data_PG2
#

_chem_comp.id                                   PG2
_chem_comp.name                                 "PROSTAGLANDIN D2"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H32 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(5E,13E)-9,15-DIHYDROXY-11-OXOPROSTA-5,13-DIEN-1-OIC ACID"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-01-06
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       352.465
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PG2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1RY0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PG2  C1    C1    C  0  1  N  N  N  -0.200  -16.102   7.104  -6.011   3.309  -0.502  C1    PG2   1  
PG2  C2    C2    C  0  1  N  N  N   0.518  -16.924   8.108  -4.689   2.712  -0.093  C2    PG2   2  
PG2  C3    C3    C  0  1  N  N  N  -0.173  -17.159   9.441  -4.917   1.313   0.484  C3    PG2   3  
PG2  C4    C4    C  0  1  N  N  N  -0.926  -18.482   9.523  -3.575   0.708   0.899  C4    PG2   4  
PG2  C5    C5    C  0  1  N  N  N  -1.284  -18.745  10.959  -3.799  -0.670   1.467  C5    PG2   5  
PG2  C6    C6    C  0  1  N  N  N  -2.024  -19.780  11.429  -3.140  -1.693   0.983  C6    PG2   6  
PG2  C7    C7    C  0  1  N  N  N  -2.680  -20.894  10.829  -2.038  -1.474  -0.021  C7    PG2   7  
PG2  C8    C8    C  0  1  N  N  R  -4.003  -20.616  10.126  -0.768  -2.182   0.454  C8    PG2   8  
PG2  C9    C9    C  0  1  N  N  S  -4.545  -21.727   9.274  -0.959  -3.713   0.398  C9    PG2   9  
PG2  C10   C10   C  0  1  N  N  N  -5.833  -22.169   9.766   0.420  -4.239  -0.073  C10   PG2  10  
PG2  C11   C11   C  0  1  N  N  N  -6.440  -20.909  10.280   0.858  -3.187  -1.088  C11   PG2  11  
PG2  C12   C12   C  0  1  N  N  R  -5.235  -20.231  11.059   0.402  -1.865  -0.495  C12   PG2  12  
PG2  C13   C13   C  0  1  N  N  N  -5.384  -18.796  11.263   1.531  -1.228   0.273  C13   PG2  13  
PG2  C14   C14   C  0  1  N  N  N  -5.445  -18.109  12.360   1.951  -0.030  -0.052  C14   PG2  14  
PG2  C15   C15   C  0  1  N  N  S  -5.590  -16.650  12.418   3.080   0.607   0.716  C15   PG2  15  
PG2  C16   C16   C  0  1  N  N  N  -6.198  -16.117  13.776   4.190   1.017  -0.254  C16   PG2  16  
PG2  C17   C17   C  0  1  N  N  N  -5.224  -16.086  14.917   5.279   1.775   0.508  C17   PG2  17  
PG2  C18   C18   C  0  1  N  N  N  -5.837  -15.179  16.075   6.389   2.184  -0.462  C18   PG2  18  
PG2  C19   C19   C  0  1  N  N  N  -5.624  -15.668  17.399   7.478   2.942   0.299  C19   PG2  19  
PG2  C20   C20   C  0  1  N  N  N  -4.517  -14.832  18.171   8.588   3.352  -0.671  C20   PG2  20  
PG2  O1    O1    O  0  1  N  N  N  -0.228  -14.915   7.245  -6.055   4.539  -1.038  O1    PG2  21  
PG2  O2    O2    O  0  1  N  N  N  -0.895  -16.752   6.287  -7.031   2.680  -0.348  O2    PG2  22  
PG2  O3    O3    O  0  1  N  N  N  -3.688  -22.824   9.057  -1.979  -4.058  -0.541  O3    PG2  23  
PG2  O4    O4    O  0  1  N  N  N  -7.576  -20.489  10.163   1.439  -3.366  -2.131  O4    PG2  24  
PG2  O5    O5    O  0  1  N  N  N  -6.472  -16.214  11.362   3.597  -0.328   1.665  O5    PG2  25  
PG2  H21   1H2   H  0  1  N  N  N   1.529  -16.489   8.287  -4.223   3.345   0.662  H21   PG2  26  
PG2  H22   2H2   H  0  1  N  N  N   0.791  -17.906   7.655  -4.036   2.644  -0.963  H22   PG2  27  
