data_UA3
#

_chem_comp.id                                   UA3
_chem_comp.name                                 "URACIL ARABINOSE-3'-PHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H13 N2 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "1-(3-O-PHOSPHONO-BETA-L-ARABINOFURANOSYL)PYRIMIDINE-2,4(1H,3H)-DIONE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-07-27
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       324.181
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    UA3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1W4O
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UA3  N1     N1   N  0  1  Y  N  N  36.503  -2.084  11.711  -0.022   0.351  -2.199  N1     UA3   1  
UA3  C2     C2   C  0  1  Y  N  N  35.210  -2.157  11.115  -1.119   0.709  -2.891  C2     UA3   2  
UA3  O2     O2   O  0  1  N  N  N  34.738  -1.253  10.524  -1.988   1.359  -2.343  O2     UA3   3  
UA3  N3     N3   N  0  1  Y  N  N  34.584  -3.397  11.305  -1.263   0.365  -4.185  N3     UA3   4  
UA3  C4     C4   C  0  1  Y  N  N  35.079  -4.524  11.999  -0.308  -0.354  -4.807  C4     UA3   5  
UA3  O4     O4   O  0  1  N  N  N  34.381  -5.512  12.054  -0.439  -0.670  -5.976  O4     UA3   6  
UA3  C5     C5   C  0  1  Y  N  N  36.401  -4.353  12.579   0.848  -0.742  -4.088  C5     UA3   7  
UA3  C6     C6   C  0  1  Y  N  N  37.056  -3.188  12.429   0.969  -0.380  -2.793  C6     UA3   8  
UA3  "O5'"  O5*  O  0  1  N  N  N  40.777   0.336  13.964   3.915   0.423   1.092  "O5'"  UA3   9  
UA3  "C5'"  C5*  C  0  1  N  N  N  40.223   0.596  12.517   2.707  -0.225   1.493  "C5'"  UA3  10  
UA3  "C4'"  C4*  C  0  1  N  N  R  38.937   0.320  12.285   1.506   0.610   1.047  "C4'"  UA3  11  
UA3  "O4'"  O4*  O  0  1  N  N  N  38.734  -0.959  11.693   1.493   0.720  -0.386  "O4'"  UA3  12  
UA3  "C3'"  C3*  C  0  1  N  N  S  38.033   1.171  12.879   0.197  -0.084   1.469  "C3'"  UA3  13  
UA3  "O3'"  O3*  O  0  1  N  N  N  37.313   2.450  12.414  -0.561   0.752   2.344  "O3'"  UA3  14  
UA3  "C2'"  C2*  C  0  1  N  N  S  36.882  -0.127  13.065  -0.560  -0.303   0.133  "C2'"  UA3  15  
UA3  "O2'"  O2*  O  0  1  N  N  N  37.063  -0.815  14.546  -0.354  -1.627  -0.361  "O2'"  UA3  16  
UA3  "C1'"  C1*  C  0  1  N  N  R  37.181  -0.862  11.577   0.108   0.744  -0.793  "C1'"  UA3  17  
UA3  O3P    O3P  O  0  1  N  N  N  35.124   3.180  13.313  -1.706   0.780   4.710  O3P    UA3  18  
UA3  P      P    P  0  1  N  N  N  36.674   3.571  13.193  -0.850  -0.106   3.675  P      UA3  19  
UA3  O1P    O1P  O  0  1  N  N  N  36.906   4.864  12.468   0.434  -0.492   4.301  O1P    UA3  20  
UA3  O2P    O2P  O  0  1  N  N  N  37.269   3.614  14.575  -1.678  -1.431   3.289  O2P    UA3  21  
UA3  H3     H3   H  0  1  N  N  N  33.657  -3.498  10.891  -2.058   0.635  -4.671  H3     UA3  22  
UA3  H5     H5   H  0  1  N  N  N  36.867  -5.179  13.142   1.624  -1.319  -4.570  H5     UA3  23  
UA3  H6     H6   H  0  1  N  N  N  38.058  -3.081  12.877   1.844  -0.666  -2.229  H6     UA3  24  
UA3  "H5'"  H5*  H  0  1  N  N  N  41.692   0.532  14.129   4.645  -0.134   1.392  "H5'"  UA3  25  
UA3  H51    1H5  H  0  1  N  N  N  40.429   1.653  12.229   2.654  -1.212   1.033  H51    UA3  26  
UA3  H52    2H5  H  0  1  N  N  N  40.854   0.049  11.778   2.694  -0.329   2.578  H52    UA3  27  
UA3  H4     H4   H  0  1  N  N  N  38.238   0.633  11.474   1.559   1.603   1.494  H4     UA3  28  
