data_UF2
#

_chem_comp.id                                   UF2
_chem_comp.name                                 "1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)pyrimidine-2,4(1H,3H)-dione"
_chem_comp.type                                 "DNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C9 H12 F N2 O8 P"
_chem_comp.mon_nstd_parent_comp_id              DU
_chem_comp.pdbx_synonyms                        "2'-fluoro-2'-deoxyuridine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-11-04
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       326.172
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    UF2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3UFJ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UF2  P      P      P  0  1  N  N  N  -30.781  57.510   -9.715  -4.273   1.002  -0.011  P      UF2   1  
UF2  O1P    O1P    O  0  1  N  N  N  -32.117  57.873  -10.259  -4.070   1.663   1.298  O1P    UF2   2  
UF2  "O5'"  "O5'"  O  0  1  N  N  N  -29.671  58.277  -10.567  -2.913   0.266  -0.458  "O5'"  UF2   3  
UF2  "C5'"  "C5'"  C  0  1  N  N  N  -29.796  58.503  -11.988  -2.241  -0.692   0.361  "C5'"  UF2   4  
UF2  "C4'"  "C4'"  C  0  1  N  N  R  -29.023  59.743  -12.368  -0.989  -1.192  -0.361  "C4'"  UF2   5  
UF2  "C3'"  "C3'"  C  0  1  N  N  R  -27.539  59.688  -12.004  -0.314  -2.321   0.450  "C3'"  UF2   6  
UF2  "O3'"  "O3'"  O  0  1  N  N  N  -26.758  59.516  -13.198  -0.683  -3.600  -0.069  "O3'"  UF2   7  
UF2  "C2'"  "C2'"  C  0  1  N  N  S  -27.245  61.009  -11.303   1.198  -2.072   0.254  "C2'"  UF2   8  
UF2  "F2'"  "F2'"  F  0  1  N  N  N  -26.803  60.785  -10.033   1.817  -1.817   1.482  "F2'"  UF2   9  
UF2  "C1'"  "C1'"  C  0  1  N  N  R  -28.567  61.752  -11.218   1.258  -0.823  -0.653  "C1'"  UF2  10  
UF2  "O4'"  "O4'"  O  0  1  N  N  N  -29.578  60.854  -11.643   0.003  -0.145  -0.431  "O4'"  UF2  11  
UF2  N1     N1     N  0  1  N  N  N  -28.948  62.252   -9.887   2.379   0.036  -0.263  N1     UF2  12  
UF2  C6     C6     C  0  1  N  N  N  -29.825  61.542   -9.099   2.378   0.633   0.968  C6     UF2  13  
UF2  C5     C5     C  0  1  N  N  N  -30.239  61.976   -7.905   3.411   1.426   1.327  C5     UF2  14  
UF2  C4     C4     C  0  1  N  N  N  -29.771  63.234   -7.407   4.478   1.622   0.417  C4     UF2  15  
UF2  N3     N3     N  0  1  N  N  N  -28.891  63.893   -8.241   4.440   1.016  -0.787  N3     UF2  16  
UF2  C2     C2     C  0  1  N  N  N  -28.454  63.477   -9.475   3.401   0.227  -1.117  C2     UF2  17  
UF2  O2     O2     O  0  1  N  N  N  -27.690  64.144  -10.150   3.384  -0.318  -2.204  O2     UF2  18  
UF2  O4     O4     O  0  1  N  N  N  -30.079  63.743   -6.328   5.420   2.332   0.718  O4     UF2  19  
UF2  O2P    O2P    O  0  1  N  N  N  -30.525  57.659   -8.260  -5.455  -0.084   0.115  O2P    UF2  20  
UF2  O1     O1     O  0  1  N  Y  N  -30.414  55.982  -10.011  -4.674   2.106  -1.113  O1     UF2  21  
UF2  H1     H1     H  0  1  N  N  N  -30.857  58.638  -12.246  -1.956  -0.228   1.305  H1     UF2  22  
UF2  H2     H2     H  0  1  N  N  N  -29.393  57.637  -12.534  -2.907  -1.533   0.557  H2     UF2  23  
UF2  H3     H3     H  0  1  N  N  N  -29.103  59.836  -13.461  -1.243  -1.544  -1.361  H3     UF2  24  
UF2  H4     H4     H  0  1  N  N  N  -27.286  58.843  -11.347  -0.580  -2.244   1.505  H4     UF2  25  
UF2  H5     H5     H  0  1  N  N  N  -25.836  59.482  -12.972  -0.288  -4.345   0.404  H5     UF2  26  
