data_VK2
#

_chem_comp.id                                   VK2
_chem_comp.name                                 "4-[4-[5-[imidazo[1,2-a]pyridin-6-ylmethyl(methyl)amino]-1,3,4-oxadiazol-2-yl]-3-methyl-phenyl]-2,5-dimethyl-pyrazole-3-carbonitrile"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H22 N8 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-20
_chem_comp.pdbx_modified_date                   2021-09-10
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       438.484
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VK2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7OLV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VK2  C1   C1   C  0  1  N  N  N  27.025  15.099  20.211   4.565   1.988   0.521  C1   VK2   1  
VK2  C2   C2   C  0  1  Y  N  N  26.050  15.821  19.316   5.279   0.670   0.365  C2   VK2   2  
VK2  C3   C3   C  0  1  Y  N  N  24.733  16.242  19.811   4.916  -0.422   1.171  C3   VK2   3  
VK2  N6   N1   N  0  1  Y  N  N  23.747   6.248  28.053  -7.450  -1.012  -0.540  N6   VK2   4  
VK2  C7   C4   C  0  1  Y  N  N  25.545  17.085  15.874   7.922  -1.043  -1.545  C7   VK2   5  
VK2  C8   C5   C  0  1  Y  N  N  26.352  16.071  18.025   6.260   0.542  -0.552  C8   VK2   6  
VK2  C9   C6   C  0  1  Y  N  N  26.150  13.614  21.925   2.156   1.535   0.267  C9   VK2   7  
VK2  C10  C7   C  0  1  Y  N  N  25.502  12.512  23.621   0.090   0.975   0.550  C10  VK2   8  
VK2  C11  C8   C  0  1  Y  N  N  25.205  11.340  24.449  -1.348   0.725   0.330  C11  VK2   9  
VK2  C12  C9   C  0  1  Y  N  N  25.697  10.101  24.026  -1.924   1.002  -0.913  C12  VK2  10  
VK2  C13  C10  C  0  1  Y  N  N  25.482   8.964  24.783  -3.265   0.767  -1.118  C13  VK2  11  
VK2  C14  C11  C  0  1  Y  N  N  24.770   9.036  25.970  -4.049   0.253  -0.084  C14  VK2  12  
VK2  C15  C12  C  0  1  Y  N  N  24.307  10.274  26.407  -3.475  -0.024   1.158  C15  VK2  13  
VK2  C16  C13  C  0  1  Y  N  N  24.508  11.437  25.667  -2.134   0.204   1.362  C16  VK2  14  
VK2  C19  C14  C  0  1  Y  N  N  25.609   7.035  27.376  -6.477   0.969  -0.563  C19  VK2  15  
VK2  C20  C15  C  0  1  N  N  N  27.090   7.150  27.220  -6.243   2.454  -0.666  C20  VK2  16  
VK2  C21  C16  C  0  1  N  N  N  22.869   5.334  28.769  -8.498  -2.031  -0.625  C21  VK2  17  
VK2  C22  C17  C  0  1  Y  N  N  23.412   7.320  27.280  -6.125  -1.240  -0.292  C22  VK2  18  
VK2  N7   N2   N  0  1  N  N  N  20.960   7.985  26.909  -5.017  -3.520   0.118  N7   VK2  19  
VK2  C23  C18  C  0  1  N  N  N  22.056   7.699  27.062  -5.507  -2.511  -0.064  C23  VK2  20  
VK2  N5   N3   N  0  1  Y  N  N  25.094   6.072  28.113  -7.628   0.367  -0.705  N5   VK2  21  
VK2  C18  C19  C  0  1  Y  N  N  24.573   7.835  26.813  -5.492   0.001  -0.305  C18  VK2  22  
VK2  C17  C20  C  0  1  N  N  N  23.959  12.730  26.208  -1.513  -0.100   2.701  C17  VK2  23  
VK2  O    O1   O  0  1  Y  N  N  25.944  12.334  22.330   0.963   1.472  -0.354  O    VK2  24  
VK2  N3   N4   N  0  1  Y  N  N  25.494  13.753  23.975   0.755   0.757   1.659  N3   VK2  25  
