data_9I3
# 
_chem_comp.id                                    9I3 
_chem_comp.name                                  "3-[(3-chlorophenyl)methyl]-6-[(4-chlorophenyl)methyl]-2,4-dihydro-1H-pyrido[2,3-c][2,7]naphthyridin-5-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H21 Cl2 N3 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-01-15 
_chem_comp.pdbx_modified_date                    2024-08-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        450.360 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9I3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7WKE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9I3 C11 C1  C  0 1 N N N N N N -28.766 -17.736 47.284 -0.014 -2.702 0.193  C11 9I3 1  
9I3 C12 C2  C  0 1 N N N N N N -29.575 -17.781 48.338 0.471  -1.652 -0.504 C12 9I3 2  
9I3 C13 C3  C  0 1 N N N N N N -31.085 -17.984 48.157 1.946  -1.351 -0.568 C13 9I3 3  
9I3 C15 C4  C  0 1 Y N N N N N -27.418 -17.563 47.441 -1.460 -2.938 0.193  C15 9I3 4  
9I3 C16 C5  C  0 1 Y N N N N N -26.883 -17.433 48.703 -2.302 -2.069 -0.525 C16 9I3 5  
9I3 C21 C6  C  0 1 Y N N N N N -24.729 -17.210 47.816 -4.158 -3.277 0.121  C21 9I3 6  
9I3 C25 C7  C  0 1 Y N N N N N -26.690 -15.869 51.227 -3.049 1.029  -1.064 C25 9I3 7  
9I3 C30 C8  C  0 1 Y N N N N N -27.638 -14.897 50.956 -4.207 0.916  -0.317 C30 9I3 8  
9I3 C01 C9  C  0 1 Y N N N N N -34.967 -15.304 46.909 4.751  1.848  -0.175 C01 9I3 9  
9I3 C02 C10 C  0 1 Y N N N N N -35.886 -15.687 47.868 5.022  2.285  1.109  C02 9I3 10 
9I3 C03 C11 C  0 1 Y N N N N N -35.779 -16.930 48.460 4.998  1.391  2.163  C03 9I3 11 
9I3 C04 C12 C  0 1 Y N N N N N -34.755 -17.785 48.092 4.702  0.060  1.934  C04 9I3 12 
9I3 C05 C13 C  0 1 Y N N N N N -33.828 -17.408 47.135 4.431  -0.377 0.651  C05 9I3 13 
9I3 C06 C14 C  0 1 Y N N N N N -33.937 -16.162 46.538 4.456  0.516  -0.404 C06 9I3 14 
9I3 C07 C15 C  0 1 N N N N N N -32.709 -18.382 46.756 4.109  -1.828 0.402  C07 9I3 15 
9I3 C09 C16 C  0 1 N N N N N N -30.728 -18.561 46.055 2.329  -3.469 0.515  C09 9I3 16 
9I3 C10 C17 C  0 1 N N N N N N -29.351 -17.882 45.925 0.879  -3.630 0.973  C10 9I3 17 
9I3 C18 C18 C  0 1 N N N N N N -29.017 -17.648 49.619 -0.422 -0.805 -1.207 C18 9I3 18 
9I3 C19 C19 C  0 1 Y N N N N N -26.588 -17.515 46.370 -2.019 -4.013 0.896  C19 9I3 19 
9I3 C20 C20 C  0 1 Y N N N N N -25.255 -17.340 46.547 -3.391 -4.173 0.850  C20 9I3 20 
9I3 C24 C21 C  0 1 N N N N N N -27.072 -17.335 51.070 -2.618 -0.103 -1.960 C24 9I3 21 
9I3 C26 C22 C  0 1 Y N N N N N -25.409 -15.519 51.621 -2.290 2.183  -0.993 C26 9I3 22 
9I3 C27 C23 C  0 1 Y N N N N N -25.081 -14.183 51.758 -2.688 3.224  -0.176 C27 9I3 23 
9I3 C28 C24 C  0 1 Y N N N N N -26.035 -13.211 51.495 -3.847 3.111  0.572  C28 9I3 24 
