data_A1AV3
# 
_chem_comp.id                                    A1AV3 
_chem_comp.name                                  "N-[(2S)-1-{[(2S)-1-hydroxy-3-(2-oxo-1,2-dihydropyridin-3-yl)propan-2-yl]amino}-4-methyl-1-oxopentan-2-yl]-1H-indole-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H28 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-06-27 
_chem_comp.pdbx_modified_date                    2025-01-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        424.493 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AV3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9CEC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AV3 C10  C1  C 0 1 Y N N N N N 114.693 -10.737 69.022 4.584  0.161  -1.285 C10  A1AV3 1  
A1AV3 C13  C2  C 0 1 Y N N N N N 115.011 -7.100  70.235 7.885  1.255  0.170  C13  A1AV3 2  
A1AV3 C15  C3  C 0 1 Y N N N N N 113.884 -7.357  68.109 6.172  0.961  1.830  C15  A1AV3 3  
A1AV3 C21  C4  C 0 1 N N S N N N 111.460 -15.990 64.826 -3.395 -0.244 1.377  C21  A1AV3 4  
A1AV3 C22  C5  C 0 1 N N N N N N 110.982 -15.179 63.680 -4.632 0.247  0.623  C22  A1AV3 5  
A1AV3 C24  C6  C 0 1 N N N N N N 109.777 -13.684 65.434 -3.935 1.254  -1.547 C24  A1AV3 6  
A1AV3 C26  C7  C 0 1 N N N N N N 108.546 -11.789 64.607 -3.596 3.605  -1.769 C26  A1AV3 7  
A1AV3 C28  C8  C 0 1 N N N N N N 109.658 -13.159 63.118 -4.248 2.725  0.311  C28  A1AV3 8  
A1AV3 C01  C9  C 0 1 N N N N N N 117.258 -15.081 67.154 -1.612 -2.809 -2.268 C01  A1AV3 9  
A1AV3 C02  C10 C 0 1 N N N N N N 116.384 -16.142 67.792 -1.352 -3.251 -0.827 C02  A1AV3 10 
A1AV3 C03  C11 C 0 1 N N N N N N 117.172 -16.628 69.032 -1.328 -4.779 -0.758 C03  A1AV3 11 
A1AV3 C04  C12 C 0 1 N N N N N N 114.943 -15.710 68.057 -0.003 -2.699 -0.360 C04  A1AV3 12 
A1AV3 C05  C13 C 0 1 N N S N N N 114.380 -14.671 67.073 -0.076 -1.172 -0.285 C05  A1AV3 13 
A1AV3 C07  C14 C 0 1 N N N N N N 113.871 -12.258 67.066 2.191  -0.470 -0.838 C07  A1AV3 14 
A1AV3 C09  C15 C 0 1 Y N N N N N 114.038 -10.922 67.795 3.541  -0.043 -0.439 C09  A1AV3 15 
A1AV3 C11  C16 C 0 1 Y N N N N N 114.697 -9.328  69.267 5.697  0.562  -0.508 C11  A1AV3 16 
A1AV3 C12  C17 C 0 1 Y N N N N N 115.184 -8.491  70.312 7.020  0.899  -0.823 C12  A1AV3 17 
A1AV3 C14  C18 C 0 1 Y N N N N N 114.357 -6.535  69.127 7.467  1.287  1.494  C14  A1AV3 18 
A1AV3 C16  C19 C 0 1 Y N N N N N 114.058 -8.766  68.188 5.271  0.595  0.834  C16  A1AV3 19 
A1AV3 C18  C20 C 0 1 N N N N N N 112.998 -15.119 66.699 -1.101 -0.768 0.743  C18  A1AV3 20 
A1AV3 C23  C21 C 0 1 N N N N N N 110.114 -13.992 64.125 -4.261 1.430  -0.234 C23  A1AV3 21 
A1AV3 C25  C22 C 0 1 N N N N N N 108.970 -12.568 65.673 -3.594 2.370  -2.323 C25  A1AV3 22 
A1AV3 C30  C23 C 0 1 N N N N N N 111.797 -17.486 64.419 -3.795 -1.364 2.340  C30  A1AV3 23 
A1AV3 N06  N1  N 0 1 N N N N N N 114.432 -13.418 67.705 1.235  -0.639 0.096  N06  A1AV3 24 
A1AV3 N17  N2  N 0 1 Y N N N N N 113.679 -9.743  67.314 3.949  0.215  0.855  N17  A1AV3 25 
A1AV3 N20  N3  N 0 1 N N N N N N 112.767 -15.453 65.297 -2.409 -0.753 0.420  N20  A1AV3 26 
A1AV3 N27  N4  N 0 1 N N N N N N 108.901 -12.104 63.359 -3.926 3.779  -0.464 N27  A1AV3 27 
A1AV3 O08  O1  O 0 1 N N N N N N 113.412 -12.342 65.960 1.938  -0.671 -2.011 O08  A1AV3 28 
A1AV3 O19  O2  O 0 1 N N N N N N 112.160 -15.212 67.513 -0.749 -0.456 1.860  O19  A1AV3 29 
A1AV3 O29  O3  O 0 1 N N N N N N 109.965 -13.421 62.017 -4.542 2.897  1.483  O29  A1AV3 30 
