data_1E3
# 
_chem_comp.id                                    1E3 
_chem_comp.name                                  "(2S)-2,9-diaminononanoic acid" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C9 H20 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-12-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        188.267 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1E3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4I80 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1E3 O   O   O 0 1 N N N Y N Y -40.707 23.210 21.924 -4.969 -0.196 -0.899 O   1E3 1  
1E3 C   C   C 0 1 N N N Y N Y -39.569 22.829 21.652 -4.307 0.304  -0.020 C   1E3 2  
1E3 CA  CA  C 0 1 N N S Y N N -38.412 23.043 22.630 -3.050 -0.377 0.456  CA  1E3 3  
1E3 N   N   N 0 1 N N N Y Y N -38.355 24.459 23.019 -3.090 -1.797 0.080  N   1E3 4  
1E3 CB  CB  C 0 1 N N N N N N -38.603 22.145 23.853 -1.833 0.288  -0.189 CB  1E3 5  
1E3 CAJ CAJ C 0 1 N N N N N N -37.822 22.719 25.036 -0.553 -0.320 0.389  CAJ 1E3 6  
1E3 CAI CAI C 0 1 N N N N N N -38.212 21.976 26.315 0.664  0.345  -0.257 CAI 1E3 7  
1E3 CAH CAH C 0 1 N N N N N N -36.992 21.237 26.869 1.943  -0.262 0.321  CAH 1E3 8  
1E3 CAG CAG C 0 1 N N N N N N -37.411 20.389 28.072 3.161  0.403  -0.325 CAG 1E3 9  
1E3 CAF CAF C 0 1 N N N N N N -37.586 18.934 27.635 4.440  -0.205 0.253  CAF 1E3 10 
1E3 CAE CAE C 0 1 N N N N N N -37.319 18.008 28.823 5.657  0.460  -0.393 CAE 1E3 11 
1E3 NAA NAA N 0 1 N N N N N N -36.935 16.664 28.368 6.886  -0.123 0.162  NAA 1E3 12 
1E3 OXT OXT O 0 1 N Y N Y N Y -39.443 21.835 20.883 -4.688 1.469  0.527  OXT 1E3 13 
1E3 HA  H1  H 0 1 N N N Y N N -37.473 22.762 22.131 -2.979 -0.291 1.541  H1  1E3 14 
1E3 H2  H2  H 0 1 N Y N Y Y N -37.599 24.599 23.658 -3.156 -1.904 -0.921 H2  1E3 15 
1E3 H   H3  H 0 1 N N N Y Y N -38.212 25.023 22.205 -2.288 -2.290 0.444  H3  1E3 16 
1E3 H5  H5  H 0 1 N N N N N N -39.672 22.096 24.109 -1.859 0.124  -1.267 H5  1E3 17 
1E3 H6  H6  H 0 1 N N N N N N -38.234 21.134 23.626 -1.852 1.358  0.016  H6  1E3 18 
1E3 H7  H7  H 0 1 N N N N N N -36.744 22.598 24.856 -0.528 -0.156 1.466  H7  1E3 19 
1E3 H8  H8  H 0 1 N N N N N N -38.058 23.788 25.147 -0.534 -1.390 0.183  H8  1E3 20 
1E3 H9  H9  H 0 1 N N N N N N -38.574 22.698 27.062 0.638  0.182  -1.335 H9  1E3 21 
1E3 H10 H10 H 0 1 N N N N N N -39.008 21.251 26.090 0.645  1.416  -0.052 H10 1E3 22 
1E3 H11 H11 H 0 1 N N N N N N -36.573 20.585 26.089 1.969  -0.099 1.398  H11 1E3 23 
1E3 H12 H12 H 0 1 N N N N N N -36.232 21.968 27.183 1.962  -1.332 0.115  H12 1E3 24 
1E3 H13 H13 H 0 1 N N N N N N -36.635 20.447 28.850 3.135  0.240  -1.403 H13 1E3 25 
1E3 H14 H14 H 0 1 N N N N N N -38.362 20.768 28.474 3.141  1.473  -0.119 H14 1E3 26 
1E3 H15 H15 H 0 1 N N N N N N -38.614 18.781 27.275 4.466  -0.041 1.330  H15 1E3 27 