UA3  "H3'"  H3*  H  0  1  N  N  N  38.429   1.387  13.899   0.411  -1.040   1.947  "H3'"  UA3  29  
UA3  "H2'"  H2*  H  0  1  N  N  N  35.861   0.319  13.022  -1.623  -0.094   0.252  "H2'"  UA3  30  
UA3  HB     HB   H  0  1  N  N  N  36.895  -0.401  15.384  -0.838  -1.692  -1.196  HB     UA3  31  
UA3  "H1'"  H1*  H  0  1  N  N  N  36.838  -0.257  10.706  -0.322   1.731  -0.630  "H1'"  UA3  32  
UA3  H3P    H3P  H  0  1  N  N  N  34.721   3.887  13.804  -1.857   0.230   5.491  H3P    UA3  33  
UA3  H2P    H2P  H  0  1  N  N  N  36.866   4.321  15.066  -2.506  -1.136   2.886  H2P    UA3  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UA3  N1     C2     SING  Y  N   1  
UA3  N1     C6     SING  Y  N   2  
UA3  N1     "C1'"  SING  N  N   3  
UA3  C2     O2     DOUB  N  N   4  
UA3  C2     N3     SING  Y  N   5  
UA3  N3     C4     SING  Y  N   6  
UA3  N3     H3     SING  N  N   7  
UA3  C4     O4     DOUB  N  N   8  
UA3  C4     C5     SING  Y  N   9  
UA3  C5     C6     DOUB  Y  N  10  
UA3  C5     H5     SING  N  N  11  
UA3  C6     H6     SING  N  N  12  
UA3  "O5'"  "C5'"  SING  N  N  13  
UA3  "O5'"  "H5'"  SING  N  N  14  
UA3  "C5'"  "C4'"  SING  N  N  15  
UA3  "C5'"  H51    SING  N  N  16  
UA3  "C5'"  H52    SING  N  N  17  
UA3  "C4'"  "O4'"  SING  N  N  18  
UA3  "C4'"  "C3'"  SING  N  N  19  
UA3  "C4'"  H4     SING  N  N  20  
UA3  "O4'"  "C1'"  SING  N  N  21  
UA3  "C3'"  "O3'"  SING  N  N  22  
UA3  "C3'"  "C2'"  SING  N  N  23  
UA3  "C3'"  "H3'"  SING  N  N  24  
UA3  "O3'"  P      SING  N  N  25  
UA3  "C2'"  "O2'"  SING  N  N  26  
UA3  "C2'"  "C1'"  SING  N  N  27  
UA3  "C2'"  "H2'"  SING  N  N  28  
UA3  "O2'"  HB     SING  N  N  29  
UA3  "C1'"  "H1'"  SING  N  N  30  
UA3  O3P    P      SING  N  N  31  
UA3  O3P    H3P    SING  N  N  32  
UA3  P      O1P    DOUB  N  N  33  
UA3  P      O2P    SING  N  N  34  
UA3  O2P    H2P    SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UA3  SMILES            ACDLabs               10.04  "O=C1NC(=O)N(C=C1)C2OC(C(OP(=O)(O)O)C2O)CO"  
UA3  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H]1O[C@H]([C@@H](O)[C@@H]1O[P](O)(O)=O)N2C=CC(=O)NC2=O"  
UA3  SMILES            CACTVS                3.341  "OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)N2C=CC(=O)NC2=O"  
UA3  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)NC1=O)[C@H]2[C@H]([C@@H](C(O2)CO)OP(=O)(O)O)O"  
UA3  SMILES            "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)NC1=O)C2C(C(C(O2)CO)OP(=O)(O)O)O"  
UA3  InChI             InChI                 1.03   "InChI=1S/C9H13N2O9P/c12-3-4-7(20-21(16,17)18)6(14)8(19-4)11-2-1-5(13)10-9(11)15/h1-2,4,6-8,12,14H,3H2,(H,10,13,15)(H2,16,17,18)/t4-,6+,7-,8-/m1/s1"  
UA3  InChIKey          InChI                 1.03   FOGRQMPFHUHIGU-PXBUCIJWSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UA3  "SYSTEMATIC NAME"  ACDLabs               10.04  "1-(3-O-phosphono-beta-D-arabinofuranosyl)pyrimidine-2,4(1H,3H)-dione"  
UA3  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(3S,4S,5R)-5-(2,4-dioxopyrimidin-1-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UA3  "Create component"   2004-07-27  RCSB  
UA3  "Modify descriptor"  2011-06-04  RCSB  
UA3  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     UA3
_pdbx_chem_comp_synonyms.name        "1-(3-O-PHOSPHONO-BETA-L-ARABINOFURANOSYL)PYRIMIDINE-2,4(1H,3H)-DIONE"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
