data_N62
#

_chem_comp.id                                   N62
_chem_comp.name                                 "~{N}-[[(2~{S},3~{S},4~{R},5~{S},6~{R})-4-[[5,6-bis(fluoranyl)-2-oxidanylidene-chromen-3-yl]methoxy]-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]methyl]-4-fluoranyl-naphthalene-1-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H24 F3 N O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-11-13
_chem_comp.pdbx_modified_date                   2020-11-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       559.487
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    N62
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6TF6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N62  F3   F1   F  0  1  N  N  N  -21.456  14.836   4.070   -9.701   1.173   0.315  F3   N62   1  
N62  C11  C1   C  0  1  Y  N  N  -21.090  14.052   3.082   -8.453   0.655   0.313  C11  N62   2  
N62  C13  C2   C  0  1  Y  N  N  -22.010  13.853   2.075   -7.369   1.487   0.461  C13  N62   3  
N62  C10  C3   C  0  1  Y  N  N  -19.816  13.519   3.027   -8.273  -0.733   0.166  C10  N62   4  
N62  C19  C4   C  0  1  Y  N  N  -18.898  13.717   4.077   -9.368  -1.600   0.019  C19  N62   5  
N62  C20  C5   C  0  1  Y  N  N  -17.624  13.145   4.004   -9.155  -2.938  -0.121  C20  N62   6  
N62  C21  C6   C  0  1  Y  N  N  -17.253  12.363   2.909   -7.865  -3.462  -0.122  C21  N62   7  
N62  C22  C7   C  0  1  Y  N  N  -18.176  12.155   1.868   -6.779  -2.649   0.019  C22  N62   8  
N62  C12  C8   C  0  1  Y  N  N  -19.456  12.719   1.904   -6.962  -1.269   0.165  C12  N62   9  
N62  C16  C9   C  0  1  Y  N  N  -20.410  12.522   0.890   -5.827  -0.361   0.318  C16  N62  10  
N62  C1   C10  C  0  1  Y  N  N  -21.661  13.073   0.964   -6.071   0.999   0.464  C1   N62  11  
N62  C27  C11  C  0  1  N  N  N  -20.179  11.758  -0.362   -4.448  -0.879   0.322  C27  N62  12  
N62  O8   O1   O  0  1  N  N  N  -19.282  12.206  -1.093   -4.249  -2.079   0.299  O8   N62  13  
N62  N1   N1   N  0  1  N  N  N  -20.983  10.737  -0.704   -3.407  -0.024   0.350  N1   N62  14  
N62  C28  C12  C  0  1  N  N  N  -20.836  10.052  -1.977   -2.035  -0.539   0.354  C28  N62  15  
N62  C7   C13  C  0  1  N  N  S  -19.817   8.930  -1.916   -1.051   0.631   0.388  C7   N62  16  
N62  C8   C14  C  0  1  N  N  S  -18.371   9.301  -1.645    0.382   0.093   0.392  C8   N62  17  
N62  O3   O2   O  0  1  N  N  N  -17.911  10.276  -2.572    0.598  -0.683   1.572  O3   N62  18  
N62  O2   O3   O  0  1  N  N  N  -20.259   7.938  -0.985   -1.247   1.453  -0.765  O2   N62  19  
N62  C15  C15  C  0  1  N  N  R  -19.532   6.687  -1.133   -0.390   2.595  -0.819  C15  N62  20  
N62  C18  C16  C  0  1  N  N  N  -20.131   5.694  -0.192   -0.707   3.411  -2.074  C18  N62  21  
N62  O6   O4   O  0  1  N  N  N  -21.503   5.485  -0.604   -2.033   3.936  -1.979  O6   N62  22  
N62  C9   C17  C  0  1  N  N  S  -18.036   6.939  -0.890    1.069   2.136  -0.864  C9   N62  23  
N62  O5   O5   O  0  1  N  N  N  -17.865   7.256   0.510    1.293   1.372  -2.050  O5   N62  24  
