data_U93
# 
_chem_comp.id                                    U93 
_chem_comp.name                                  "(2~{S})-2-[[(~{R})-[[(5~{S})-5-azanyl-6-oxidanylidene-hexyl]amino]-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methyl]amino]-3-phosphonooxy-propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H30 N4 O12 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-30 
_chem_comp.pdbx_modified_date                    2023-03-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        544.387 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     U93 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8A5W 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
U93 N   N1  N 0 1 N N N -4.649 -55.517 -77.813 -7.194 -0.785 -0.810 N   U93 1  
U93 CA  C1  C 0 1 N N S -3.689 -54.419 -77.868 -6.742 -2.117 -0.384 CA  U93 2  
U93 C   C2  C 0 1 N N N -4.153 -53.142 -77.161 -7.889 -2.854 0.258  C   U93 3  
U93 O   O1  O 0 1 N N N -3.363 -52.468 -76.500 -8.970 -2.325 0.352  O   U93 4  
U93 CB  C3  C 0 1 N N N -3.319 -54.095 -79.312 -5.601 -1.970 0.624  CB  U93 5  
U93 CAF C4  C 0 1 N N N -2.956 -55.393 -80.043 -4.391 -1.334 -0.064 CAF U93 6  
U93 CAG C5  C 0 1 N N N -2.470 -54.941 -81.405 -3.250 -1.187 0.944  CAG U93 7  
U93 CAH C6  C 0 1 N N N -2.131 -56.028 -82.415 -2.041 -0.551 0.256  CAH U93 8  
U93 CAP C7  C 0 1 Y N N -1.600 -55.544 -86.425 1.717  1.959  3.605  CAP U93 9  
U93 CAQ C8  C 0 1 N N N -1.511 -54.252 -86.895 2.168  1.637  5.006  CAQ U93 10 
U93 CAR C9  C 0 1 Y N N -0.999 -55.868 -85.224 1.208  0.951  2.799  CAR U93 11 
U93 CAT C10 C 0 1 Y N N -1.052 -57.127 -84.614 0.795  1.263  1.507  CAT U93 12 
U93 CAU C11 C 0 1 N N R -0.402 -57.357 -83.387 0.236  0.199  0.598  CAU U93 13 
U93 CAV C12 C 0 1 Y N N -1.735 -58.115 -85.309 0.909  2.575  1.078  CAV U93 14 
U93 CAW C13 C 0 1 N N N -1.800 -59.422 -84.784 0.474  2.963  -0.312 CAW U93 15 
U93 CAX C14 C 0 1 Y N N -2.338 -57.766 -86.535 1.426  3.525  1.939  CAX U93 16 
U93 CAZ C15 C 0 1 N N S 1.990  -57.535 -82.564 1.305  -1.218 -1.049 CAZ U93 17 
U93 CBA C16 C 0 1 N N N 3.331  -56.780 -82.524 0.266  -2.276 -1.319 CBA U93 18 
U93 CBC C17 C 0 1 N N N 2.172  -59.000 -83.042 2.693  -1.771 -1.380 CBC U93 19 
U93 NAI N2  N 0 1 N N N -1.167 -57.116 -82.121 -0.945 -0.410 1.224  NAI U93 20 
U93 NAO N3  N 0 1 Y N N -2.279 -56.477 -87.099 1.804  3.197  3.159  NAO U93 21 
U93 NAY N4  N 0 1 N N N 0.968  -56.831 -83.377 1.256  -0.834 0.368  NAY U93 22 
U93 OAK O2  O 0 1 N N N -3.853 -61.821 -85.379 1.026  4.446  -3.008 OAK U93 23 
U93 OAL O3  O 0 1 N N N -1.978 -61.788 -83.773 0.837  6.650  -1.793 OAL U93 24 
U93 OAM O4  O 0 1 N N N -4.309 -61.410 -82.967 -1.250 5.086  -2.123 OAM U93 25 
U93 OAN O5  O 0 1 N N N -3.110 -59.803 -84.356 0.693  4.361  -0.507 OAN U93 26 
U93 OAS O6  O 0 1 N N N -0.339 -54.872 -84.568 1.116  -0.322 3.263  OAS U93 27 
U93 OBB O7  O 0 1 N N N 3.536  -55.864 -83.357 -0.443 -2.669 -0.423 OBB U93 28 
U93 OBD O8  O 0 1 N N N 3.327  -59.655 -82.458 2.909  -2.981 -0.651 OBD U93 29 
U93 OBF O9  O 0 1 N N N 4.194  -61.973 -82.195 5.494  -2.973 -0.168 OBF U93 30 
U93 OBG O10 O 0 1 N N N 2.577  -61.373 -83.942 4.115  -5.197 0.091  OBG U93 31 
