data_IY3
# 
_chem_comp.id                                    IY3 
_chem_comp.name                                  "(2~{S})-2-[2-[3-(aminomethyl)phenyl]ethanoylamino]-6-azanyl-~{N}-[(2~{S})-6-azanyl-1-[[(5~{R})-6-azanyl-5-carbamimidamido-6-oxidanylidene-hexyl]amino]-1-oxidanylidene-hexan-2-yl]hexanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H50 N10 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-20 
_chem_comp.pdbx_modified_date                    2022-12-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        590.761 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IY3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZLD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IY3 N1  N1  N 0 1 N N N -15.782 13.423 -17.640 -10.971 1.666  -0.420 N1  IY3 1  
IY3 C7  C1  C 0 1 N N N -17.847 15.849 -20.088 -10.118 -2.666 0.024  C7  IY3 2  
IY3 C8  C2  C 0 1 N N S -12.646 16.093 -13.844 -0.888  1.116  0.245  C8  IY3 3  
IY3 N2  N2  N 0 1 N N N -16.431 15.734 -20.176 -9.477  -1.567 0.546  N2  IY3 4  
IY3 C9  C3  C 0 1 N N N -12.337 15.226 -12.623 -0.962  2.490  -0.423 C9  IY3 5  
IY3 O1  O1  O 0 1 N N N -15.376 13.109 -19.831 -11.556 -0.011 0.910  O1  IY3 6  
IY3 C1  C4  C 0 1 N N N -10.863 15.800 -17.206 -4.495  -0.064 -0.257 C1  IY3 7  
IY3 C5  C5  C 0 1 N N R -15.559 15.375 -19.069 -9.486  -0.298 -0.185 C5  IY3 8  
IY3 C6  C6  C 0 1 N N N -15.565 13.860 -18.871 -10.745 0.462  0.142  C6  IY3 9  
IY3 N3  N3  N 0 1 N N N -18.548 16.132 -21.277 -10.733 -2.578 -1.122 N3  IY3 10 
IY3 C4  C7  C 0 1 N N N -14.138 15.871 -19.325 -8.268  0.534  0.223  C4  IY3 11 
IY3 O4  O2  O 0 1 N N N -13.953 18.503 -14.353 1.528   1.440  1.396  O4  IY3 12 
IY3 C3  C8  C 0 1 N N N -13.190 15.533 -18.184 -6.990  -0.181 -0.221 C3  IY3 13 
IY3 O3  O3  O 0 1 N N N -17.083 16.176 -16.267 5.349   -0.097 -0.705 O3  IY3 14 
IY3 C2  C9  C 0 1 N N N -11.803 16.123 -18.356 -5.773  0.651  0.187  C2  IY3 15 
IY3 N4  N4  N 0 1 N N N -18.373 15.679 -18.899 -10.110 -3.857 0.710  N4  IY3 16 
IY3 N   N5  N 0 1 N N N -11.385 16.252 -15.921 -3.329  0.733  0.133  N   IY3 17 
IY3 C   C10 C 0 1 N N N -12.045 15.445 -15.089 -2.087  0.297  -0.156 C   IY3 18 
IY3 O   O4  O 0 1 N N N -12.195 14.244 -15.296 -1.935  -0.755 -0.741 O   IY3 19 
IY3 C10 C11 C 0 1 N N N -12.946 15.764 -11.335 0.187   3.365  0.082  C10 IY3 20 
IY3 C11 C12 C 0 1 N N N -12.441 17.140 -10.938 0.113   4.740  -0.586 C11 IY3 21 
IY3 C12 C13 C 0 1 N N N -13.276 17.719 -9.809  1.262   5.615  -0.081 C12 IY3 22 
IY3 C13 C14 C 0 1 N N N -14.619 17.495 -14.142 1.497   0.664  0.464  C13 IY3 23 
