data_5A3
#

_chem_comp.id                                   5A3
_chem_comp.name                                 "Methylenebisphosphonate inositol pentakisphosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C7 H21 O26 P7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "{[(R)-hydroxy{[(1s,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]oxy}phosphoryl]methyl}phosphonic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-08-28
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       738.042
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5A3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5DGH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5A3  O31  O1   O  0  1  N  N  N   3.947  20.583   7.046  -3.535  -2.936   2.421  O31  5A3   1  
5A3  C2   C1   C  0  1  N  N  N   0.049  20.077   9.814  -2.402  -0.040   0.253  C2   5A3   2  
5A3  C1   C2   C  0  1  N  N  S   1.579  20.198  10.088  -1.578  -1.268   0.644  C1   5A3   3  
5A3  C4   C3   C  0  1  N  N  S  -0.414  20.774  12.207  -0.299   1.264  -0.088  C4   5A3   4  
5A3  C5   C4   C  0  1  N  N  N   1.075  20.929  12.458   0.526   0.036   0.304  C5   5A3   5  
5A3  C6   C5   C  0  1  N  N  R   1.909  21.177  11.221  -0.234  -1.234  -0.086  C6   5A3   6  
5A3  C3   C6   C  0  1  N  N  R  -0.723  19.751  11.097  -1.643   1.229   0.642  C3   5A3   7  
5A3  O11  O2   O  0  1  N  N  N   2.251  20.697   8.918  -2.287  -2.454   0.281  O11  5A3   8  
5A3  O75  O3   O  0  1  N  N  N   2.239  24.403  17.253   6.240  -1.209   1.068  O75  5A3   9  
5A3  PB5  P1   P  0  1  N  N  N   3.518  23.605  16.619   6.152   0.032   0.045  PB5  5A3  10  
5A3  O55  O4   O  0  1  N  N  N   4.753  24.640  16.538   6.271   1.301   0.798  O55  5A3  11  
5A3  O65  O5   O  0  1  N  N  N   3.871  22.371  17.381   7.348  -0.070  -1.027  O65  5A3  12  
5A3  CB5  C7   C  0  1  N  N  N   3.162  23.221  14.851   4.550  -0.010  -0.825  CB5  5A3  13  
5A3  PA5  P2   P  0  1  N  N  N   1.758  21.943  14.720   3.196   0.105   0.390  PA5  5A3  14  
5A3  O25  O6   O  0  1  N  N  N   2.257  20.423  15.092   3.277  -1.035   1.330  O25  5A3  15  
5A3  O35  O7   O  0  1  N  N  N   0.670  22.393  15.798   3.325   1.485   1.209  O35  5A3  16  
5A3  O15  O8   O  0  1  N  N  N   1.189  22.068  13.230   1.781   0.068  -0.378  O15  5A3  17  
5A3  O16  O9   O  0  1  N  N  N   3.320  21.058  11.573   0.536  -2.381   0.280  O16  5A3  18  
5A3  PA6  P3   P  0  1  N  N  N   4.372  22.300  11.417   1.041  -3.475  -0.788  PA6  5A3  19  
5A3  O46  O10  O  0  1  N  N  N   5.010  22.025  10.106  -0.117  -3.994  -1.548  O46  5A3  20  
5A3  O36  O11  O  0  1  N  N  N   3.601  23.550  11.508   2.087  -2.791  -1.803  O36  5A3  21  
5A3  O26  O12  O  0  1  N  N  N   5.253  22.080  12.589   1.762  -4.688  -0.013  O26  5A3  22  
5A3  PA1  P4   P  0  1  N  N  N   3.420  19.809   8.200  -2.735  -3.571   1.350  PA1  5A3  23  
5A3  O41  O13  O  0  1  N  N  N   4.623  19.737   9.287  -1.426  -4.255   1.992  O41  5A3  24  
5A3  O21  O14  O  0  1  N  N  N   2.801  18.471   7.964  -3.621  -4.695   0.613  O21  5A3  25  
5A3  O12  O15  O  0  1  N  N  N  -0.461  21.299   9.235  -2.627  -0.047  -1.159  O12  5A3  26  
5A3  PA2  P5   P  0  1  N  N  N  -0.923  21.383   7.682  -4.097  -0.086  -1.813  PA2  5A3  27  
5A3  O42  O16  O  0  1  N  N  N  -0.202  20.307   6.971  -4.903   1.037  -1.283  O42  5A3  28  
5A3  O22  O17  O  0  1  N  N  N  -2.379  21.227   7.762  -3.977   0.048  -3.413  O22  5A3  29  
