data_HE3
#

_chem_comp.id                                   HE3
_chem_comp.name                                 "2-HYDROXYETHYL DIHYDROTHIACHROME DIPHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H22 N4 O8 P2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-{(9AS)-9A-[(1S)-1-HYDROXYETHYL]-2,7-DIMETHYL-9A,10-DIHYDRO-5H-PYRIMIDO[4,5-D][1,3]THIAZOLO[3,2-A]PYRIMIDIN-8-YL}ETHYL TRIHYDROGEN DIPHOSPHATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-04-10
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       468.359
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    HE3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1OZG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HE3  C9      C9      C  0  1  N  N  N  124.263   5.856  16.939  -4.530   2.410  -2.173  C9      HE3   1  
HE3  C8      C8      C  0  1  N  N  S  124.146   5.543  18.428  -4.260   2.177  -0.685  C8      HE3   2  
HE3  O9      O9      O  0  1  N  N  N  123.683   4.122  18.123  -3.860   3.406  -0.075  O9      HE3   3  
HE3  C2      C2      C  0  1  N  N  S  123.354   6.566  19.321  -3.145   1.141  -0.525  C2      HE3   4  
HE3  "N4'"   "N4'"   N  0  1  N  N  N  123.513   5.821  20.741  -3.469  -0.153  -1.141  "N4'"   HE3   5  
HE3  "C4'"   "C4'"   C  0  1  Y  N  N  122.135   5.534  21.370  -4.264  -1.044  -0.433  "C4'"   HE3   6  
HE3  "N3'"   "N3'"   N  0  1  Y  N  N  122.226   5.415  22.804  -4.857  -2.042  -1.087  "N3'"   HE3   7  
HE3  "C2'"   "C2'"   C  0  1  Y  N  N  121.066   5.155  23.568  -5.616  -2.908  -0.447  "C2'"   HE3   8  
HE3  CM2     CM2     C  0  1  N  N  N  121.254   5.053  24.977  -6.270  -4.022  -1.222  CM2     HE3   9  
HE3  "N1'"   "N1'"   N  0  1  Y  N  N  119.802   5.022  22.833  -5.819  -2.827   0.853  "N1'"   HE3  10  
HE3  "C6'"   "C6'"   C  0  1  Y  N  N  119.685   5.142  21.343  -5.264  -1.861   1.571  "C6'"   HE3  11  
HE3  "C5'"   "C5'"   C  0  1  Y  N  N  120.888   5.410  20.538  -4.463  -0.929   0.939  "C5'"   HE3  12  
HE3  "C7'"   "C7'"   C  0  1  N  N  N  120.921   5.557  19.016  -3.838   0.181   1.747  "C7'"   HE3  13  
HE3  N3      N3      N  0  1  N  N  N  121.921   6.659  18.642  -2.817   0.835   0.899  N3      HE3  14  
HE3  C4      C4      C  0  1  N  N  N  121.645   8.140  18.986  -1.538   1.175   1.280  C4      HE3  15  
HE3  CM4     CM4     C  0  1  N  N  N  120.191   8.648  18.911  -1.148   1.005   2.726  CM4     HE3  16  
HE3  C5      C5      C  0  1  N  N  N  122.855   8.919  19.353  -0.637   1.645   0.435  C5      HE3  17  
HE3  C6      C6      C  0  1  N  N  N  122.763  10.304  19.686   0.791   2.035   0.719  C6      HE3  18  
HE3  C7      C7      C  0  1  N  N  N  122.918  11.327  18.641   1.714   0.857   0.401  C7      HE3  19  
HE3  O7      O7      O  0  1  N  N  N  122.816  12.707  18.955   3.068   1.226   0.671  O7      HE3  20  
HE3  PA      PA      P  0  1  N  N  S  123.624  13.753  19.567   3.978  -0.053   0.316  PA      HE3  21  
HE3  O2A     O2A     O  0  1  N  N  N  122.798  14.921  19.524   3.623  -1.260   1.321  O2A     HE3  22  
HE3  O3A     O3A     O  0  1  N  N  N  124.023  13.132  20.858   3.713  -0.477  -1.077  O3A     HE3  23  
HE3  O1A     O1A     O  0  1  N  N  N  124.857  13.815  18.545   5.533   0.335   0.473  O1A     HE3  24  