IY3 C14 C15 C 0 1 N N S -16.140 17.584 -14.034 2.755   -0.040 0.027  C14 IY3 24 
IY3 C15 C16 C 0 1 N N N -16.482 18.334 -12.746 2.562   -1.553 0.148  C15 IY3 25 
IY3 C16 C17 C 0 1 N N N -17.917 18.829 -12.702 3.792   -2.270 -0.413 C16 IY3 26 
IY3 C17 C18 C 0 1 N N N -18.219 19.649 -11.460 3.598   -3.783 -0.292 C17 IY3 27 
IY3 C18 C19 C 0 1 N N N -19.670 20.079 -11.393 4.828   -4.501 -0.852 C18 IY3 28 
IY3 C19 C20 C 0 1 N N N -17.208 15.676 -15.151 5.135   0.312  0.416  C19 IY3 29 
IY3 C20 C21 C 0 1 N N N -17.890 14.337 -14.947 6.282   0.743  1.293  C20 IY3 30 
IY3 C21 C22 C 0 1 Y N N -19.161 14.208 -15.758 7.579   0.569  0.545  C21 IY3 31 
IY3 C22 C23 C 0 1 Y N N -19.269 13.233 -16.743 8.266   -0.628 0.622  C22 IY3 32 
IY3 C23 C24 C 0 1 Y N N -20.426 13.096 -17.507 9.453   -0.790 -0.068 C23 IY3 33 
IY3 C24 C25 C 0 1 N N N -20.523 12.028 -18.568 10.201  -2.095 0.016  C24 IY3 34 
IY3 C27 C26 C 0 1 Y N N -21.484 13.961 -17.268 9.952   0.245  -0.836 C27 IY3 35 
IY3 C28 C27 C 0 1 Y N N -21.393 14.934 -16.289 9.265   1.443  -0.913 C28 IY3 36 
IY3 C29 C28 C 0 1 Y N N -20.237 15.057 -15.538 8.079   1.604  -0.223 C29 IY3 37 
IY3 N5  N6  N 0 1 N N N -12.562 18.682 -8.976  1.191   6.935  -0.723 N5  IY3 38 
IY3 N6  N7  N 0 1 N N N -14.080 16.282 -13.981 0.336   0.432  -0.180 N6  IY3 39 
IY3 N7  N8  N 0 1 N N N -20.002 20.669 -10.093 4.642   -5.953 -0.736 N7  IY3 40 
IY3 N8  N9  N 0 1 N N N -16.761 16.268 -14.038 3.871   0.380  0.879  N8  IY3 41 
IY3 N9  N10 N 0 1 N N N -19.627 10.904 -18.334 11.147  -2.045 1.139  N9  IY3 42 
IY3 H1  H1  H 0 1 N N N -15.798 12.441 -17.454 -11.782 2.155  -0.209 H1  IY3 43 
IY3 H2  H2  H 0 1 N N N -15.930 14.075 -16.897 -10.321 2.046  -1.031 H2  IY3 44 
IY3 H3  H3  H 0 1 N N N -12.165 17.072 -13.700 -0.878  1.238  1.329  H3  IY3 45 
IY3 H4  H4  H 0 1 N N N -16.005 15.913 -21.063 -9.019  -1.633 1.399  H4  IY3 46 
IY3 H5  H5  H 0 1 N N N -12.734 14.216 -12.802 -0.882  2.374  -1.503 H5  IY3 47 
IY3 H6  H6  H 0 1 N N N -11.245 15.174 -12.498 -1.913  2.963  -0.177 H6  IY3 48 
IY3 H7  H7  H 0 1 N N N -10.716 14.711 -17.165 -4.442  -1.043 0.218  H7  IY3 49 
IY3 H8  H8  H 0 1 N N N -9.897  16.294 -17.389 -4.505  -0.186 -1.341 H8  IY3 50 
IY3 H9  H9  H 0 1 N N N -15.929 15.846 -18.147 -9.448  -0.496 -1.257 H9  IY3 51 
IY3 H10 H10 H 0 1 N N N -19.534 16.195 -21.124 -11.185 -3.353 -1.491 H10 IY3 52 
IY3 H11 H11 H 0 1 N N N -13.762 15.404 -20.247 -8.321  1.513  -0.253 H11 IY3 53 
IY3 H12 H12 H 0 1 N N N -14.163 16.963 -19.452 -8.258  0.656  1.306  H12 IY3 54 
