data_UM3
# 
_chem_comp.id                                    UM3 
_chem_comp.name                                  
;2'-DEOXYURIDINE 3'-MONOPHOSPHATE
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H13 N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        308.182 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UM3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2RNF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UM3 N1     N1   N 0 1 Y N N -2.978 25.955 12.116 0.194  0.664  -2.247 N1     UM3 1  
UM3 C2     C2   C 0 1 Y N N -3.579 24.903 11.427 -0.328 -0.575 -2.262 C2     UM3 2  
UM3 N3     N3   N 0 1 Y N N -2.707 24.069 10.777 -0.821 -1.104 -3.398 N3     UM3 3  
UM3 C4     C4   C 0 1 Y N N -1.334 24.164 10.731 -0.787 -0.399 -4.547 C4     UM3 4  
UM3 C5     C5   C 0 1 Y N N -0.785 25.256 11.478 -0.234 0.904  -4.546 C5     UM3 5  
UM3 C6     C6   C 0 1 Y N N -1.602 26.096 12.119 0.247  1.412  -3.392 C6     UM3 6  
UM3 O2     O2   O 0 1 N N N -4.788 24.707 11.407 -0.366 -1.222 -1.234 O2     UM3 7  
UM3 O4     O4   O 0 1 N N N -0.701 23.378 10.024 -1.228 -0.878 -5.575 O4     UM3 8  
UM3 "C1'"  C1*  C 0 1 N N R -3.843 26.919 12.825 0.718  1.215  -0.995 "C1'"  UM3 9  
UM3 "C2'"  C2*  C 0 1 N N N -4.014 26.539 14.291 -0.397 1.266  0.065  "C2'"  UM3 10 
UM3 "C3'"  C3*  C 0 1 N N S -3.805 27.827 15.069 0.146  0.408  1.235  "C3'"  UM3 11 
UM3 "C4'"  C4*  C 0 1 N N R -3.003 28.721 14.123 1.671  0.415  0.957  "C4'"  UM3 12 
UM3 "O3'"  O3*  O 0 1 N N N -5.048 28.417 15.463 -0.151 1.013  2.494  "O3'"  UM3 13 
UM3 "O4'"  O4*  O 0 1 N N N -3.207 28.198 12.786 1.756  0.362  -0.482 "O4'"  UM3 14 
UM3 "C5'"  C5*  C 0 1 N N N -1.523 28.763 14.435 2.339  -0.811 1.582  "C5'"  UM3 15 
UM3 "O5'"  O5*  O 0 1 N N N -1.007 27.438 14.583 3.733  -0.805 1.269  "O5'"  UM3 16 
UM3 P      P    P 0 1 N N N -5.707 28.008 16.874 -1.019 -0.054 3.330  P      UM3 17 
UM3 O1P    O1P  O 0 1 N N N -6.547 26.813 16.620 -0.230 -1.293 3.516  O1P    UM3 18 
UM3 O2P    O2P  O 0 1 N N N -6.314 29.212 17.500 -1.392 0.565  4.768  O2P    UM3 19 
UM3 O3P    O3P  O 0 1 N N N -4.473 27.555 17.776 -2.371 -0.394 2.525  O3P    UM3 20 
UM3 HN3    HN3  H 0 1 N N N -3.127 23.289 10.270 -1.199 -1.997 -3.390 HN3    UM3 21 
UM3 H5     H5   H 0 1 N N N 0.296  25.455 11.561 -0.199 1.484  -5.456 H5     UM3 22 
UM3 H6     H6   H 0 1 N N N -1.127 26.928 12.665 0.673  2.404  -3.372 H6     UM3 23 
UM3 "H1'"  H1*  H 0 1 N N N -4.842 26.926 12.330 1.112  2.216  -1.167 "H1'"  UM3 24 
UM3 "H2'1" 1H2* H 0 0 N N N -4.982 26.032 14.513 -0.564 2.292  0.394  "H2'1" UM3 25 
UM3 "H2'2" 2H2* H 0 0 N N N -3.351 25.704 14.618 -1.318 0.837  -0.328 "H2'2" UM3 26 
UM3 "H3'"  H3*  H 0 1 N N N -3.264 27.659 16.029 -0.248 -0.606 1.189  "H3'"  UM3 27 
UM3 "H4'"  H4*  H 0 1 N N N -3.361 29.771 14.234 2.125  1.332  1.335  "H4'"  UM3 28 
UM3 "H5'1" 1H5* H 0 0 N N N -0.954 29.347 13.674 1.880  -1.716 1.183  "H5'1" UM3 29 
UM3 "H5'2" 2H5* H 0 0 N N N -1.304 29.395 15.326 2.209  -0.784 2.664  "H5'2" UM3 30 