PG2  H31   1H3   H  0  1  N  N  N  -0.849  -16.307   9.687  -5.383   0.681  -0.272  H31   PG2  28  
PG2  H32   2H3   H  0  1  N  N  N   0.555  -17.070  10.281  -5.570   1.381   1.354  H32   PG2  29  
PG2  H41   1H4   H  0  1  N  N  N  -0.359  -19.325   9.064  -3.108   1.341   1.654  H41   PG2  30  
PG2  H42   2H4   H  0  1  N  N  N  -1.815  -18.509   8.850  -2.922   0.640   0.029  H42   PG2  31  
PG2  H5    H5    H  0  1  N  N  N  -0.958  -18.087  11.782  -4.504  -0.813   2.273  H5    PG2  32  
PG2  H6    H6    H  0  1  N  N  N  -2.110  -19.699  12.526  -3.387  -2.695   1.303  H6    PG2  33  
PG2  H71   1H7   H  0  1  N  N  N  -2.823  -21.697  11.590  -1.843  -0.406  -0.118  H71   PG2  34  
PG2  H72   2H7   H  0  1  N  N  N  -1.982  -21.402  10.123  -2.340  -1.878  -0.987  H72   PG2  35  
PG2  H8    H8    H  0  1  N  N  N  -3.663  -19.748   9.514  -0.522  -1.871   1.469  H8    PG2  36  
PG2  H9    H9    H  0  1  N  N  N  -4.652  -21.266   8.264  -1.201  -4.105   1.386  H9    PG2  37  
PG2  H101  1H10  H  0  0  N  N  N  -5.789  -23.002  10.506   1.120  -4.286   0.761  H101  PG2  38  
PG2  H102  2H10  H  0  0  N  N  N  -6.455  -22.716   9.020   0.319  -5.214  -0.549  H102  PG2  39  
PG2  H12   H12   H  0  1  N  N  N  -5.136  -20.586  12.111   0.067  -1.197  -1.289  H12   PG2  40  
PG2  H13   H13   H  0  1  N  N  N  -5.467  -18.090  10.420   1.993  -1.758   1.092  H13   PG2  41  
PG2  H14   H14   H  0  1  N  N  N  -5.374  -18.765  13.244   1.488   0.500  -0.872  H14   PG2  42  
PG2  H15   H15   H  0  1  N  N  N  -4.557  -16.241  12.317   2.710   1.489   1.239  H15   PG2  43  
PG2  H161  1H16  H  0  0  N  N  N  -7.105  -16.703  14.054   3.775   1.660  -1.030  H161  PG2  44  
PG2  H162  2H16  H  0  0  N  N  N  -6.658  -15.112  13.629   4.619   0.126  -0.712  H162  PG2  45  
PG2  H171  1H17  H  0  0  N  N  N  -4.207  -15.753  14.604   5.694   1.132   1.284  H171  PG2  46  
PG2  H172  2H17  H  0  0  N  N  N  -4.947  -17.106  15.272   4.849   2.666   0.966  H172  PG2  47  
PG2  H181  1H18  H  0  0  N  N  N  -6.925  -15.010  15.897   5.974   2.828  -1.238  H181  PG2  48  
PG2  H182  2H18  H  0  0  N  N  N  -5.461  -14.133  15.985   6.818   1.293  -0.920  H182  PG2  49  
PG2  H191  1H19  H  0  0  N  N  N  -5.379  -16.756  17.394   7.893   2.299   1.076  H191  PG2  50  
PG2  H192  2H19  H  0  0  N  N  N  -6.578  -15.705  17.975   7.048   3.833   0.757  H192  PG2  51  
PG2  H201  1H20  H  0  0  N  N  N  -4.762  -13.744  18.176   9.364   3.892  -0.128  H201  PG2  52  
PG2  H202  2H20  H  0  0  N  N  N  -4.351  -15.214  19.205   9.017   2.461  -1.128  H202  PG2  53  
PG2  H203  3H20  H  0  0  N  N  N  -3.563  -14.795  17.595   8.173   3.995  -1.447  H203  PG2  54  
PG2  HO1   HO1   H  0  1  N  N  N  -0.688  -14.388   6.602  -6.903   4.921  -1.300  HO1   PG2  55  
PG2  HO3   HO3   H  0  1  N  N  N  -4.031  -23.527   8.518  -2.053  -5.022  -0.532  HO3   PG2  56  
PG2  HO5   HO5   H  0  1  N  N  N  -6.566  -15.269  11.400   3.913  -1.091   1.162  HO5   PG2  57  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PG2  C1   C2    SING  N  N   1  
PG2  C1   O1    SING  N  N   2  
PG2  C1   O2    DOUB  N  N   3  
PG2  C2   C3    SING  N  N   4  
PG2  C2   H21   SING  N  N   5  
PG2  C2   H22   SING  N  N   6  