VK2  N4   N5   N  0  1  Y  N  N  25.898  14.486  22.857   1.986   1.090   1.490  N4   VK2  26  
VK2  N    N6   N  0  1  N  N  N  26.571  13.788  20.667   3.341   1.979  -0.284  N    VK2  27  
VK2  C    C21  C  0  1  N  N  N  26.561  12.710  19.683   3.375   2.441  -1.673  C    VK2  28  
VK2  N2   N7   N  0  1  Y  N  N  25.446  16.724  17.205   6.913  -0.646  -0.711  N2   VK2  29  
VK2  C6   C22  C  0  1  Y  N  N  24.377  17.694  15.566   8.181  -2.341  -1.269  C6   VK2  30  
VK2  N1   N8   N  0  1  Y  N  N  23.531  17.737  16.658   7.360  -2.741  -0.294  N1   VK2  31  
VK2  C5   C23  C  0  1  Y  N  N  24.194  17.138  17.647   6.581  -1.729   0.061  C5   VK2  32  
VK2  C4   C24  C  0  1  Y  N  N  23.841  16.880  19.001   5.562  -1.610   1.028  C4   VK2  33  
VK2  H1   H1   H  0  1  N  N  N  27.965  14.963  19.656   4.309   2.140   1.570  H1   VK2  34  
VK2  H2   H2   H  0  1  N  N  N  27.209  15.726  21.096   5.215   2.795   0.185  H2   VK2  35  
VK2  H3   H3   H  0  1  N  N  N  24.466  16.042  20.838   4.127  -0.318   1.902  H3   VK2  36  
VK2  H4   H4   H  0  1  N  N  N  26.384  16.915  15.215   8.419  -0.434  -2.286  H4   VK2  37  
VK2  H5   H5   H  0  1  N  N  N  27.307  15.760  17.628   6.532   1.388  -1.167  H5   VK2  38  
VK2  H6   H6   H  0  1  N  N  N  26.249  10.032  23.101  -1.317   1.400  -1.713  H6   VK2  39  
VK2  H7   H7   H  0  1  N  N  N  25.871   8.014  24.447  -3.710   0.982  -2.078  H7   VK2  40  
VK2  H8   H8   H  0  1  N  N  N  23.777  10.334  27.346  -4.083  -0.422   1.957  H8   VK2  41  
VK2  H9   H9   H  0  1  N  N  N  27.583   6.348  27.790  -6.362   2.910   0.317  H9   VK2  42  
VK2  H10  H10  H  0  1  N  N  N  27.355   7.060  26.156  -5.233   2.638  -1.032  H10  VK2  43  
VK2  H11  H11  H  0  1  N  N  N  27.424   8.127  27.599  -6.965   2.888  -1.357  H11  VK2  44  
VK2  H12  H12  H  0  1  N  N  N  23.473   4.579  29.292  -8.582  -2.382  -1.654  H12  VK2  45  
VK2  H13  H13  H  0  1  N  N  N  22.272   5.897  29.501  -8.244  -2.869   0.024  H13  VK2  46  
VK2  H14  H14  H  0  1  N  N  N  22.198   4.835  28.054  -9.449  -1.602  -0.308  H14  VK2  47  
VK2  H15  H15  H  0  1  N  N  N  22.933  12.877  25.839  -1.578   0.780   3.341  H15  VK2  48  
VK2  H16  H16  H  0  1  N  N  N  23.951  12.693  27.307  -2.045  -0.929   3.168  H16  VK2  49  
VK2  H17  H17  H  0  1  N  N  N  24.592  13.565  25.874  -0.466  -0.372   2.563  H17  VK2  50  
VK2  H18  H18  H  0  1  N  N  N  26.200  11.785  20.156   3.597   1.600  -2.331  H18  VK2  51  
VK2  H19  H19  H  0  1  N  N  N  25.895  12.980  18.850   2.407   2.865  -1.939  H19  VK2  52  
VK2  H20  H20  H  0  1  N  N  N  27.580  12.553  19.301   4.148   3.202  -1.784  H20  VK2  53  
VK2  H21  H21  H  0  1  N  N  N  24.137  18.095  14.592   8.926  -2.952  -1.755  H21  VK2  54  
VK2  H22  H22  H  0  1  N  N  N  22.878  17.186  19.383   5.292  -2.456   1.642  H22  VK2  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VK2  C6   C7   DOUB  Y  N   1  