1E3 H16 H16 H 0 1 N N N N N N -36.876 18.706 26.826 4.459  -1.275 0.047  H16 1E3 28 
1E3 H17 H17 H 0 1 N N N N N N -36.504 18.428 29.431 5.632  0.297  -1.470 H17 1E3 29 
1E3 H18 H18 H 0 1 N N N N N N -38.231 17.934 29.433 5.638  1.531  -0.187 H18 1E3 30 
1E3 H19 H19 H 0 1 N N N N N N -36.766 16.079 29.161 6.897  -1.125 0.041  H19 1E3 31 
1E3 H20 H20 H 0 1 N Y N N N N -37.674 16.275 27.818 7.705  0.300  -0.249 H20 1E3 32 
1E3 HXT HXT H 0 1 N Y N Y N Y -40.302 21.524 20.624 -5.499 1.870  0.186  HXT 1E3 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1E3 C   O   DOUB N N 1  
1E3 C   CA  SING N N 2  
1E3 CA  N   SING N N 3  
1E3 CA  CB  SING N N 4  
1E3 CB  CAJ SING N N 5  
1E3 CAJ CAI SING N N 6  
1E3 CAI CAH SING N N 7  
1E3 CAH CAG SING N N 8  
1E3 CAF CAG SING N N 9  
1E3 CAF CAE SING N N 10 
1E3 NAA CAE SING N N 11 
1E3 C   OXT SING N N 12 
1E3 CA  HA  SING N N 13 
1E3 N   H2  SING N N 14 
1E3 N   H   SING N N 15 
1E3 CB  H5  SING N N 16 
1E3 CB  H6  SING N N 17 
1E3 CAJ H7  SING N N 18 
1E3 CAJ H8  SING N N 19 
1E3 CAI H9  SING N N 20 
1E3 CAI H10 SING N N 21 
1E3 CAH H11 SING N N 22 
1E3 CAH H12 SING N N 23 
1E3 CAG H13 SING N N 24 
1E3 CAG H14 SING N N 25 
1E3 CAF H15 SING N N 26 
1E3 CAF H16 SING N N 27 
1E3 CAE H17 SING N N 28 
1E3 CAE H18 SING N N 29 
1E3 NAA H19 SING N N 30 
1E3 NAA H20 SING N N 31 
1E3 OXT HXT SING N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1E3 SMILES           ACDLabs              12.01 "O=C(O)C(N)CCCCCCCN"                                                                    
1E3 InChI            InChI                1.03  "InChI=1S/C9H20N2O2/c10-7-5-3-1-2-4-6-8(11)9(12)13/h8H,1-7,10-11H2,(H,12,13)/t8-/m0/s1" 
1E3 InChIKey         InChI                1.03  KEBGMMXWUKWKGB-QMMMGPOBSA-N                                                             
1E3 SMILES_CANONICAL CACTVS               3.370 "NCCCCCCC[C@H](N)C(O)=O"                                                                
1E3 SMILES           CACTVS               3.370 "NCCCCCCC[CH](N)C(O)=O"                                                                 
1E3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C(CCC[C@@H](C(=O)O)N)CCCN"                                                             
1E3 SMILES           "OpenEye OEToolkits" 1.7.6 "C(CCCC(C(=O)O)N)CCCN"                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1E3 "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2,9-diaminononanoic acid"     
1E3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2,9-bis(azanyl)nonanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1E3 "Create component" 2012-12-18 RCSB 
1E3 "Initial release"  2013-03-06 RCSB 
1E3 "Modify backbone"  2023-11-03 PDBE 
1E3 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            1E3 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
