data_6I3
# 
_chem_comp.id                                    6I3 
_chem_comp.name                                  "2-(1-methylbenzimidazol-2-yl)sulfanyl-N-[(E)-(2,3,4-trimethoxyphenyl)methylideneamino]ethanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H22 N4 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-15 
_chem_comp.pdbx_modified_date                    2022-09-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        414.478 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6I3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7WVA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6I3 C10 C1  C 0 1 N N N -3.894 24.136 -31.683 0.591  0.007  0.002  C10 6I3 1  
6I3 C17 C2  C 0 1 Y N N -6.084 22.425 -27.937 6.874  0.259  0.032  C17 6I3 2  
6I3 C20 C3  C 0 1 Y N N -5.894 20.357 -26.075 8.459  -2.015 0.092  C20 6I3 3  
6I3 C21 C4  C 0 1 Y N N -4.864 21.267 -26.152 7.088  -2.151 0.086  C21 6I3 4  
6I3 C24 C5  C 0 1 Y N N -5.936 18.387 -31.325 -4.425 0.139  -0.030 C24 6I3 5  
6I3 C26 C6  C 0 1 N N N -5.857 17.980 -28.961 -3.030 1.562  -1.327 C26 6I3 6  
6I3 C01 C7  C 0 1 N N N -8.670 17.006 -35.033 -8.983 -1.309 -0.015 C01 6I3 7  
6I3 C03 C8  C 0 1 Y N N -7.421 17.663 -33.160 -6.731 -0.545 -0.023 C03 6I3 8  
6I3 C04 C9  C 0 1 Y N N -7.423 18.985 -33.629 -6.343 -1.878 0.004  C04 6I3 9  
6I3 C05 C10 C 0 1 Y N N -6.705 19.975 -32.974 -5.005 -2.212 0.019  C05 6I3 10 
6I3 C06 C11 C 0 1 Y N N -5.946 19.716 -31.815 -4.034 -1.207 0.002  C06 6I3 11 
6I3 C07 C12 C 0 1 N N N -5.205 20.812 -31.180 -2.604 -1.561 0.019  C07 6I3 12 
6I3 C12 C13 C 0 1 N N N -3.140 25.228 -30.867 2.054  -0.355 0.018  C12 6I3 13 
6I3 C14 C14 C 0 1 Y N N -4.639 24.130 -28.383 4.667  0.457  0.015  C14 6I3 14 
6I3 C16 C15 C 0 1 Y N N -4.945 22.330 -27.102 6.278  -1.014 0.057  C16 6I3 15 
6I3 C18 C16 C 0 1 Y N N -7.128 21.478 -27.846 8.255  0.377  0.038  C18 6I3 16 
6I3 C19 C17 C 0 1 Y N N -7.033 20.462 -26.919 9.041  -0.757 0.068  C19 6I3 17 
6I3 C23 C18 C 0 1 N N N -6.789 24.060 -29.767 5.956  2.631  -0.032 C23 6I3 18 
6I3 C27 C19 C 0 1 Y N N -6.672 17.356 -31.989 -5.773 0.463  -0.040 C27 6I3 19 
6I3 C29 C20 C 0 1 N N N -7.809 15.453 -30.997 -6.346 2.415  1.194  C29 6I3 20 
6I3 N08 N1  N 0 1 N N N -4.642 21.817 -31.801 -1.704 -0.626 0.003  N08 6I3 21 
6I3 N09 N2  N 0 1 N N N -3.983 22.788 -31.136 -0.344 -0.963 0.018  N09 6I3 22 
6I3 N15 N3  N 0 1 Y N N -4.047 23.412 -27.401 4.933  -0.826 0.045  N15 6I3 23 
6I3 N22 N4  N 0 1 Y N N -5.897 23.569 -28.754 5.832  1.171  0.001  N22 6I3 24 