A1AV3 O31  O4  O 0 1 N N N N N N 110.644 -18.298 64.410 -4.469 -2.396 1.617  O31  A1AV3 31 
A1AV3 H101 H1  H 0 0 N N N N N N 115.111 -11.506 69.655 4.569  0.034  -2.358 H101 A1AV3 32 
A1AV3 H131 H2  H 0 0 N N N N N N 115.380 -6.465  71.027 8.904  1.515  -0.076 H131 A1AV3 33 
A1AV3 H151 H3  H 0 0 N N N N N N 113.383 -6.923  67.256 5.857  0.989  2.862  H151 A1AV3 34 
A1AV3 H211 H4  H 0 0 N N N N N N 110.722 -15.990 65.641 -2.961 0.582  1.941  H211 A1AV3 35 
A1AV3 H222 H5  H 0 0 N N N N N N 110.387 -15.823 63.016 -5.014 -0.554 -0.009 H222 A1AV3 36 
A1AV3 H221 H6  H 0 0 N N N N N N 111.854 -14.793 63.132 -5.399 0.543  1.338  H221 A1AV3 37 
A1AV3 H241 H7  H 0 0 N N N N N N 110.131 -14.294 66.252 -3.935 0.266  -1.982 H241 A1AV3 38 
A1AV3 H261 H8  H 0 0 N N N N N N 107.926 -10.923 64.787 -3.332 4.462  -2.372 H261 A1AV3 39 
A1AV3 H013 H9  H 0 0 N N N N N N 118.271 -15.482 67.003 -0.771 -3.103 -2.896 H013 A1AV3 40 
A1AV3 H012 H10 H 0 0 N N N N N N 116.831 -14.789 66.183 -2.523 -3.284 -2.634 H012 A1AV3 41 
A1AV3 H011 H11 H 0 0 N N N N N N 117.307 -14.201 67.813 -1.729 -1.726 -2.300 H011 A1AV3 42 
A1AV3 H021 H12 H 0 0 N N N N N N 116.341 -16.989 67.092 -2.143 -2.871 -0.181 H021 A1AV3 43 
A1AV3 H033 H13 H 0 0 N N N N N N 116.595 -17.407 69.552 -0.536 -5.160 -1.404 H033 A1AV3 44 
A1AV3 H032 H14 H 0 0 N N N N N N 118.140 -17.041 68.712 -1.142 -5.094 0.269  H032 A1AV3 45 
A1AV3 H031 H15 H 0 0 N N N N N N 117.342 -15.781 69.713 -2.288 -5.173 -1.091 H031 A1AV3 46 
A1AV3 H042 H16 H 0 0 N N N N N N 114.897 -15.281 69.069 0.233  -3.100 0.625  H042 A1AV3 47 
A1AV3 H041 H17 H 0 0 N N N N N N 114.305 -16.605 68.009 0.774  -2.991 -1.067 H041 A1AV3 48 
A1AV3 H051 H18 H 0 0 N N N N N N 115.010 -14.669 66.171 -0.361 -0.774 -1.259 H051 A1AV3 49 
A1AV3 H121 H19 H 0 0 N N N N N N 115.686 -8.927  71.163 7.354  0.877  -1.850 H121 A1AV3 50 
A1AV3 H141 H20 H 0 0 N N N N N N 114.222 -5.465  69.066 8.165  1.571  2.269  H141 A1AV3 51 
A1AV3 H251 H21 H 0 0 N N N N N N 108.679 -12.314 66.681 -3.330 2.245  -3.363 H251 A1AV3 52 
A1AV3 H1   H22 H 0 1 N N N N N N 112.517 -17.898 65.141 -2.902 -1.774 2.812  H1   A1AV3 53 
A1AV3 H301 H23 H 0 0 N N N N N N 112.243 -17.490 63.414 -4.460 -0.964 3.106  H301 A1AV3 54 
A1AV3 H061 H24 H 0 0 N N N N N N 114.861 -13.332 68.604 1.413  -0.408 1.021  H061 A1AV3 55 
A1AV3 H171 H25 H 0 0 N N N N N N 113.205 -9.592  66.447 3.394  0.145  1.647  H171 A1AV3 56 
A1AV3 H201 H26 H 0 0 N N N N N N 113.505 -15.318 64.636 -2.699 -1.080 -0.447 H201 A1AV3 57 
A1AV3 H271 H27 H 0 0 N N N N N N 108.590 -11.535 62.598 -3.919 4.670  -0.082 H271 A1AV3 58 
A1AV3 H311 H28 H 0 0 N N N N N N 110.882 -19.184 64.163 -4.753 -3.140 2.166  H311 A1AV3 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AV3 O29 C28  DOUB N N 1  
A1AV3 C28 N27  SING N N 2  
A1AV3 C28 C23  SING N N 3  
A1AV3 N27 C26  SING N N 4  
A1AV3 C22 C23  SING N N 5  
A1AV3 C22 C21  SING N N 6  
A1AV3 C23 C24  DOUB N N 7  
A1AV3 O31 C30  SING N N 8  
A1AV3 C30 C21  SING N N 9  
A1AV3 C26 C25  DOUB N N 10 
A1AV3 C21 N20  SING N N 11 
A1AV3 N20 C18  SING N N 12 
A1AV3 C24 C25  SING N N 13 
A1AV3 O08 C07  DOUB N N 14 
A1AV3 C18 C05  SING N N 15 
A1AV3 C18 O19  DOUB N N 16 
A1AV3 C07 N06  SING N N 17 
A1AV3 C07 C09  SING N N 18 
A1AV3 C05 N06  SING N N 19 
A1AV3 C05 C04  SING N N 20 
A1AV3 C01 C02  SING N N 21 
A1AV3 N17 C09  SING Y N 22 
A1AV3 N17 C16  SING Y N 23 
A1AV3 C02 C04  SING N N 24 