9I3 C29 C25 C  0 1 Y N N N N N -27.311 -13.564 51.094 -4.606 1.957  0.501  C29 9I3 25 
9I3 N08 N1  N  0 1 N N N N N N -31.519 -17.878 46.890 2.659  -2.035 0.515  N08 9I3 26 
9I3 N17 N2  N  0 1 N N N N N N -27.682 -17.480 49.767 -1.747 -1.014 -1.212 N17 9I3 27 
9I3 N22 N3  N  0 1 Y N N N N N -25.553 -17.260 48.880 -3.612 -2.272 -0.533 N22 9I3 28 
9I3 O23 O1  O  0 1 N N N N N N -29.712 -17.684 50.579 0.028  0.143  -1.826 O23 9I3 29 
9I3 CL1 CL1 CL 0 0 N N N N N N -35.128 -13.689 46.160 4.775  2.971  -1.499 CL1 9I3 30 
9I3 CL2 CL2 CL 0 0 N N N N N N -25.632 -11.482 51.666 -4.348 4.419  1.598  CL2 9I3 31 
9I3 H1  H1  H  0 1 N N N N N N -31.607 -17.228 48.762 2.340  -1.686 -1.527 H1  9I3 32 
9I3 H2  H2  H  0 1 N N N N N N -31.342 -18.989 48.524 2.097  -0.275 -0.474 H2  9I3 33 
9I3 H3  H3  H  0 1 N N N N N N -23.667 -17.070 47.955 -5.230 -3.407 0.088  H3  9I3 34 
9I3 H4  H4  H  0 1 N N N N N N -28.630 -15.181 50.638 -4.799 0.015  -0.372 H4  9I3 35 
9I3 H5  H5  H  0 1 N N N N N N -36.684 -15.017 48.153 5.254  3.325  1.288  H5  9I3 36 
9I3 H6  H6  H  0 1 N N N N N N -36.494 -17.235 49.210 5.209  1.733  3.165  H6  9I3 37 
9I3 H7  H7  H  0 1 N N N N N N -34.678 -18.757 48.556 4.683  -0.638 2.757  H7  9I3 38 
9I3 H8  H8  H  0 1 N N N N N N -33.224 -15.858 45.786 4.244  0.174  -1.406 H8  9I3 39 
9I3 H9  H9  H  0 1 N N N N N N -32.846 -18.679 45.706 4.439  -2.107 -0.599 H9  9I3 40 
9I3 H10 H10 H  0 1 N N N N N N -32.786 -19.270 47.401 4.623  -2.446 1.139  H10 9I3 41 
9I3 H11 H11 H  0 1 N N N N N N -31.203 -18.605 45.064 2.992  -3.999 1.200  H11 9I3 42 
9I3 H12 H12 H  0 1 N N N N N N -30.591 -19.582 46.442 2.444  -3.872 -0.492 H12 9I3 43 
9I3 H13 H13 H  0 1 N N N N N N -28.690 -18.501 45.301 0.807  -3.394 2.034  H13 9I3 44 
9I3 H14 H14 H  0 1 N N N N N N -29.468 -16.891 45.463 0.561  -4.659 0.810  H14 9I3 45 
9I3 H15 H15 H  0 1 N N N N N N -26.990 -17.616 45.373 -1.397 -4.696 1.455  H15 9I3 46 
9I3 H16 H16 H  0 1 N N N N N N -24.600 -17.302 45.689 -3.861 -4.989 1.378  H16 9I3 47 
9I3 H17 H17 H  0 1 N N N N N N -27.786 -17.625 51.855 -3.496 -0.645 -2.309 H17 9I3 48 
9I3 H18 H18 H  0 1 N N N N N N -26.175 -17.968 51.139 -2.074 0.298  -2.815 H18 9I3 49 
9I3 H19 H19 H  0 1 N N N N N N -24.672 -16.284 51.820 -1.386 2.270  -1.577 H19 9I3 50 
9I3 H20 H20 H  0 1 N N N N N N -24.087 -13.897 52.068 -2.095 4.124  -0.121 H20 9I3 51 
9I3 H21 H21 H  0 1 N N N N N N -28.047 -12.800 50.890 -5.510 1.868  1.085  H21 9I3 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9I3 C10 C09 SING N N 1  
9I3 C10 C11 SING N N 2  
9I3 C09 N08 SING N N 3  
9I3 CL1 C01 SING N N 4  
9I3 C19 C20 DOUB Y N 5  
9I3 C19 C15 SING Y N 6  
9I3 C06 C01 DOUB Y N 7  
9I3 C06 C05 SING Y N 8  