UF2  H6     H6     H  0  1  N  N  N  -26.476  61.573  -11.852   1.664  -2.925  -0.240  H6     UF2  27  
UF2  H7     H7     H  0  1  N  N  N  -28.451  62.648  -11.846   1.352  -1.117  -1.699  H7     UF2  28  
UF2  H8     H8     H  0  1  N  N  N  -30.194  60.594   -9.461   1.556   0.472   1.649  H8     UF2  29  
UF2  H9     H9     H  0  1  N  N  N  -30.923  61.381   -7.319   3.423   1.903   2.296  H9     UF2  30  
UF2  H10    H10    H  0  1  N  N  N  -28.533  64.767   -7.912   5.167   1.145  -1.416  H10    UF2  31  
UF2  H11    H11    H  0  1  N  N  N  -31.306  57.992   -7.833  -5.643  -0.557  -0.707  H11    UF2  32  
UF2  H12    H12    H  0  1  N  N  N  -31.125  55.572  -10.489  -5.486   2.590  -0.908  H12    UF2  33  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UF2  "O3'"  "C3'"  SING  N  N   1  
UF2  "C4'"  "C3'"  SING  N  N   2  
UF2  "C4'"  "C5'"  SING  N  N   3  
UF2  "C4'"  "O4'"  SING  N  N   4  
UF2  "C3'"  "C2'"  SING  N  N   5  
UF2  "C5'"  "O5'"  SING  N  N   6  
UF2  "O4'"  "C1'"  SING  N  N   7  
UF2  "C2'"  "C1'"  SING  N  N   8  
UF2  "C2'"  "F2'"  SING  N  N   9  
UF2  "C1'"  N1     SING  N  N  10  
UF2  "O5'"  P      SING  N  N  11  
UF2  O1P    P      DOUB  N  N  12  
UF2  O2     C2     DOUB  N  N  13  
UF2  N1     C2     SING  N  N  14  
UF2  N1     C6     SING  N  N  15  
UF2  P      O2P    SING  N  N  16  
UF2  C2     N3     SING  N  N  17  
UF2  C6     C5     DOUB  N  N  18  
UF2  N3     C4     SING  N  N  19  
UF2  C5     C4     SING  N  N  20  
UF2  C4     O4     DOUB  N  N  21  
UF2  P      O1     SING  N  N  22  
UF2  "C5'"  H1     SING  N  N  23  
UF2  "C5'"  H2     SING  N  N  24  
UF2  "C4'"  H3     SING  N  N  25  
UF2  "C3'"  H4     SING  N  N  26  
UF2  "O3'"  H5     SING  N  N  27  
UF2  "C2'"  H6     SING  N  N  28  
UF2  "C1'"  H7     SING  N  N  29  
UF2  C6     H8     SING  N  N  30  
UF2  C5     H9     SING  N  N  31  
UF2  N3     H10    SING  N  N  32  
UF2  O2P    H11    SING  N  N  33  
UF2  O1     H12    SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UF2  SMILES            ACDLabs               12.01  "O=P(O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(F)C2O"  
UF2  InChI             InChI                 1.03   "InChI=1S/C9H12FN2O8P/c10-6-7(14)4(3-19-21(16,17)18)20-8(6)12-2-1-5(13)11-9(12)15/h1-2,4,6-8,14H,3H2,(H,11,13,15)(H2,16,17,18)/t4-,6+,7-,8-/m1/s1"  
UF2  InChIKey          InChI                 1.03   RTGGYPQTXNSBPD-PXBUCIJWSA-N  
UF2  SMILES_CANONICAL  CACTVS                3.370  "O[C@H]1[C@H](F)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O"  
UF2  SMILES            CACTVS                3.370  "O[CH]1[CH](F)[CH](O[CH]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O"  
UF2  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "C1=CN(C(=O)NC1=O)[C@H]2[C@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)F"  
UF2  SMILES            "OpenEye OEToolkits"  1.7.2  "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UF2  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)pyrimidine-2,4(1H,3H)-dione"  
UF2  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  "[(2R,3R,4S,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UF2  "Create component"       2011-11-04  RCSB  
UF2  "Modify parent residue"  2011-11-04  RCSB  
UF2  "Modify synonyms"        2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     UF2
_pdbx_chem_comp_synonyms.name        "2'-fluoro-2'-deoxyuridine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