HE3  PB      PB      P  0  1  N  N  N  125.005  14.362  17.092   6.371  -0.747  -0.376  PB      HE3  25  
HE3  O1B     O1B     O  0  1  N  N  N  126.059  15.323  17.249   6.329  -0.355  -1.936  O1B     HE3  26  
HE3  O2B     O2B     O  0  1  N  N  N  125.345  13.169  16.242   7.898  -0.762   0.133  O2B     HE3  27  
HE3  O3B     O3B     O  0  1  N  N  N  123.652  14.893  16.756   5.775  -2.089  -0.188  O3B     HE3  28  
HE3  S1      S1      S  0  1  N  N  N  124.340   8.035  19.337  -1.520   1.724  -1.146  S1      HE3  29  
HE3  H91     1H9     H  0  1  N  N  N  123.383   5.696  16.273  -3.623   2.776  -2.654  H91     HE3  30  
HE3  H92     2H9     H  0  1  N  N  N  124.601   6.895  17.162  -4.835   1.473  -2.638  H92     HE3  31  
HE3  H93     3H9     H  0  1  N  N  N  124.889   5.202  16.288  -5.324   3.148  -2.287  H93     HE3  32  
HE3  H8      H8      H  0  1  N  N  N  125.001   5.632  19.139  -5.168   1.811  -0.204  H8      HE3  33  
HE3  HO9     HO9     H  0  1  N  N  N  123.610   3.927  19.050  -3.056   3.694  -0.529  HO9     HE3  34  
HE3  "H4'"   "H4'"   H  0  1  N  N  N  124.115   6.345  21.376  -3.134  -0.380  -2.023  "H4'"   HE3  35  
HE3  HM21    1HM2    H  0  0  N  N  N  121.760   5.971  25.358  -5.607  -4.887  -1.244  HM21    HE3  36  
HE3  HM22    2HM2    H  0  0  N  N  N  120.339   4.848  25.580  -7.209  -4.296  -0.742  HM22    HE3  37  
HE3  HM23    3HM2    H  0  0  N  N  N  122.033   4.287  25.200  -6.466  -3.689  -2.242  HM23    HE3  38  
HE3  "H6'"   "H6'"   H  0  1  N  N  N  118.711   5.033  20.837  -5.435  -1.803   2.635  "H6'"   HE3  39  
HE3  "H7'1"  "1H7'"  H  0  0  N  N  N  119.909   5.738  18.585  -4.601   0.905   2.033  "H7'1"  HE3  40  
HE3  "H7'2"  "2H7'"  H  0  0  N  N  N  121.140   4.593  18.501  -3.367  -0.232   2.639  "H7'2"  HE3  41  
HE3  HM41    1HM4    H  0  0  N  N  N  119.546   8.000  19.549  -0.740   0.005   2.877  HM41    HE3  42  
HE3  HM42    2HM4    H  0  0  N  N  N  119.992   9.717  19.159  -0.395   1.748   2.989  HM42    HE3  43  
HE3  HM43    3HM4    H  0  0  N  N  N  119.780   8.427  17.898  -2.026   1.138   3.357  HM43    HE3  44  
HE3  H61     1H6     H  0  1  N  N  N  123.494  10.519  20.500   1.065   2.889   0.099  H61     HE3  45  
HE3  H62     2H6     H  0  1  N  N  N  121.792  10.477  20.206   0.892   2.302   1.771  H62     HE3  46  
HE3  H71     1H7     H  0  1  N  N  N  122.193  11.102  17.824   1.440   0.003   1.021  H71     HE3  47  
HE3  H72     2H7     H  0  1  N  N  N  123.895  11.158  18.131   1.613   0.589  -0.650  H72     HE3  48  
HE3  H2A     H2A     H  0  1  N  N  N  123.325  15.603  19.923   3.810  -0.943   2.216  H2A     HE3  49  
HE3  H1B     H1B     H  0  1  N  N  N  126.149  15.656  16.364   6.725   0.524  -2.014  H1B     HE3  50  
HE3  H2B     H2B     H  0  1  N  N  N  125.435  13.502  15.357   8.363  -1.422  -0.399  H2B     HE3  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HE3  C9     C8      SING  N  N   1  
HE3  C9     H91     SING  N  N   2  
HE3  C9     H92     SING  N  N   3  
HE3  C9     H93     SING  N  N   4  
HE3  C8     O9      SING  N  N   5  
HE3  C8     C2      SING  N  N   6  
HE3  C8     H8      SING  N  N   7  
HE3  O9     HO9     SING  N  N   8  
HE3  C2     "N4'"   SING  N  N   9  
HE3  C2     N3      SING  N  N  10  
