data_223
#

_chem_comp.id                                   223
_chem_comp.name                                 "(3R,4R)-1-[(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)METHYL]-4-(HYDROXYMETHYL)PYRROLIDIN-3-OL"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H17 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "4'-DEAZA-1'-AZA-2'-DEOXY-1'-(9-METHYLENE)-IMMUCILLIN-A"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-10-24
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       263.296
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    223
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
223  N1      N1    N  0  1  Y  N  N  -9.357  -15.957  -38.700  -2.299   3.903   0.710  N1      223   1  
223  C2      C2    C  0  1  Y  N  N  -8.510  -15.007  -37.948  -1.434   3.573  -0.275  C2      223   2  
223  C4      C4    C  0  1  Y  N  N  -6.590  -16.030  -39.098  -2.275   1.507  -0.589  C4      223   3  
223  C5      C5    C  0  1  Y  N  N  -7.383  -16.910  -39.805  -3.206   1.758   0.415  C5      223   4  
223  C6      C6    C  0  1  Y  N  N  -8.851  -16.859  -39.579  -3.213   2.976   1.071  C6      223   5  
223  C8      C8    C  0  1  Y  N  N  -5.295  -17.288  -40.377  -3.566  -0.320  -0.354  C8      223   6  
223  N6      N6    N  0  1  N  N  N  -9.601  -17.647  -40.196  -4.144   3.249   2.087  N6      223   7  
223  N3      N3    N  0  1  Y  N  N  -7.071  -15.114  -38.219  -1.348   2.420  -0.970  N3      223   8  
223  C9      C9    C  0  1  Y  N  N  -5.269  -16.258  -39.440  -2.520   0.207  -1.051  C9      223   9  
223  N7      N7    N  0  1  Y  N  N  -6.577  -17.674  -40.579  -3.981   0.633   0.542  N7      223  10  
223  C10     C10   C  0  1  N  N  N  -4.043  -15.505  -38.978  -1.760  -0.497  -2.138  C10     223  11  
223  "N1'"   N1*   N  0  1  N  N  R  -3.463  -15.811  -37.676  -0.625  -1.242  -1.613  "N1'"   223  12  
223  "C6'"   C6*   C  0  1  N  N  N  -3.624  -17.215  -37.259   0.126  -1.934  -2.661  "C6'"   223  13  
223  "C4'"   C4*   C  0  1  N  N  R  -3.899  -17.182  -35.755   1.035  -2.828  -1.827  "C4'"   223  14  
223  "C5'"   C5*   C  0  1  N  N  N  -5.143  -17.994  -35.378   1.630  -3.977  -2.626  "C5'"   223  15  
223  "O5'"   O5*   O  0  1  N  N  N  -5.329  -19.161  -36.193   2.465  -4.741  -1.772  "O5'"   223  16  
223  "C3'"   C3*   C  0  1  N  N  S  -4.061  -15.708  -35.389   0.123  -3.293  -0.688  "C3'"   223  17  
223  "O3'"   O3*   O  0  1  N  N  N  -2.921  -15.241  -34.673   0.847  -3.286   0.533  "O3'"   223  18  
223  "C2'"   C2*   C  0  1  N  N  N  -4.101  -14.929  -36.690  -1.025  -2.281  -0.656  "C2'"   223  19  
223  H2      H2    H  0  1  N  N  N  -8.919  -14.289  -37.252  -0.713   4.337  -0.542  H2      223  20  
223  H8      H8    H  0  1  N  N  N  -4.430  -17.712  -40.865  -4.063  -1.279  -0.399  H8      223  21  
223  HN61    1HN6  H  0  0  N  N  N  -9.801  -17.276  -41.103  -5.104   3.407   1.847  HN61    223  22  
223  HN62    2HN6  H  0  0  N  N  N  -9.147  -18.533  -40.291  -3.823   3.375   3.029  HN62    223  23  
223  HN7     HN7   H  0  1  N  N  N  -6.878  -18.401  -41.196  -4.744   0.522   1.195  HN7     223  24  
223  H101    1H10  H  0  0  N  N  N  -3.258  -15.709  -39.721  -2.410  -1.202  -2.669  H101    223  25  
223  H102    2H10  H  0  0  N  N  N  -4.392  -14.467  -38.876  -1.380   0.215  -2.877  H102    223  26  
223  "H6'1"  1H6*  H  0  0  N  N  N  -4.462  -17.685  -37.796   0.703  -1.238  -3.278  "H6'1"  223  27  
223  "H6'2"  2H6*  H  0  0  N  N  N  -2.725  -17.806  -37.489  -0.531  -2.527  -3.312  "H6'2"  223  28  
223  "H4'"   H4*   H  0  1  N  N  N  -3.072  -17.646  -35.197   1.864  -2.232  -1.420  "H4'"   223  29  
