data_HY3
# 
_chem_comp.id                                    HY3 
_chem_comp.name                                  3-HYDROXYPROLINE 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C5 H9 N O3" 
_chem_comp.mon_nstd_parent_comp_id               PRO 
_chem_comp.pdbx_synonyms                         "(2S,3S)-3-hydroxypyrrolidine-2-carboxylic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-03-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        131.130 
_chem_comp.one_letter_code                       P 
_chem_comp.three_letter_code                     HY3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2G66 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HY3 C   C1  C 0 1 N N N Y N Y 4.402 24.209 82.570 -1.533 -0.174 0.000  C1  HY3 1  
HY3 O   O1  O 0 1 N N N Y N Y 3.749 23.161 82.517 -1.911 -1.076 -0.710 O1  HY3 2  
HY3 N   N1  N 0 1 N N N Y Y N 4.674 23.733 84.915 0.520  -1.479 0.345  N1  HY3 3  
HY3 CA  C2  C 0 1 N N S Y N N 5.156 24.538 83.783 -0.104 -0.137 0.477  C2  HY3 4  
HY3 C3  C3  C 0 1 N N S N N N 6.639 24.145 83.709 0.743  0.778  -0.433 C3  HY3 5  
HY3 C4  C4  C 0 1 N N N N N N 6.651 22.719 84.175 2.114  0.078  -0.539 C4  HY3 6  
HY3 C5  C5  C 0 1 N N N N N N 5.702 22.773 85.371 1.979  -1.201 0.315  C5  HY3 7  
HY3 O2  O2  O 0 1 N N N N N N 7.372 24.987 84.631 0.890  2.069  0.161  O2  HY3 8  
HY3 OXT OXT O 0 1 N Y N Y N Y 4.422 25.098 81.450 -2.386 0.799  0.359  OXT HY3 9  
HY3 H   H   H 0 1 N Y N Y Y N 4.445 24.345 85.672 0.280  -2.068 1.128  H   HY3 10 
HY3 HA  HN  H 0 1 N N N Y N N 5.026 25.625 83.895 -0.058 0.204  1.511  HN  HY3 11 
HY3 HB  HB  H 0 1 N N N N N N 7.091 24.258 82.712 0.284  0.863  -1.418 HB  HY3 12 
HY3 HG  HG  H 0 1 N N N N N N 6.298 22.026 83.397 2.328  -0.180 -1.576 HG  HY3 13 
HY3 HGA HGA H 0 1 N N N N N N 7.655 22.343 84.423 2.899  0.720  -0.138 HGA HY3 14 
HY3 HD  HD  H 0 1 N N N N N N 6.210 23.118 86.283 2.353  -1.025 1.324  HD  HY3 15 
HY3 HDA HDA H 0 1 N N N N N N 5.291 21.791 85.648 2.514  -2.028 -0.151 HDA HY3 16 
HY3 HO1 HO1 H 0 1 N N N N N N 7.533 24.510 85.437 1.414  2.688  -0.366 HO1 HY3 17 
HY3 HXT HXT H 0 1 N Y N Y N Y 3.887 24.740 80.751 -3.291 0.735  0.026  HXT HY3 18 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HY3 C   O   DOUB N N 1  
HY3 C   CA  SING N N 2  
HY3 C   OXT SING N N 3  
HY3 N   CA  SING N N 4  
HY3 N   C5  SING N N 5  
HY3 N   H   SING N N 6  
HY3 CA  C3  SING N N 7  
HY3 CA  HA  SING N N 8  
HY3 C3  C4  SING N N 9  
HY3 C3  O2  SING N N 10 
HY3 C3  HB  SING N N 11 
HY3 C4  C5  SING N N 12 
HY3 C4  HG  SING N N 13 
HY3 C4  HGA SING N N 14 
HY3 C5  HD  SING N N 15 
HY3 C5  HDA SING N N 16 
HY3 O2  HO1 SING N N 17 
HY3 OXT HXT SING N N 18 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HY3 SMILES           ACDLabs              10.04 "O=C(O)C1NCCC1O"                                                             
HY3 SMILES_CANONICAL CACTVS               3.341 "O[C@H]1CCN[C@@H]1C(O)=O"                                                    
HY3 SMILES           CACTVS               3.341 "O[CH]1CCN[CH]1C(O)=O"                                                       
HY3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1CN[C@@H]([C@H]1O)C(=O)O"                                                  
HY3 SMILES           "OpenEye OEToolkits" 1.5.0 "C1CNC(C1O)C(=O)O"                                                           
HY3 InChI            InChI                1.03  "InChI=1S/C5H9NO3/c7-3-1-2-6-4(3)5(8)9/h3-4,6-7H,1-2H2,(H,8,9)/t3-,4-/m0/s1" 
HY3 InChIKey         InChI                1.03  BJBUEDPLEOHJGE-IMJSIDKUSA-N                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
HY3 "SYSTEMATIC NAME" ACDLabs              10.04 "(3S)-3-hydroxy-L-proline"                       
HY3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3S)-3-hydroxypyrrolidine-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HY3 "Create component"  2006-03-22 RCSB 
HY3 "Modify descriptor" 2011-06-04 RCSB 
HY3 "Modify synonyms"   2021-03-13 RCSB 
HY3 "Modify backbone"   2023-11-03 PDBE 
HY3 "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      HY3 
_pdbx_chem_comp_synonyms.name         "(2S,3S)-3-hydroxypyrrolidine-2-carboxylic acid" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            HY3 
_pdbx_chem_comp_pcm.modified_residue_id                PRO 
_pdbx_chem_comp_pcm.type                               Hydroxylation 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     PTM-0030 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      PTM-0149 
# 