9I3 C20 C21 SING Y N 9  
9I3 C07 N08 SING N N 10 
9I3 C07 C05 SING N N 11 
9I3 N08 C13 SING N N 12 
9I3 C01 C02 SING Y N 13 
9I3 C05 C04 DOUB Y N 14 
9I3 C11 C15 SING N N 15 
9I3 C11 C12 DOUB N N 16 
9I3 C15 C16 DOUB Y N 17 
9I3 C21 N22 DOUB Y N 18 
9I3 C02 C03 DOUB Y N 19 
9I3 C04 C03 SING Y N 20 
9I3 C13 C12 SING N N 21 
9I3 C12 C18 SING N N 22 
9I3 C16 N22 SING Y N 23 
9I3 C16 N17 SING N N 24 
9I3 C18 N17 SING N N 25 
9I3 C18 O23 DOUB N N 26 
9I3 N17 C24 SING N N 27 
9I3 C30 C29 DOUB Y N 28 
9I3 C30 C25 SING Y N 29 
9I3 C24 C25 SING N N 30 
9I3 C29 C28 SING Y N 31 
9I3 C25 C26 DOUB Y N 32 
9I3 C28 CL2 SING N N 33 
9I3 C28 C27 DOUB Y N 34 
9I3 C26 C27 SING Y N 35 
9I3 C13 H1  SING N N 36 
9I3 C13 H2  SING N N 37 
9I3 C21 H3  SING N N 38 
9I3 C30 H4  SING N N 39 
9I3 C02 H5  SING N N 40 
9I3 C03 H6  SING N N 41 
9I3 C04 H7  SING N N 42 
9I3 C06 H8  SING N N 43 
9I3 C07 H9  SING N N 44 
9I3 C07 H10 SING N N 45 
9I3 C09 H11 SING N N 46 
9I3 C09 H12 SING N N 47 
9I3 C10 H13 SING N N 48 
9I3 C10 H14 SING N N 49 
9I3 C19 H15 SING N N 50 
9I3 C20 H16 SING N N 51 
9I3 C24 H17 SING N N 52 
9I3 C24 H18 SING N N 53 
9I3 C26 H19 SING N N 54 
9I3 C27 H20 SING N N 55 
9I3 C29 H21 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9I3 InChI            InChI                1.03  "InChI=1S/C25H21Cl2N3O/c26-19-8-6-17(7-9-19)15-30-24-22(5-2-11-28-24)21-10-12-29(16-23(21)25(30)31)14-18-3-1-4-20(27)13-18/h1-9,11,13H,10,12,14-16H2" 
9I3 InChIKey         InChI                1.03  JCFSCDLNZWVEMF-UHFFFAOYSA-N                                                                                                                           
9I3 SMILES_CANONICAL CACTVS               3.385 "Clc1ccc(CN2C(=O)C3=C(CCN(Cc4cccc(Cl)c4)C3)c5cccnc25)cc1"                                                                                             
9I3 SMILES           CACTVS               3.385 "Clc1ccc(CN2C(=O)C3=C(CCN(Cc4cccc(Cl)c4)C3)c5cccnc25)cc1"                                                                                             
9I3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cl)CN2CCC3=C(C2)C(=O)N(c4c3cccn4)Cc5ccc(cc5)Cl"                                                                                           
9I3 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cl)CN2CCC3=C(C2)C(=O)N(c4c3cccn4)Cc5ccc(cc5)Cl"                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           9I3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[(3-chlorophenyl)methyl]-6-[(4-chlorophenyl)methyl]-2,4-dihydro-1~{H}-pyrido[2,3-c][2,7]naphthyridin-5-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9I3 "Create component" 2022-01-15 PDBJ 
9I3 "Initial release"  2024-09-04 RCSB 
# 