6I3 O02 O1  O 0 1 N N N -8.111 16.664 -33.776 -8.052 -0.225 -0.034 O02 6I3 25 
6I3 O11 O2  O 0 1 N N N -4.402 24.395 -32.719 0.255  1.173  -0.021 O11 6I3 26 
6I3 O25 O3  O 0 1 N N N -5.205 18.092 -30.222 -3.486 1.121  -0.047 O25 6I3 27 
6I3 O28 O4  O 0 1 N N N -6.600 16.092 -31.472 -6.159 1.768  -0.067 O28 6I3 28 
6I3 S13 S1  S 0 1 N N N -4.028 25.615 -29.236 3.050  1.156  -0.010 S13 6I3 29 
6I3 H1  H1  H 0 1 N N N -5.836 19.549 -25.361 9.085  -2.895 0.115  H1  6I3 30 
6I3 H2  H2  H 0 1 N N N -4.006 21.178 -25.502 6.641  -3.134 0.104  H2  6I3 31 
6I3 H3  H3  H 0 1 N N N -5.116 17.738 -28.185 -2.285 2.346  -1.197 H3  6I3 32 
6I3 H4  H4  H 0 1 N N N -6.347 18.934 -28.716 -2.585 0.723  -1.862 H4  6I3 33 
6I3 H5  H5  H 0 1 N N N -6.612 17.182 -29.008 -3.872 1.952  -1.898 H5  6I3 34 
6I3 H6  H6  H 0 1 N N N -9.204 16.137 -35.446 -8.827 -1.937 -0.892 H6  6I3 35 
6I3 H7  H7  H 0 1 N N N -9.374 17.842 -34.906 -8.832 -1.901 0.887  H7  6I3 36 
6I3 H8  H8  H 0 1 N N N -7.867 17.304 -35.722 -9.999 -0.915 -0.026 H8  6I3 37 
6I3 H9  H9  H 0 1 N N N -7.991 19.236 -34.512 -7.091 -2.656 0.017  H9  6I3 38 
6I3 H10 H10 H 0 1 N N N -6.729 20.981 -33.367 -4.708 -3.250 0.041  H10 6I3 39 
6I3 H11 H11 H 0 1 N N N -5.116 20.787 -30.104 -2.305 -2.599 0.043  H11 6I3 40 
6I3 H12 H12 H 0 1 N N N -2.124 24.870 -30.644 2.278  -0.921 0.922  H12 6I3 41 
6I3 H13 H13 H 0 1 N N N -3.081 26.147 -31.469 2.288  -0.961 -0.857 H13 6I3 42 
6I3 H14 H14 H 0 1 N N N -7.989 21.549 -28.494 8.715  1.354  0.019  H14 6I3 43 
6I3 H15 H15 H 0 1 N N N -7.831 19.739 -26.833 10.117 -0.664 0.072  H15 6I3 44 
6I3 H16 H16 H 0 1 N N N -7.678 23.414 -29.818 5.984  3.016  0.987  H16 6I3 45 
6I3 H17 H17 H 0 1 N N N -7.096 25.087 -29.519 6.874  2.906  -0.551 H17 6I3 46 
6I3 H18 H18 H 0 1 N N N -6.276 24.056 -30.740 5.101  3.056  -0.558 H18 6I3 47 
6I3 H19 H19 H 0 1 N N N -7.569 14.449 -30.618 -7.118 1.893  1.759  H19 6I3 48 
6I3 H20 H20 H 0 1 N N N -8.248 16.055 -30.188 -5.411 2.397  1.754  H20 6I3 49 
6I3 H21 H21 H 0 1 N N N -8.529 15.370 -31.824 -6.652 3.448  1.030  H21 6I3 50 
6I3 H22 H22 H 0 1 N N N -3.551 22.581 -30.258 -0.075 -1.895 0.041  H22 6I3 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6I3 C01 O02 SING N N 1  
6I3 O02 C03 SING N N 2  
6I3 C04 C03 DOUB Y N 3  
6I3 C04 C05 SING Y N 4  
6I3 C03 C27 SING Y N 5  
6I3 C05 C06 DOUB Y N 6  
6I3 O11 C10 DOUB N N 7  
6I3 C27 O28 SING N N 8  
6I3 C27 C24 DOUB Y N 9  
6I3 C06 C24 SING Y N 10 
6I3 C06 C07 SING N N 11 
6I3 N08 C07 DOUB N E 12 