IY3 H13 H13 H 0 1 N N N -13.619 15.920 -17.248 -6.937  -1.160 0.255  H13 IY3 55 
IY3 H14 H14 H 0 1 N N N -13.098 14.439 -18.120 -7.000  -0.303 -1.304 H14 IY3 56 
IY3 H15 H15 H 0 1 N N N -11.368 15.725 -19.285 -5.763  0.773  1.270  H15 IY3 57 
IY3 H16 H16 H 0 1 N N N -11.896 17.216 -18.434 -5.826  1.630  -0.289 H16 IY3 58 
IY3 H17 H17 H 0 1 N N N -17.784 15.480 -18.116 -9.653  -3.923 1.563  H17 IY3 59 
IY3 H18 H18 H 0 1 N N N -19.363 15.748 -18.776 -10.562 -4.632 0.342  H18 IY3 60 
IY3 H19 H19 H 0 1 N N N -11.242 17.205 -15.653 -3.451  1.574  0.600  H19 IY3 61 
IY3 H20 H20 H 0 1 N N N -14.037 15.821 -11.466 0.108   3.482  1.163  H20 IY3 62 
IY3 H21 H21 H 0 1 N N N -12.710 15.062 -10.522 1.138   2.893  -0.163 H21 IY3 63 
IY3 H22 H22 H 0 1 N N N -11.395 17.058 -10.607 0.192   4.623  -1.667 H22 IY3 64 
IY3 H23 H23 H 0 1 N N N -12.499 17.810 -11.809 -0.838  5.212  -0.340 H23 IY3 65 
IY3 H24 H24 H 0 1 N N N -14.150 18.222 -10.248 1.183   5.731  0.999  H24 IY3 66 
IY3 H25 H25 H 0 1 N N N -13.613 16.891 -9.168  2.213   5.142  -0.327 H25 IY3 67 
IY3 H26 H26 H 0 1 N N N -16.516 18.168 -14.887 2.974   0.217  -1.010 H26 IY3 68 
IY3 H27 H27 H 0 1 N N N -16.320 17.657 -11.894 2.432   -1.819 1.197  H27 IY3 69 
IY3 H28 H28 H 0 1 N N N -15.811 19.201 -12.658 1.678   -1.852 -0.416 H28 IY3 70 
IY3 H29 H29 H 0 1 N N N -18.101 19.454 -13.589 3.921   -2.003 -1.461 H29 IY3 71 
IY3 H30 H30 H 0 1 N N N -18.590 17.959 -12.721 4.675   -1.971 0.151  H30 IY3 72 
IY3 H31 H31 H 0 1 N N N -17.988 19.043 -10.571 3.468   -4.050 0.757  H31 IY3 73 
IY3 H32 H32 H 0 1 N N N -17.584 20.547 -11.466 2.714   -4.083 -0.855 H32 IY3 74 
IY3 H33 H33 H 0 1 N N N -19.858 20.824 -12.181 4.958   -4.234 -1.901 H33 IY3 75 
IY3 H34 H34 H 0 1 N N N -20.310 19.200 -11.559 5.712   -4.201 -0.289 H34 IY3 76 
IY3 H35 H35 H 0 1 N N N -18.138 14.226 -13.881 6.158   1.791  1.565  H35 IY3 77 
IY3 H36 H36 H 0 1 N N N -17.196 13.538 -15.248 6.299   0.133  2.196  H36 IY3 78 
IY3 H37 H37 H 0 1 N N N -18.438 12.567 -16.920 7.875   -1.437 1.222  H37 IY3 79 
IY3 H38 H38 H 0 1 N N N -20.273 12.478 -19.540 9.495   -2.910 0.171  H38 IY3 80 
IY3 H39 H39 H 0 1 N N N -21.556 11.652 -18.592 10.748  -2.260 -0.913 H39 IY3 81 
IY3 H40 H40 H 0 1 N N N -22.388 13.874 -17.852 10.879  0.119  -1.375 H40 IY3 82 
IY3 H41 H41 H 0 1 N N N -22.225 15.599 -16.110 9.656   2.252  -1.513 H41 IY3 83 
IY3 H42 H42 H 0 1 N N N -20.172 15.819 -14.775 7.540   2.538  -0.286 H42 IY3 84 
IY3 H43 H43 H 0 1 N N N -13.171 19.019 -8.258  1.940   7.531  -0.406 H43 IY3 85 
IY3 H44 H44 H 0 1 N N N -11.769 18.238 -8.559  1.198   6.849  -1.728 H44 IY3 86 