U93 OBH O11 O 0 1 N N N 4.921  -60.568 -84.143 4.535  -4.167 -2.175 OBH U93 32 
U93 OBI O12 O 0 1 N N N 4.125  -57.145 -81.632 0.128  -2.782 -2.555 OBI U93 33 
U93 PAJ P1  P 0 1 N N N -3.343 -61.343 -84.075 0.342  5.121  -1.882 PAJ U93 34 
U93 PBE P2  P 0 1 N N N 3.822  -60.994 -83.266 4.269  -3.837 -0.757 PBE U93 35 
U93 H1  H1  H 0 1 N N N -4.878 -55.713 -76.859 -7.903 -0.855 -1.524 H1  U93 36 
U93 H2  H2  H 0 1 N N N -5.479 -55.259 -78.308 -7.524 -0.247 -0.024 H2  U93 37 
U93 H4  H4  H 0 1 N N N -2.768 -54.749 -77.365 -6.392 -2.676 -1.252 H4  U93 38 
U93 H5  H5  H 0 1 N N N -5.184 -52.830 -77.243 -7.744 -3.855 0.635  H5  U93 39 
U93 H6  H6  H 0 1 N N N -2.457 -53.411 -79.326 -5.925 -1.336 1.449  H6  U93 40 
U93 H7  H7  H 0 1 N N N -4.174 -53.618 -79.813 -5.326 -2.953 1.006  H7  U93 41 
U93 H8  H8  H 0 1 N N N -3.838 -56.043 -80.141 -4.068 -1.968 -0.890 H8  U93 42 
U93 H9  H9  H 0 1 N N N -2.161 -55.932 -79.506 -4.667 -0.351 -0.447 H9  U93 43 
U93 H10 H10 H 0 1 N N N -1.563 -54.338 -81.250 -3.574 -0.553 1.770  H10 U93 44 
U93 H11 H11 H 0 1 N N N -3.258 -54.312 -81.846 -2.975 -2.170 1.327  H11 U93 45 
U93 H12 H12 H 0 1 N N N -1.744 -55.509 -83.304 -1.717 -1.185 -0.569 H12 U93 46 
U93 H13 H13 H 0 1 N N N -3.082 -56.521 -82.664 -2.316 0.432  -0.126 H13 U93 47 
U93 H14 H14 H 0 1 N N N -2.062 -54.168 -87.843 3.223  1.363  4.994  H14 U93 48 
U93 H15 H15 H 0 1 N N N -1.945 -53.562 -86.156 2.027  2.511  5.642  H15 U93 49 
U93 H16 H16 H 0 1 N N N -0.455 -53.994 -87.060 1.581  0.806  5.395  H16 U93 50 
U93 H17 H17 H 0 1 N N N -0.250 -58.446 -83.375 -0.048 0.647  -0.354 H17 U93 51 
U93 H18 H18 H 0 1 N N N -1.470 -60.126 -85.562 1.053  2.399  -1.044 H18 U93 52 
U93 H19 H19 H 0 1 N N N -1.121 -59.484 -83.921 -0.585 2.740  -0.437 H19 U93 53 
U93 H20 H20 H 0 1 N N N -2.877 -58.532 -87.073 1.517  4.549  1.610  H20 U93 54 
U93 H21 H21 H 0 1 N N N 1.618  -57.582 -81.530 1.104  -0.345 -1.670 H21 U93 55 
U93 H22 H22 H 0 1 N N N 1.272  -59.571 -82.769 2.758  -1.974 -2.449 H22 U93 56 
U93 H23 H23 H 0 1 N N N 2.288  -58.998 -84.136 3.451  -1.039 -1.102 H23 U93 57 
U93 H24 H24 H 0 1 N N N -1.654 -57.945 -81.848 -0.714 -1.299 1.642  H24 U93 58 
U93 H26 H26 H 0 1 N N N 1.292  -56.832 -84.323 2.161  -0.526 0.691  H26 U93 59 
U93 H28 H28 H 0 1 N N N -1.652 -62.320 -84.489 0.657  7.169  -2.589 H28 U93 60 
U93 H29 H29 H 0 1 N N N -5.132 -61.763 -83.285 -1.763 5.511  -1.423 H29 U93 61 
U93 H30 H30 H 0 1 N N N 0.030  -55.213 -83.762 0.309  -0.500 3.765  H30 U93 62 
U93 H31 H31 H 0 1 N N N 5.121  -62.172 -82.255 5.387  -2.721 0.759  H31 U93 63 
U93 H32 H32 H 0 1 N N N 2.685  -61.278 -84.881 4.899  -5.763 0.072  H32 U93 64 
U93 H33 H33 H 0 1 N N N 4.916  -56.621 -81.678 -0.552 -3.458 -2.679 H33 U93 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
U93 NAO CAX DOUB Y N 1  
U93 NAO CAP SING Y N 2  
U93 CAQ CAP SING N N 3  
U93 CAX CAV SING Y N 4  
U93 CAP CAR DOUB Y N 5  
U93 OAK PAJ DOUB N N 6  
U93 CAV CAW SING N N 7  
U93 CAV CAT DOUB Y N 8  
U93 CAR CAT SING Y N 9  
U93 CAR OAS SING N N 10 
U93 CAW OAN SING N N 11 
U93 CAT CAU SING N N 12 
U93 OAN PAJ SING N N 13 
U93 OBH PBE DOUB N N 14 
U93 PAJ OAL SING N N 15 