5A3  O32  O18  O  0  1  N  N  N  -0.463  22.742   7.359  -4.812  -1.481  -1.443  O32  5A3  30  
5A3  O13  O19  O  0  1  N  N  N  -2.149  19.781  10.815  -2.413   2.376   0.276  O13  5A3  31  
5A3  PA3  P6   P  0  1  N  N  N  -3.117  18.524  11.053  -2.918   3.470   1.344  PA3  5A3  32  
5A3  O43  O20  O  0  1  N  N  N  -4.462  19.053  10.764  -3.861   4.545   0.605  O43  5A3  33  
5A3  O33  O21  O  0  1  N  N  N  -2.593  17.541  10.114  -3.684   2.796   2.416  O33  5A3  34  
5A3  O23  O22  O  0  1  N  N  N  -2.904  18.198  12.497  -1.647   4.222   1.985  O23  5A3  35  
5A3  O14  O23  O  0  1  N  N  N  -0.956  20.304  13.441   0.411   2.450   0.276  O14  5A3  36  
5A3  PA4  P7   P  0  1  N  N  N  -2.180  20.973  14.244   0.859   3.566  -0.794  PA4  5A3  37  
5A3  O24  O24  O  0  1  N  N  N  -3.333  20.160  13.859   1.515   4.817  -0.021  O24  5A3  38  
5A3  O44  O25  O  0  1  N  N  N  -1.706  20.811  15.645   1.938   2.936  -1.808  O44  5A3  39  
5A3  O34  O26  O  0  1  N  N  N  -2.270  22.396  13.781  -0.326   4.023  -1.555  O34  5A3  40  
5A3  H1   H1   H  0  1  N  N  N  -0.101  19.250   9.105  -3.360  -0.065   0.773  H1   5A3  41  
5A3  H2   H2   H  0  1  N  N  N   1.967  19.203  10.353  -1.407  -1.263   1.721  H2   5A3  42  
5A3  H3   H3   H  0  1  N  N  N  -0.846  21.748  11.934  -0.470   1.258  -1.164  H3   5A3  43  
5A3  H4   H4   H  0  1  N  N  N   1.453  20.042  12.987   0.697   0.041   1.380  H4   5A3  44  
5A3  H5   H5   H  0  1  N  N  N   1.709  22.198  10.864  -0.405  -1.239  -1.162  H5   5A3  45  
5A3  H6   H6   H  0  1  N  N  N  -0.429  18.750  11.445  -1.472   1.235   1.719  H6   5A3  46  
5A3  H7   H7   H  0  1  N  N  N   2.486  25.301  17.440   6.169  -2.075   0.643  H7   5A3  47  
5A3  H8   H8   H  0  1  N  N  N   4.771  22.429  17.679   8.231  -0.054  -0.634  H8   5A3  48  
5A3  H9   H9   H  0  1  N  N  N   4.068  22.814  14.379   4.490   0.829  -1.517  H9   5A3  49  
5A3  H10  H10  H  0  1  N  N  N   2.862  24.144  14.333   4.462  -0.945  -1.379  H10  5A3  50  
5A3  H11  H11  H  0  1  N  N  N   0.538  21.693  16.427   3.280   2.277   0.655  H11  5A3  51  
5A3  H12  H12  H  0  1  N  N  N   3.635  24.005  10.675   2.873  -2.428  -1.373  H12  5A3  52  
5A3  H13  H13  H  0  1  N  N  N   6.108  21.790  12.293   2.092  -5.386  -0.595  H13  5A3  53  
5A3  H14  H14  H  0  1  N  N  N   4.798  20.608   9.624  -0.854  -4.691   1.346  H14  5A3  54  
5A3  H15  H15  H  0  1  N  N  N   2.825  18.270   7.036  -3.927  -5.402   1.199  H15  5A3  55  
5A3  H16  H16  H  0  1  N  N  N  -2.636  20.424   7.325  -4.826   0.032  -3.874  H16  5A3  56  
5A3  H17  H17  H  0  1  N  N  N   0.244  22.695   6.726  -4.338  -2.262  -1.760  H17  5A3  57  
5A3  H18  H18  H  0  1  N  N  N  -4.797  18.652   9.971  -4.203   5.236   1.190  H18  5A3  58  
5A3  H19  H19  H  0  1  N  N  N  -2.443  17.370  12.571  -1.098   4.687   1.338  H19  5A3  59  
5A3  H20  H20  H  0  1  N  N  N  -3.949  20.694  13.371   1.809   5.530  -0.605  H20  5A3  60  
5A3  H21  H21  H  0  1  N  N  N  -1.535  21.666  16.023   2.742   2.615  -1.378  H21  5A3  61  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5A3  O42  PA2  DOUB  N  N   1  
5A3  O31  PA1  DOUB  N  N   2  
5A3  O32  PA2  SING  N  N   3  
5A3  PA2  O22  SING  N  N   4  
5A3  PA2  O12  SING  N  N   5  
5A3  O21  PA1  SING  N  N   6  
5A3  PA1  O11  SING  N  N   7  
5A3  PA1  O41  SING  N  N   8  
5A3  O11  C1   SING  N  N   9  
5A3  O12  C2   SING  N  N  10  
5A3  C2   C1   SING  N  N  11  
5A3  C2   C3   SING  N  N  12  
5A3  C1   C6   SING  N  N  13  