UM3 "HO5'" *HO5 H 0 0 N N N -0.077 27.464 14.778 4.115  -1.593 1.680  "HO5'" UM3 31 
UM3 HOP2   2HOP H 0 0 N N N -6.702 28.970 18.332 -1.910 -0.104 5.235  HOP2   UM3 32 
UM3 HOP3   3HOP H 0 0 N N N -4.861 27.313 18.608 -2.854 0.437  2.425  HOP3   UM3 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UM3 N1    C2     SING Y N 1  
UM3 N1    C6     SING Y N 2  
UM3 N1    "C1'"  SING N N 3  
UM3 C2    N3     SING Y N 4  
UM3 C2    O2     DOUB N N 5  
UM3 N3    C4     SING Y N 6  
UM3 N3    HN3    SING N N 7  
UM3 C4    C5     SING Y N 8  
UM3 C4    O4     DOUB N N 9  
UM3 C5    C6     DOUB Y N 10 
UM3 C5    H5     SING N N 11 
UM3 C6    H6     SING N N 12 
UM3 "C1'" "C2'"  SING N N 13 
UM3 "C1'" "O4'"  SING N N 14 
UM3 "C1'" "H1'"  SING N N 15 
UM3 "C2'" "C3'"  SING N N 16 
UM3 "C2'" "H2'1" SING N N 17 
UM3 "C2'" "H2'2" SING N N 18 
UM3 "C3'" "C4'"  SING N N 19 
UM3 "C3'" "O3'"  SING N N 20 
UM3 "C3'" "H3'"  SING N N 21 
UM3 "C4'" "O4'"  SING N N 22 
UM3 "C4'" "C5'"  SING N N 23 
UM3 "C4'" "H4'"  SING N N 24 
UM3 "O3'" P      SING N N 25 
UM3 "C5'" "O5'"  SING N N 26 
UM3 "C5'" "H5'1" SING N N 27 
UM3 "C5'" "H5'2" SING N N 28 
UM3 "O5'" "HO5'" SING N N 29 
UM3 P     O1P    DOUB N N 30 
UM3 P     O2P    SING N N 31 
UM3 P     O3P    SING N N 32 
UM3 O2P   HOP2   SING N N 33 
UM3 O3P   HOP3   SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UM3 SMILES           ACDLabs              10.04 "O=C1NC(=O)N(C=C1)C2OC(C(OP(=O)(O)O)C2)CO"                                                                                                    
UM3 SMILES_CANONICAL CACTVS               3.341 "OC[C@H]1O[C@H](C[C@@H]1O[P](O)(O)=O)N2C=CC(=O)NC2=O"                                                                                         
UM3 SMILES           CACTVS               3.341 "OC[CH]1O[CH](C[CH]1O[P](O)(O)=O)N2C=CC(=O)NC2=O"                                                                                             
UM3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)CO)OP(=O)(O)O"                                                                                         
UM3 SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=CC(=O)NC2=O)CO)OP(=O)(O)O"                                                                                                      
UM3 InChI            InChI                1.03  "InChI=1S/C9H13N2O8P/c12-4-6-5(19-20(15,16)17)3-8(18-6)11-2-1-7(13)10-9(11)14/h1-2,5-6,8,12H,3-4H2,(H,10,13,14)(H2,15,16,17)/t5-,6+,8+/m0/s1" 
UM3 InChIKey         InChI                1.03  LXKGKXYIAAKOCT-SHYZEUOFSA-N                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
UM3 "SYSTEMATIC NAME" ACDLabs              10.04 
;2'-deoxy-3'-uridylic acid
;
UM3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(2,4-dioxopyrimidin-1-yl)-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UM3 "Create component"  1999-07-08 RCSB 
UM3 "Modify descriptor" 2011-06-04 RCSB 
# 