PG2  C3   C4    SING  N  N   7  
PG2  C3   H31   SING  N  N   8  
PG2  C3   H32   SING  N  N   9  
PG2  C4   C5    SING  N  N  10  
PG2  C4   H41   SING  N  N  11  
PG2  C4   H42   SING  N  N  12  
PG2  C5   C6    DOUB  N  Z  13  
PG2  C5   H5    SING  N  N  14  
PG2  C6   C7    SING  N  N  15  
PG2  C6   H6    SING  N  N  16  
PG2  C7   C8    SING  N  N  17  
PG2  C7   H71   SING  N  N  18  
PG2  C7   H72   SING  N  N  19  
PG2  C8   C9    SING  N  N  20  
PG2  C8   C12   SING  N  N  21  
PG2  C8   H8    SING  N  N  22  
PG2  C9   C10   SING  N  N  23  
PG2  C9   O3    SING  N  N  24  
PG2  C9   H9    SING  N  N  25  
PG2  C10  C11   SING  N  N  26  
PG2  C10  H101  SING  N  N  27  
PG2  C10  H102  SING  N  N  28  
PG2  C11  C12   SING  N  N  29  
PG2  C11  O4    DOUB  N  N  30  
PG2  C12  C13   SING  N  N  31  
PG2  C12  H12   SING  N  N  32  
PG2  C13  C14   DOUB  N  E  33  
PG2  C13  H13   SING  N  N  34  
PG2  C14  C15   SING  N  N  35  
PG2  C14  H14   SING  N  N  36  
PG2  C15  C16   SING  N  N  37  
PG2  C15  O5    SING  N  N  38  
PG2  C15  H15   SING  N  N  39  
PG2  C16  C17   SING  N  N  40  
PG2  C16  H161  SING  N  N  41  
PG2  C16  H162  SING  N  N  42  
PG2  C17  C18   SING  N  N  43  
PG2  C17  H171  SING  N  N  44  
PG2  C17  H172  SING  N  N  45  
PG2  C18  C19   SING  N  N  46  
PG2  C18  H181  SING  N  N  47  
PG2  C18  H182  SING  N  N  48  
PG2  C19  C20   SING  N  N  49  
PG2  C19  H191  SING  N  N  50  
PG2  C19  H192  SING  N  N  51  
PG2  C20  H201  SING  N  N  52  
PG2  C20  H202  SING  N  N  53  
PG2  C20  H203  SING  N  N  54  
PG2  O1   HO1   SING  N  N  55  
PG2  O3   HO3   SING  N  N  56  
PG2  O5   HO5   SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PG2  SMILES            ACDLabs               10.04  "O=C1CC(O)C(C\C=C/CCCC(=O)O)C1/C=C/C(O)CCCCC"  
PG2  SMILES_CANONICAL  CACTVS                3.341  "CCCCC[C@H](O)/C=C/[C@@H]1[C@@H](C\C=C/CCCC(O)=O)[C@@H](O)CC1=O"  
PG2  SMILES            CACTVS                3.341  "CCCCC[CH](O)C=C[CH]1[CH](CC=CCCCC(O)=O)[CH](O)CC1=O"  
PG2  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CCCCC[C@@H](\C=C\[C@@H]1[C@H]([C@H](CC1=O)O)C\C=C/CCCC(=O)O)O"  
PG2  SMILES            "OpenEye OEToolkits"  1.5.0  "CCCCCC(C=CC1C(C(CC1=O)O)CC=CCCCC(=O)O)O"  
PG2  InChI             InChI                 1.03   "InChI=1S/C20H32O5/c1-2-3-6-9-15(21)12-13-17-16(18(22)14-19(17)23)10-7-4-5-8-11-20(24)25/h4,7,12-13,15-18,21-22H,2-3,5-6,8-11,14H2,1H3,(H,24,25)/b7-4-,13-12+/t15-,16+,17+,18-/m0/s1"  
PG2  InChIKey          InChI                 1.03   BHMBVRSPMRCCGG-OUTUXVNYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PG2  "SYSTEMATIC NAME"  ACDLabs               10.04  "(5Z,9alpha,13E,15S)-9,15-dihydroxy-11-oxoprosta-5,13-dien-1-oic acid"  
PG2  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(Z)-7-[(1R,2R,5S)-5-hydroxy-2-[(E,3S)-3-hydroxyoct-1-enyl]-3-oxo-cyclopentyl]hept-5-enoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PG2  "Create component"   2004-01-06  RCSB  
PG2  "Modify descriptor"  2011-06-04  RCSB  
PG2  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PG2
_pdbx_chem_comp_synonyms.name        "(5E,13E)-9,15-DIHYDROXY-11-OXOPROSTA-5,13-DIEN-1-OIC ACID"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