A1AV3 C02 C03  SING N N 25 
A1AV3 C09 C10  DOUB Y N 26 
A1AV3 C15 C16  DOUB Y N 27 
A1AV3 C15 C14  SING Y N 28 
A1AV3 C16 C11  SING Y N 29 
A1AV3 C10 C11  SING Y N 30 
A1AV3 C14 C13  DOUB Y N 31 
A1AV3 C11 C12  DOUB Y N 32 
A1AV3 C13 C12  SING Y N 33 
A1AV3 C10 H101 SING N N 34 
A1AV3 C13 H131 SING N N 35 
A1AV3 C15 H151 SING N N 36 
A1AV3 C21 H211 SING N N 37 
A1AV3 C22 H222 SING N N 38 
A1AV3 C22 H221 SING N N 39 
A1AV3 C24 H241 SING N N 40 
A1AV3 C26 H261 SING N N 41 
A1AV3 C01 H013 SING N N 42 
A1AV3 C01 H012 SING N N 43 
A1AV3 C01 H011 SING N N 44 
A1AV3 C02 H021 SING N N 45 
A1AV3 C03 H033 SING N N 46 
A1AV3 C03 H032 SING N N 47 
A1AV3 C03 H031 SING N N 48 
A1AV3 C04 H042 SING N N 49 
A1AV3 C04 H041 SING N N 50 
A1AV3 C05 H051 SING N N 51 
A1AV3 C12 H121 SING N N 52 
A1AV3 C14 H141 SING N N 53 
A1AV3 C25 H251 SING N N 54 
A1AV3 C30 H1   SING N N 55 
A1AV3 C30 H301 SING N N 56 
A1AV3 N06 H061 SING N N 57 
A1AV3 N17 H171 SING N N 58 
A1AV3 N20 H201 SING N N 59 
A1AV3 N27 H271 SING N N 60 
A1AV3 O31 H311 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AV3 SMILES           ACDLabs              12.01 "O=C1NC=CC=C1CC(CO)NC(=O)C(CC(C)C)NC(=O)c1cc2ccccc2[NH]1"                                                                                                                                               
A1AV3 InChI            InChI                1.06  "InChI=1S/C23H28N4O4/c1-14(2)10-19(27-23(31)20-12-15-6-3-4-8-18(15)26-20)22(30)25-17(13-28)11-16-7-5-9-24-21(16)29/h3-9,12,14,17,19,26,28H,10-11,13H2,1-2H3,(H,24,29)(H,25,30)(H,27,31)/t17-,19-/m0/s1" 
A1AV3 InChIKey         InChI                1.06  QGBHNSLEOAYSRW-HKUYNNGSSA-N                                                                                                                                                                             
A1AV3 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)c1[nH]c2ccccc2c1)C(=O)N[C@H](CO)CC3=CC=CNC3=O"                                                                                                                                       
A1AV3 SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)c1[nH]c2ccccc2c1)C(=O)N[CH](CO)CC3=CC=CNC3=O"                                                                                                                                         
A1AV3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](CC1=CC=CNC1=O)CO)NC(=O)c2cc3ccccc3[nH]2"                                                                                                                                     
A1AV3 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1=CC=CNC1=O)CO)NC(=O)c2cc3ccccc3[nH]2"                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AV3 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(2S)-1-{[(2S)-1-hydroxy-3-(2-oxo-1,2-dihydropyridin-3-yl)propan-2-yl]amino}-4-methyl-1-oxopentan-2-yl]-1H-indole-2-carboxamide"                             
A1AV3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-(2-oxidanylidene-1~{H}-pyridin-3-yl)propan-2-yl]amino]pentan-2-yl]-1~{H}-indole-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AV3 "Create component" 2024-06-27 RCSB 
A1AV3 "Modify PCM"       2024-09-27 PDBE 
A1AV3 "Initial release"  2025-01-15 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1AV3 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C30 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