6I3 N08 N09 SING N N 13 
6I3 C10 N09 SING N N 14 
6I3 C10 C12 SING N N 15 
6I3 O28 C29 SING N N 16 
6I3 C24 O25 SING N N 17 
6I3 C12 S13 SING N N 18 
6I3 O25 C26 SING N N 19 
6I3 C23 N22 SING N N 20 
6I3 S13 C14 SING N N 21 
6I3 N22 C14 SING Y N 22 
6I3 N22 C17 SING Y N 23 
6I3 C14 N15 DOUB Y N 24 
6I3 C17 C18 DOUB Y N 25 
6I3 C17 C16 SING Y N 26 
6I3 C18 C19 SING Y N 27 
6I3 N15 C16 SING Y N 28 
6I3 C16 C21 DOUB Y N 29 
6I3 C19 C20 DOUB Y N 30 
6I3 C21 C20 SING Y N 31 
6I3 C20 H1  SING N N 32 
6I3 C21 H2  SING N N 33 
6I3 C26 H3  SING N N 34 
6I3 C26 H4  SING N N 35 
6I3 C26 H5  SING N N 36 
6I3 C01 H6  SING N N 37 
6I3 C01 H7  SING N N 38 
6I3 C01 H8  SING N N 39 
6I3 C04 H9  SING N N 40 
6I3 C05 H10 SING N N 41 
6I3 C07 H11 SING N N 42 
6I3 C12 H12 SING N N 43 
6I3 C12 H13 SING N N 44 
6I3 C18 H14 SING N N 45 
6I3 C19 H15 SING N N 46 
6I3 C23 H16 SING N N 47 
6I3 C23 H17 SING N N 48 
6I3 C23 H18 SING N N 49 
6I3 C29 H19 SING N N 50 
6I3 C29 H20 SING N N 51 
6I3 C29 H21 SING N N 52 
6I3 N09 H22 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6I3 InChI            InChI                1.03  "InChI=1S/C20H22N4O4S/c1-24-15-8-6-5-7-14(15)22-20(24)29-12-17(25)23-21-11-13-9-10-16(26-2)19(28-4)18(13)27-3/h5-11H,12H2,1-4H3,(H,23,25)/b21-11+" 
6I3 InChIKey         InChI                1.03  CKRLLWUTMXLHQI-SRZZPIQSSA-N                                                                                                                        
6I3 SMILES_CANONICAL CACTVS               3.385 "COc1ccc(/C=N/NC(=O)CSc2nc3ccccc3n2C)c(OC)c1OC"                                                                                                    
6I3 SMILES           CACTVS               3.385 "COc1ccc(C=NNC(=O)CSc2nc3ccccc3n2C)c(OC)c1OC"                                                                                                      
6I3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1c2ccccc2nc1SCC(=O)N/N=C/c3ccc(c(c3OC)OC)OC"                                                                                                    
6I3 SMILES           "OpenEye OEToolkits" 2.0.7 "Cn1c2ccccc2nc1SCC(=O)NN=Cc3ccc(c(c3OC)OC)OC"                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           6I3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-(1-methylbenzimidazol-2-yl)sulfanyl-~{N}-[(~{E})-(2,3,4-trimethoxyphenyl)methylideneamino]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6I3 "Create component" 2022-02-15 PDBJ 
6I3 "Initial release"  2022-09-07 RCSB 
# 
