895  0.836  1.064  C6     UR3 10 
UR3 C2     C2     C 0 1 N N N 76.675 122.810 102.411 3.198  0.058  -0.740 C2     UR3 11 
UR3 O2     O2     O 0 1 N N N 75.997 121.793 102.303 3.339  -0.701 -1.680 O2     UR3 12 
UR3 N3     N3     N 0 1 N N N 76.251 124.033 101.938 4.167  0.947  -0.454 N3     UR3 13 
UR3 C3U    C3U    C 0 1 N N N 74.884 124.081 101.356 5.379  0.994  -1.274 C3U    UR3 14 
UR3 C4     C4     C 0 1 N N N 76.955 125.226 101.976 4.025  1.796  0.584  C4     UR3 15 
UR3 O4     O4     O 0 1 N N N 76.478 126.242 101.461 4.900  2.602  0.843  O4     UR3 16 
UR3 C5     C5     C 0 1 N N N 78.240 125.136 102.591 2.851  1.738  1.373  C5     UR3 17 
UR3 "C2'"  "C2'"  C 0 1 N N R 78.844 120.548 102.483 0.807  -1.960 0.842  "C2'"  UR3 18 
UR3 "O2'"  "O2'"  O 0 1 N N N 78.525 119.241 102.913 1.722  -3.056 0.783  "O2'"  UR3 19 
UR3 "C3'"  "C3'"  C 0 1 N N S 80.344 120.786 102.434 -0.644 -2.437 0.590  "C3'"  UR3 20 
UR3 "O3'"  "O3'"  O 0 1 N N N 81.004 119.655 101.924 -0.646 -3.697 -0.084 "O3'"  UR3 21 
UR3 OP3    O3P    O 0 1 N Y N ?      ?       ?       -4.897 1.901  -1.405 OP3    UR3 22 
UR3 HOP2   HOP2   H 0 0 N N N 84.132 125.072 102.225 -3.390 2.673  0.904  HOP2   UR3 23 
UR3 "H5'"  "H5'1" H 0 1 N N N 82.832 121.019 103.921 -2.178 -0.229 1.282  "H5'"  UR3 24 
UR3 "H5''" "H5'2" H 0 0 N N N 82.063 121.887 105.293 -3.191 -1.525 0.603  "H5''" UR3 25 
UR3 "H4'"  "H4'"  H 0 1 N N N 80.666 120.036 104.405 -1.528 -1.766 -1.276 "H4'"  UR3 26 
UR3 "H1'"  "H1'"  H 0 1 N N N 77.631 121.088 104.167 1.305  -1.527 -1.244 "H1'"  UR3 27 
UR3 H6     H6     H 0 1 N N N 79.645 123.927 103.532 0.993  0.777  1.654  H6     UR3 28 
UR3 H3U1   H3U1   H 0 0 N N N 74.665 125.104 101.017 5.234  1.692  -2.099 H3U1   UR3 29 
UR3 H3U2   H3U2   H 0 0 N N N 74.825 123.391 100.501 6.219  1.325  -0.663 H3U2   UR3 30 
UR3 H3U3   H3U3   H 0 0 N N N 74.150 123.783 102.119 5.588  0.001  -1.671 H3U3   UR3 31 
UR3 H5     H5     H 0 1 N N N 78.864 126.014 102.668 2.721  2.407  2.212  H5     UR3 32 
UR3 "H2'"  "H2'"  H 0 1 N N N 78.378 120.797 101.518 0.886  -1.442 1.798  "H2'"  UR3 33 
UR3 "HO2'" "HO'2" H 0 0 N N N 78.785 118.616 102.247 1.617  -3.696 1.501  "HO2'" UR3 34 
UR3 "H3'"  "H3'"  H 0 1 N N N 80.566 121.690 101.849 -1.192 -2.504 1.529  "H3'"  UR3 35 
UR3 "HO3'" H3T    H 0 0 N Y N 80.775 119.539 101.009 -0.275 -4.422 0.437  "HO3'" UR3 36 
UR3 HOP3   HOP3   H 0 0 N N N -0.760 0.567   0.047   -5.691 2.429  -1.244 HOP3   UR3 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UR3 P     OP1    DOUB N N 1  
UR3 P     OP2    SING N N 2  
UR3 P     "O5'"  SING N N 3  
UR3 P     OP3    SING N N 4  
UR3 OP2   HOP2   SING N N 5  
UR3 "O5'" "C5'"  SING N N 6  
UR3 "C5'" "C4'"  SING N N 7  
UR3 "C5'" "H5'"  SING N N 8  
UR3 "C5'" "H5''" SING N N 9  
UR3 "C4'" "O4'"  SING N N 10 
UR3 "C4'" "C3'"  SING N N 11 
UR3 "C4'" "H4'"  SING N N 12 
UR3 "O4'" "C1'"  SING N N 13 
UR3 "C1'" N1     SING N N 14 
UR3 "C1'" "C2'"  SING N N 15 
UR3 "C1'" "H1'"  SING N N 16 
UR3 N1    C6     SING N N 17 
UR3 N1    C2     SING N N 18 
UR3 C6    C5     DOUB N N 19 
UR3 C6    H6     SING N N 20 
UR3 C2    O2     DOUB N N 21 
UR3 C2    N3     SING N N 22 
UR3 N3    C3U    SING N N 23 
UR3 N3    C4     SING N N 24 
UR3 C3U   H3U1   SING N N 25 
UR3 C3U   H3U2   SING N N 26 
UR3 C3U   H3U3   SING N N 27 
UR3 C4    O4     DOUB N N 28 
UR3 C4    C5     SING N N 29 
UR3 C5    H5     SING N N 30 
UR3 "C2'" "O2'"  SING N N 31 
UR3 "C2'" "C3'"  SING N N 32 
UR3 "C2'" "H2'"  SING N N 33 
UR3 "O2'" "HO2'" SING N N 34 
UR3 "C3'" "O3'"  SING N N 35 
UR3 "C3'" "H3'"  SING N N 36 
UR3 "O3'" "HO3'" SING N N 37 
UR3 OP3   HOP3   SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UR3 SMILES           ACDLabs              12.01 "O=P(O)(O)OCC2OC(N1C(=O)N(C(=O)C=C1)C)C(O)C2O"                                                                                                   
UR3 InChI            InChI                1.03  "InChI=1S/C10H15N2O9P/c1-11-6(13)2-3-12(10(11)16)9-8(15)7(14)5(21-9)4-20-22(17,18)19/h2-3,5,7-9,14-15H,4H2,1H3,(H2,17,18,19)/t5-,7-,8-,9-/m1/s1" 
UR3 InChIKey         InChI                1.03  KZSHODFDDQCIMT-ZOQUXTDFSA-N                                                                                                                      
UR3 SMILES_CANONICAL CACTVS               3.370 "CN1C(=O)C=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C1=O"                                                                                 
UR3 SMILES           CACTVS               3.370 "CN1C(=O)C=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C1=O"                                                                                       
UR3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CN1C(=O)C=CN(C1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O"                                                                                 
UR3 SMILES           "OpenEye OEToolkits" 1.7.6 "CN1C(=O)C=CN(C1=O)C2C(C(C(O2)COP(=O)(O)O)O)O"                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
UR3 "SYSTEMATIC NAME" ACDLabs              12.01 
;3-methyluridine 5'-(dihydrogen phosphate)
;
UR3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-[3-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UR3 "Create component"   2004-03-17 PDBJ 
UR3 "Modify descriptor"  2011-06-04 RCSB 
UR3 "Other modification" 2011-12-06 RCSB 
# 