U93 PAJ OAM SING N N 16 
U93 OBG PBE SING N N 17 
U93 CAU NAY SING N N 18 
U93 CAU NAI SING N N 19 
U93 NAY CAZ SING N N 20 
U93 OBB CBA DOUB N N 21 
U93 PBE OBD SING N N 22 
U93 PBE OBF SING N N 23 
U93 CBC CAZ SING N N 24 
U93 CBC OBD SING N N 25 
U93 CAZ CBA SING N N 26 
U93 CBA OBI SING N N 27 
U93 CAH NAI SING N N 28 
U93 CAH CAG SING N N 29 
U93 CAG CAF SING N N 30 
U93 CAF CB  SING N N 31 
U93 CB  CA  SING N N 32 
U93 CA  N   SING N N 33 
U93 CA  C   SING N N 34 
U93 C   O   DOUB N N 35 
U93 N   H1  SING N N 36 
U93 N   H2  SING N N 37 
U93 CA  H4  SING N N 38 
U93 C   H5  SING N N 39 
U93 CB  H6  SING N N 40 
U93 CB  H7  SING N N 41 
U93 CAF H8  SING N N 42 
U93 CAF H9  SING N N 43 
U93 CAG H10 SING N N 44 
U93 CAG H11 SING N N 45 
U93 CAH H12 SING N N 46 
U93 CAH H13 SING N N 47 
U93 CAQ H14 SING N N 48 
U93 CAQ H15 SING N N 49 
U93 CAQ H16 SING N N 50 
U93 CAU H17 SING N N 51 
U93 CAW H18 SING N N 52 
U93 CAW H19 SING N N 53 
U93 CAX H20 SING N N 54 
U93 CAZ H21 SING N N 55 
U93 CBC H22 SING N N 56 
U93 CBC H23 SING N N 57 
U93 NAI H24 SING N N 58 
U93 NAY H26 SING N N 59 
U93 OAL H28 SING N N 60 
U93 OAM H29 SING N N 61 
U93 OAS H30 SING N N 62 
U93 OBF H31 SING N N 63 
U93 OBG H32 SING N N 64 
U93 OBI H33 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
U93 InChI            InChI                1.06  "InChI=1S/C17H30N4O12P2/c1-10-15(23)14(11(6-20-10)8-32-34(26,27)28)16(19-5-3-2-4-12(18)7-22)21-13(17(24)25)9-33-35(29,30)31/h6-7,12-13,16,19,21,23H,2-5,8-9,18H2,1H3,(H,24,25)(H2,26,27,28)(H2,29,30,31)/t12-,13-,16+/m0/s1" 
U93 InChIKey         InChI                1.06  DIDMOBOUHGSDIF-HEHGZKQESA-N                                                                                                                                                                                                  
U93 SMILES_CANONICAL CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c([C@H](NCCCC[C@H](N)C=O)N[C@@H](CO[P](O)(O)=O)C(O)=O)c1O"                                                                                                                                             
U93 SMILES           CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c([CH](NCCCC[CH](N)C=O)N[CH](CO[P](O)(O)=O)C(O)=O)c1O"                                                                                                                                                 
U93 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)[C@H](NCCCC[C@@H](C=O)N)N[C@@H](COP(=O)(O)O)C(=O)O)O"                                                                                                                                              
U93 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C(NCCCCC(C=O)N)NC(COP(=O)(O)O)C(=O)O)O"                                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           U93 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-[[(~{R})-[[(5~{S})-5-azanyl-6-oxidanylidene-hexyl]amino]-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methyl]amino]-3-phosphonooxy-propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
U93 "Create component" 2023-01-31 PDBE 
U93 "Initial release"  2023-03-29 RCSB 
# 