IY3 H46 H46 H 0 1 N N N -14.680 15.483 -13.954 0.311   -0.189 -0.925 H46 IY3 87 
IY3 H47 H47 H 0 1 N N N -20.965 20.940 -10.085 3.794   -6.247 -1.196 H47 IY3 88 
IY3 H48 H48 H 0 1 N N N -19.840 19.997 -9.371  5.442   -6.450 -1.099 H48 IY3 89 
IY3 H50 H50 H 0 1 N N N -16.858 15.784 -13.168 3.700   0.707  1.776  H50 IY3 90 
IY3 H51 H51 H 0 1 N N N -19.736 10.232 -19.067 10.672  -1.829 2.002  H51 IY3 91 
IY3 H52 H52 H 0 1 N N N -18.682 11.229 -18.318 11.662  -2.910 1.216  H52 IY3 92 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IY3 N3  C7  DOUB N N 1  
IY3 N2  C7  SING N N 2  
IY3 N2  C5  SING N N 3  
IY3 C7  N4  SING N N 4  
IY3 O1  C6  DOUB N N 5  
IY3 C4  C5  SING N N 6  
IY3 C4  C3  SING N N 7  
IY3 C5  C6  SING N N 8  
IY3 C6  N1  SING N N 9  
IY3 C24 N9  SING N N 10 
IY3 C24 C23 SING N N 11 
IY3 C2  C3  SING N N 12 
IY3 C2  C1  SING N N 13 
IY3 C23 C27 DOUB Y N 14 
IY3 C23 C22 SING Y N 15 
IY3 C27 C28 SING Y N 16 
IY3 C1  N   SING N N 17 
IY3 C22 C21 DOUB Y N 18 
IY3 C28 C29 DOUB Y N 19 
IY3 O3  C19 DOUB N N 20 
IY3 N   C   SING N N 21 
IY3 C21 C29 SING Y N 22 
IY3 C21 C20 SING N N 23 
IY3 O   C   DOUB N N 24 
IY3 C19 C20 SING N N 25 
IY3 C19 N8  SING N N 26 
IY3 C   C8  SING N N 27 
IY3 O4  C13 DOUB N N 28 
IY3 C13 C14 SING N N 29 
IY3 C13 N6  SING N N 30 
IY3 N8  C14 SING N N 31 
IY3 C14 C15 SING N N 32 
IY3 N6  C8  SING N N 33 
IY3 C8  C9  SING N N 34 
IY3 C15 C16 SING N N 35 
IY3 C16 C17 SING N N 36 
IY3 C9  C10 SING N N 37 
IY3 C17 C18 SING N N 38 
IY3 C18 N7  SING N N 39 
IY3 C10 C11 SING N N 40 
IY3 C11 C12 SING N N 41 
IY3 C12 N5  SING N N 42 
IY3 N1  H1  SING N N 43 
IY3 N1  H2  SING N N 44 
IY3 C8  H3  SING N N 45 
IY3 N2  H4  SING N N 46 
IY3 C9  H5  SING N N 47 
IY3 C9  H6  SING N N 48 
IY3 C1  H7  SING N N 49 
IY3 C1  H8  SING N N 50 
IY3 C5  H9  SING N N 51 
IY3 N3  H10 SING N N 52 
IY3 C4  H11 SING N N 53 
IY3 C4  H12 SING N N 54 
IY3 C3  H13 SING N N 55 
IY3 C3  H14 SING N N 56 
IY3 C2  H15 SING N N 57 
IY3 C2  H16 SING N N 58 
IY3 N4  H17 SING N N 59 
IY3 N4  H18 SING N N 60 
IY3 N   H19 SING N N 61 
IY3 C10 H20 SING N N 62 
IY3 C10 H21 SING N N 63 
IY3 C11 H22 SING N N 64 
IY3 C11 H23 SING N N 65 
IY3 C12 H24 SING N N 66 
IY3 C12 H25 SING N N 67 
IY3 C14 H26 SING N N 68 
IY3 C15 H27 SING N N 69 
IY3 C15 H28 SING N N 70 
IY3 C16 H29 SING N N 71 
IY3 C16 H30 SING N N 72 
IY3 C17 H31 SING N N 73 
IY3 C17 H32 SING N N 74 
IY3 C18 H33 SING N N 75 
IY3 C18 H34 SING N N 76 
IY3 C20 H35 SING N N 77 
IY3 C20 H36 SING N N 78 
IY3 C22 H37 SING N N 79 