HE3  C2     S1      SING  N  N  11  
HE3  "N4'"  "C4'"   SING  N  N  12  
HE3  "N4'"  "H4'"   SING  N  N  13  
HE3  "C4'"  "N3'"   DOUB  Y  N  14  
HE3  "C4'"  "C5'"   SING  Y  N  15  
HE3  "N3'"  "C2'"   SING  Y  N  16  
HE3  "C2'"  CM2     SING  N  N  17  
HE3  "C2'"  "N1'"   DOUB  Y  N  18  
HE3  CM2    HM21    SING  N  N  19  
HE3  CM2    HM22    SING  N  N  20  
HE3  CM2    HM23    SING  N  N  21  
HE3  "N1'"  "C6'"   SING  Y  N  22  
HE3  "C6'"  "C5'"   DOUB  Y  N  23  
HE3  "C6'"  "H6'"   SING  N  N  24  
HE3  "C5'"  "C7'"   SING  N  N  25  
HE3  "C7'"  N3      SING  N  N  26  
HE3  "C7'"  "H7'1"  SING  N  N  27  
HE3  "C7'"  "H7'2"  SING  N  N  28  
HE3  N3     C4      SING  N  N  29  
HE3  C4     CM4     SING  N  N  30  
HE3  C4     C5      DOUB  N  N  31  
HE3  CM4    HM41    SING  N  N  32  
HE3  CM4    HM42    SING  N  N  33  
HE3  CM4    HM43    SING  N  N  34  
HE3  C5     C6      SING  N  N  35  
HE3  C5     S1      SING  N  N  36  
HE3  C6     C7      SING  N  N  37  
HE3  C6     H61     SING  N  N  38  
HE3  C6     H62     SING  N  N  39  
HE3  C7     O7      SING  N  N  40  
HE3  C7     H71     SING  N  N  41  
HE3  C7     H72     SING  N  N  42  
HE3  O7     PA      SING  N  N  43  
HE3  PA     O2A     SING  N  N  44  
HE3  PA     O3A     DOUB  N  N  45  
HE3  PA     O1A     SING  N  N  46  
HE3  O2A    H2A     SING  N  N  47  
HE3  O1A    PB      SING  N  N  48  
HE3  PB     O1B     SING  N  N  49  
HE3  PB     O2B     SING  N  N  50  
HE3  PB     O3B     DOUB  N  N  51  
HE3  O1B    H1B     SING  N  N  52  
HE3  O2B    H2B     SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HE3  SMILES            ACDLabs               10.04  "O=P(O)(O)OP(=O)(O)OCCC=2SC3(Nc1nc(ncc1CN3C=2C)C)C(O)C"  
HE3  SMILES_CANONICAL  CACTVS                3.341  "C[C@H](O)[C@]12Nc3nc(C)ncc3CN1C(=C(CCO[P@@](O)(=O)O[P](O)(O)=O)S2)C"  
HE3  SMILES            CACTVS                3.341  "C[CH](O)[C]12Nc3nc(C)ncc3CN1C(=C(CCO[P](O)(=O)O[P](O)(O)=O)S2)C"  
HE3  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1ncc2c(n1)N[C@]3([N@@](C2)C(=C(S3)CCO[P@](=O)(O)OP(=O)(O)O)C)[C@H](C)O"  
HE3  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1ncc2c(n1)NC3(N(C2)C(=C(S3)CCOP(=O)(O)OP(=O)(O)O)C)C(C)O"  
HE3  InChI             InChI                 1.03   "InChI=1S/C14H22N4O8P2S/c1-8-12(4-5-25-28(23,24)26-27(20,21)22)29-14(9(2)19)17-13-11(7-18(8)14)6-15-10(3)16-13/h6,9,19H,4-5,7H2,1-3H3,(H,23,24)(H,15,16,17)(H2,20,21,22)/t9-,14-/m0/s1"  
HE3  InChIKey          InChI                 1.03   UQFVHIGKDHNMJT-XPTSAGLGSA-N  
#
_pdbx_chem_comp_identifier.comp_id          HE3
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  10.04
_pdbx_chem_comp_identifier.identifier       "2-{(9aS)-9a-[(1S)-1-hydroxyethyl]-2,7-dimethyl-9a,10-dihydro-5H-pyrimido[4,5-d][1,3]thiazolo[3,2-a]pyrimidin-8-yl}ethyl trihydrogen diphosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HE3  "Create component"   2003-04-10  RCSB  
HE3  "Modify descriptor"  2011-06-04  RCSB  
HE3  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     HE3
_pdbx_chem_comp_synonyms.name        "2-{(9AS)-9A-[(1S)-1-HYDROXYETHYL]-2,7-DIMETHYL-9A,10-DIHYDRO-5H-PYRIMIDO[4,5-D][1,3]THIAZOLO[3,2-A]PYRIMIDIN-8-YL}ETHYL TRIHYDROGEN DIPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