5A3  O46  PA6  DOUB  N  N  14  
5A3  O33  PA3  DOUB  N  N  15  
5A3  O43  PA3  SING  N  N  16  
5A3  O13  PA3  SING  N  N  17  
5A3  O13  C3   SING  N  N  18  
5A3  PA3  O23  SING  N  N  19  
5A3  C3   C4   SING  N  N  20  
5A3  C6   O16  SING  N  N  21  
5A3  C6   C5   SING  N  N  22  
5A3  PA6  O36  SING  N  N  23  
5A3  PA6  O16  SING  N  N  24  
5A3  PA6  O26  SING  N  N  25  
5A3  C4   C5   SING  N  N  26  
5A3  C4   O14  SING  N  N  27  
5A3  C5   O15  SING  N  N  28  
5A3  O15  PA5  SING  N  N  29  
5A3  O14  PA4  SING  N  N  30  
5A3  O34  PA4  DOUB  N  N  31  
5A3  O24  PA4  SING  N  N  32  
5A3  PA4  O44  SING  N  N  33  
5A3  PA5  CB5  SING  N  N  34  
5A3  PA5  O25  DOUB  N  N  35  
5A3  PA5  O35  SING  N  N  36  
5A3  CB5  PB5  SING  N  N  37  
5A3  O55  PB5  DOUB  N  N  38  
5A3  PB5  O75  SING  N  N  39  
5A3  PB5  O65  SING  N  N  40  
5A3  C2   H1   SING  N  N  41  
5A3  C1   H2   SING  N  N  42  
5A3  C4   H3   SING  N  N  43  
5A3  C5   H4   SING  N  N  44  
5A3  C6   H5   SING  N  N  45  
5A3  C3   H6   SING  N  N  46  
5A3  O75  H7   SING  N  N  47  
5A3  O65  H8   SING  N  N  48  
5A3  CB5  H9   SING  N  N  49  
5A3  CB5  H10  SING  N  N  50  
5A3  O35  H11  SING  N  N  51  
5A3  O36  H12  SING  N  N  52  
5A3  O26  H13  SING  N  N  53  
5A3  O41  H14  SING  N  N  54  
5A3  O21  H15  SING  N  N  55  
5A3  O22  H16  SING  N  N  56  
5A3  O32  H17  SING  N  N  57  
5A3  O43  H18  SING  N  N  58  
5A3  O23  H19  SING  N  N  59  
5A3  O24  H20  SING  N  N  60  
5A3  O44  H21  SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5A3  SMILES            ACDLabs               12.01  "O=P(OC1C(C(C(C(OP(CP(O)(O)=O)(=O)O)C1OP(O)(O)=O)OP(O)(O)=O)OP(O)(O)=O)OP(O)(=O)O)(O)O"  
5A3  InChI             InChI                 1.03   "InChI=1S/C7H21O26P7/c8-34(9,10)1-35(11,12)28-2-3(29-36(13,14)15)5(31-38(19,20)21)7(33-40(25,26)27)6(32-39(22,23)24)4(2)30-37(16,17)18/h2-7H,1H2,(H,11,12)(H2,8,9,10)(H2,13,14,15)(H2,16,17,18)(H2,19,20,21)(H2,22,23,24)(H2,25,26,27)/t2-,3-,4+,5+,6-,7+"  
5A3  InChIKey          InChI                 1.03   IZNCMXVIYGYGJI-AQWRHFAGSA-N  
5A3  SMILES_CANONICAL  CACTVS                3.385  "O[P](O)(=O)C[P](O)(=O)O[C@@H]1[C@@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@H]1O[P](O)(O)=O"  
5A3  SMILES            CACTVS                3.385  "O[P](O)(=O)C[P](O)(=O)O[CH]1[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]1O[P](O)(O)=O"  
5A3  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "C(P(=O)(O)O)P(=O)(O)OC1[C@@H]([C@H](C([C@H]([C@@H]1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O"  
5A3  SMILES            "OpenEye OEToolkits"  1.9.2  "C(P(=O)(O)O)P(=O)(O)OC1C(C(C(C(C1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5A3  "SYSTEMATIC NAME"  ACDLabs               12.01  "{[(R)-hydroxy{[(1s,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]oxy}phosphoryl]methyl}phosphonic acid"  
5A3  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "[oxidanyl-[(2S,3R,5S,6R)-2,3,4,5,6-pentaphosphonooxycyclohexyl]oxy-phosphoryl]methylphosphonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5A3  "Create component"  2015-08-28  RCSB  
5A3  "Modify name"       2015-08-31  RCSB  
5A3  "Initial release"   2016-08-10  RCSB  
5A3  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5A3
_pdbx_chem_comp_synonyms.name        "{[(R)-hydroxy{[(1s,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]oxy}phosphoryl]methyl}phosphonic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