IY3 C24 H38 SING N N 80 
IY3 C24 H39 SING N N 81 
IY3 C27 H40 SING N N 82 
IY3 C28 H41 SING N N 83 
IY3 C29 H42 SING N N 84 
IY3 N5  H43 SING N N 85 
IY3 N5  H44 SING N N 86 
IY3 N6  H46 SING N N 87 
IY3 N7  H47 SING N N 88 
IY3 N7  H48 SING N N 89 
IY3 N8  H50 SING N N 90 
IY3 N9  H51 SING N N 91 
IY3 N9  H52 SING N N 92 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IY3 InChI            InChI                1.06  "InChI=1S/C28H50N10O4/c29-13-4-1-11-22(26(41)35-15-6-3-10-21(25(32)40)38-28(33)34)37-27(42)23(12-2-5-14-30)36-24(39)17-19-8-7-9-20(16-19)18-31/h7-9,16,21-23H,1-6,10-15,17-18,29-31H2,(H2,32,40)(H,35,41)(H,36,39)(H,37,42)(H4,33,34,38)/t21-,22+,23+/m1/s1" 
IY3 InChIKey         InChI                1.06  ZUXRIDXDRJUBMD-VJBWXMMDSA-N                                                                                                                                                                                                                                  
IY3 SMILES_CANONICAL CACTVS               3.385 "NCCCC[C@H](NC(=O)Cc1cccc(CN)c1)C(=O)N[C@@H](CCCCN)C(=O)NCCCC[C@@H](NC(N)=N)C(N)=O"                                                                                                                                                                          
IY3 SMILES           CACTVS               3.385 "NCCCC[CH](NC(=O)Cc1cccc(CN)c1)C(=O)N[CH](CCCCN)C(=O)NCCCC[CH](NC(N)=N)C(N)=O"                                                                                                                                                                               
IY3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/N[C@H](CCCCNC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)Cc1cccc(c1)CN)C(=O)N"                                                                                                                                                                      
IY3 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)CN)CC(=O)NC(CCCCN)C(=O)NC(CCCCN)C(=O)NCCCCC(C(=O)N)NC(=N)N"                                                                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           IY3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-[2-[3-(aminomethyl)phenyl]ethanoylamino]-6-azanyl-~{N}-[(2~{S})-6-azanyl-1-[[(5~{R})-6-azanyl-5-carbamimidamido-6-oxidanylidene-hexyl]amino]-1-oxidanylidene-hexan-2-yl]hexanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IY3 "Create component"  2022-04-20 PDBE 
IY3 "Modify descriptor" 2022-08-22 RCSB 
IY3 "Initial release"   2022-12-28 RCSB 
# 