223  "H5'1"  1H5*  H  0  0  N  N  N  -6.025  -17.347  -35.498   2.226  -3.590  -3.455  "H5'1"  223  30  
223  "H5'2"  2H5*  H  0  0  N  N  N  -5.009  -18.337  -34.341   0.836  -4.617  -3.015  "H5'2"  223  31  
223  "HO5'"  HO5*  H  0  0  N  N  N  -5.370  -18.906  -37.107   3.374  -4.426  -1.908  "HO5'"  223  32  
223  "H3'"   H3*   H  0  1  N  N  N  -4.966  -15.581  -34.777  -0.261  -4.305  -0.857  "H3'"   223  33  
223  "HO3'"  HO3*  H  0  0  N  N  N  -2.191  -15.137  -35.272   0.255  -3.645   1.214  "HO3'"  223  34  
223  "H2'1"  1H2*  H  0  0  N  N  N  -3.555  -13.979  -36.598  -1.946  -2.780  -0.983  "H2'1"  223  35  
223  "H2'2"  2H2*  H  0  0  N  N  N  -5.128  -14.661  -36.979  -1.191  -1.855   0.339  "H2'2"  223  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
223  N1     C6      SING  Y  N   1  
223  N1     C2      DOUB  Y  N   2  
223  C2     N3      SING  Y  N   3  
223  C2     H2      SING  N  N   4  
223  C4     C5      SING  Y  N   5  
223  C4     C9      SING  Y  N   6  
223  C4     N3      DOUB  Y  N   7  
223  C5     N7      SING  Y  N   8  
223  C5     C6      DOUB  Y  N   9  
223  C6     N6      SING  N  N  10  
223  C8     N7      SING  Y  N  11  
223  C8     C9      DOUB  Y  N  12  
223  C8     H8      SING  N  N  13  
223  N6     HN61    SING  N  N  14  
223  N6     HN62    SING  N  N  15  
223  C9     C10     SING  N  N  16  
223  N7     HN7     SING  N  N  17  
223  C10    "N1'"   SING  N  N  18  
223  C10    H101    SING  N  N  19  
223  C10    H102    SING  N  N  20  
223  "N1'"  "C6'"   SING  N  N  21  
223  "N1'"  "C2'"   SING  N  N  22  
223  "C6'"  "C4'"   SING  N  N  23  
223  "C6'"  "H6'1"  SING  N  N  24  
223  "C6'"  "H6'2"  SING  N  N  25  
223  "C4'"  "C3'"   SING  N  N  26  
223  "C4'"  "C5'"   SING  N  N  27  
223  "C4'"  "H4'"   SING  N  N  28  
223  "C5'"  "O5'"   SING  N  N  29  
223  "C5'"  "H5'1"  SING  N  N  30  
223  "C5'"  "H5'2"  SING  N  N  31  
223  "O5'"  "HO5'"  SING  N  N  32  
223  "C3'"  "C2'"   SING  N  N  33  
223  "C3'"  "O3'"   SING  N  N  34  
223  "C3'"  "H3'"   SING  N  N  35  
223  "O3'"  "HO3'"  SING  N  N  36  
223  "C2'"  "H2'1"  SING  N  N  37  
223  "C2'"  "H2'2"  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
223  SMILES            ACDLabs               10.04  "OCC3CN(Cc2cnc1c2ncnc1N)CC3O"  
223  SMILES_CANONICAL  CACTVS                3.341  "Nc1ncnc2c(CN3C[C@H](O)[C@@H](CO)C3)c[nH]c12"  
223  SMILES            CACTVS                3.341  "Nc1ncnc2c(CN3C[CH](O)[CH](CO)C3)c[nH]c12"  
223  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1c(c2c([nH]1)c(ncn2)N)C[N@@]3C[C@@H]([C@H](C3)O)CO"  
223  SMILES            "OpenEye OEToolkits"  1.5.0  "c1c(c2c([nH]1)c(ncn2)N)CN3CC(C(C3)O)CO"  
223  InChI             InChI                 1.03   "InChI=1S/C12H17N5O2/c13-12-11-10(15-6-16-12)7(1-14-11)2-17-3-8(5-18)9(19)4-17/h1,6,8-9,14,18-19H,2-5H2,(H2,13,15,16)/t8-,9+/m1/s1"  
223  InChIKey          InChI                 1.03   HYYXEHQHMXTTFP-BDAKNGLRSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
223  "SYSTEMATIC NAME"  ACDLabs               10.04  "(3R,4R)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-(hydroxymethyl)pyrrolidin-3-ol"  
223  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(1S,3R,4R)-1-[(4-amino-5H-pyrrolo[4,5-d]pyrimidin-7-yl)methyl]-4-(hydroxymethyl)pyrrolidin-3-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
223  "Create component"   2006-10-24  PDBJ  
223  "Modify descriptor"  2011-06-04  RCSB  
223  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     223
_pdbx_chem_comp_synonyms.name        "4'-DEAZA-1'-AZA-2'-DEOXY-1'-(9-METHYLENE)-IMMUCILLIN-A"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