VK2  C6   N1   SING  Y  N   2  
VK2  C7   N2   SING  Y  N   3  
VK2  N1   C5   DOUB  Y  N   4  
VK2  N2   C5   SING  Y  N   5  
VK2  N2   C8   SING  Y  N   6  
VK2  C5   C4   SING  Y  N   7  
VK2  C8   C2   DOUB  Y  N   8  
VK2  C4   C3   DOUB  Y  N   9  
VK2  C2   C3   SING  Y  N  10  
VK2  C2   C1   SING  N  N  11  
VK2  C    N    SING  N  N  12  
VK2  C1   N    SING  N  N  13  
VK2  N    C9   SING  N  N  14  
VK2  C9   O    SING  Y  N  15  
VK2  C9   N4   DOUB  Y  N  16  
VK2  O    C10  SING  Y  N  17  
VK2  N4   N3   SING  Y  N  18  
VK2  C10  N3   DOUB  Y  N  19  
VK2  C10  C11  SING  N  N  20  
VK2  C12  C11  DOUB  Y  N  21  
VK2  C12  C13  SING  Y  N  22  
VK2  C11  C16  SING  Y  N  23  
VK2  C13  C14  DOUB  Y  N  24  
VK2  C16  C17  SING  N  N  25  
VK2  C16  C15  DOUB  Y  N  26  
VK2  C14  C15  SING  Y  N  27  
VK2  C14  C18  SING  N  N  28  
VK2  C18  C22  DOUB  Y  N  29  
VK2  C18  C19  SING  Y  N  30  
VK2  N7   C23  TRIP  N  N  31  
VK2  C23  C22  SING  N  N  32  
VK2  C20  C19  SING  N  N  33  
VK2  C22  N6   SING  Y  N  34  
VK2  C19  N5   DOUB  Y  N  35  
VK2  N6   N5   SING  Y  N  36  
VK2  N6   C21  SING  N  N  37  
VK2  C1   H1   SING  N  N  38  
VK2  C1   H2   SING  N  N  39  
VK2  C3   H3   SING  N  N  40  
VK2  C7   H4   SING  N  N  41  
VK2  C8   H5   SING  N  N  42  
VK2  C12  H6   SING  N  N  43  
VK2  C13  H7   SING  N  N  44  
VK2  C15  H8   SING  N  N  45  
VK2  C20  H9   SING  N  N  46  
VK2  C20  H10  SING  N  N  47  
VK2  C20  H11  SING  N  N  48  
VK2  C21  H12  SING  N  N  49  
VK2  C21  H13  SING  N  N  50  
VK2  C21  H14  SING  N  N  51  
VK2  C17  H15  SING  N  N  52  
VK2  C17  H16  SING  N  N  53  
VK2  C17  H17  SING  N  N  54  
VK2  C    H18  SING  N  N  55  
VK2  C    H19  SING  N  N  56  
VK2  C    H20  SING  N  N  57  
VK2  C6   H21  SING  N  N  58  
VK2  C4   H22  SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VK2  InChI             InChI                 1.03   "InChI=1S/C24H22N8O/c1-15-11-18(22-16(2)29-31(4)20(22)12-25)6-7-19(15)23-27-28-24(33-23)30(3)13-17-5-8-21-26-9-10-32(21)14-17/h5-11,14H,13H2,1-4H3"  
VK2  InChIKey          InChI                 1.03   LOJVVUQLHLHRMD-UHFFFAOYSA-N  
VK2  SMILES_CANONICAL  CACTVS                3.385  "CN(Cc1ccc2nccn2c1)c3oc(nn3)c4ccc(cc4C)c5c(C)nn(C)c5C#N"  
VK2  SMILES            CACTVS                3.385  "CN(Cc1ccc2nccn2c1)c3oc(nn3)c4ccc(cc4C)c5c(C)nn(C)c5C#N"  
VK2  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1cc(ccc1c2nnc(o2)N(C)Cc3ccc4nccn4c3)c5c(nn(c5C#N)C)C"  
VK2  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1cc(ccc1c2nnc(o2)N(C)Cc3ccc4nccn4c3)c5c(nn(c5C#N)C)C"  
#
_pdbx_chem_comp_identifier.comp_id          VK2
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "4-[4-[5-[imidazo[1,2-a]pyridin-6-ylmethyl(methyl)amino]-1,3,4-oxadiazol-2-yl]-3-methyl-phenyl]-2,5-dimethyl-pyrazole-3-carbonitrile"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VK2  "Create component"  2021-05-20  PDBE  
VK2  "Initial release"   2021-09-15  RCSB  
##