N62  C3   C18  C  0  1  N  N  R  -17.525   8.041  -1.787    1.362   1.270   0.366  C3   N62  25  
N62  O1   O6   O  0  1  N  N  N  -16.257   8.471  -1.394    2.701   0.777   0.295  O1   N62  26  
N62  C2   C19  C  0  1  N  N  N  -15.208   7.868  -2.070    3.667   1.626   0.917  C2   N62  27  
N62  C4   C20  C  0  1  N  N  N  -13.844   8.276  -1.509    5.037   1.011   0.784  C4   N62  28  
N62  C6   C21  C  0  1  N  N  N  -13.536   8.368  -0.150    5.190  -0.176   0.144  C6   N62  29  
N62  C17  C22  C  0  1  Y  N  N  -12.262   8.732   0.203    6.540  -0.736   0.038  C17  N62  30  
N62  C26  C23  C  0  1  Y  N  N  -11.900   8.840   1.521    6.767  -1.957  -0.609  C26  N62  31  
N62  F2   F2   F  0  1  N  N  N  -12.761   8.546   2.433    5.735  -2.641  -1.150  F2   N62  32  
N62  C25  C24  C  0  1  Y  N  N  -10.632   9.152   1.893    8.052  -2.456  -0.691  C25  N62  33  
N62  F1   F3   F  0  1  N  N  N  -10.297   9.216   3.178    8.279  -3.634  -1.314  F1   N62  34  
N62  C24  C25  C  0  1  Y  N  N   -9.702   9.492   0.961    9.113  -1.753  -0.135  C24  N62  35  
N62  C23  C26  C  0  1  Y  N  N  -10.017   9.402  -0.351    8.901  -0.549   0.505  C23  N62  36  
N62  C14  C27  C  0  1  Y  N  N  -11.298   9.044  -0.745    7.618  -0.028   0.599  C14  N62  37  
N62  O4   O7   O  0  1  N  N  N  -11.572   9.015  -2.077    7.397   1.150   1.222  O4   N62  38  
N62  C5   C28  C  0  1  N  N  N  -12.815   8.616  -2.474    6.164   1.671   1.318  C5   N62  39  
N62  O7   O8   O  0  1  N  N  N  -13.092   8.562  -3.661    6.012   2.736   1.889  O7   N62  40  
N62  H1   H1   H  0  1  N  N  N  -22.993  14.295   2.142   -7.532   2.549   0.577  H1   N62  41  
N62  H2   H2   H  0  1  N  N  N  -19.177  14.309   4.936  -10.375  -1.208   0.018  H2   N62  42  
N62  H3   H3   H  0  1  N  N  N  -16.918  13.310   4.805   -9.999  -3.602  -0.234  H3   N62  43  
N62  H4   H4   H  0  1  N  N  N  -16.268  11.922   2.861   -7.722  -4.526  -0.234  H4   N62  44  
N62  H5   H5   H  0  1  N  N  N  -17.890  11.547   1.023   -5.784  -3.067   0.017  H5   N62  45  
N62  H6   H6   H  0  1  N  N  N  -22.375  12.908   0.171   -5.243   1.682   0.578  H6   N62  46  
N62  H7   H7   H  0  1  N  N  N  -21.697  10.443  -0.069   -3.565   0.933   0.368  H7   N62  47  
N62  H8   H8   H  0  1  N  N  N  -20.514  10.781  -2.735   -1.885  -1.166   1.232  H8   N62  48  
N62  H9   H9   H  0  1  N  N  N  -21.810   9.629  -2.265   -1.867  -1.130  -0.547  H9   N62  49  
N62  H10  H10  H  0  1  N  N  N  -19.826   8.461  -2.911   -1.219   1.222   1.288  H10  N62  50  
N62  H11  H11  H  0  1  N  N  N  -18.283   9.678  -0.615    0.539  -0.531  -0.488  H11  N62  51  
N62  H12  H12  H  0  1  N  N  N  -18.240  11.131  -2.322    0.008  -1.444   1.656  H12  N62  52  
N62  H13  H13  H  0  1  N  N  N  -19.655   6.317  -2.161   -0.550   3.212   0.065  H13  N62  53  
N62  H14  H14  H  0  1  N  N  N  -19.575   4.746  -0.240    0.004   4.233  -2.162  H14  N62  54  
N62  H15  H15  H  0  1  N  N  N  -20.102   6.084   0.836   -0.632   2.770  -2.953  H15  N62  55  
N62  H16  H16  H  0  1  N  N  N  -21.916   4.856  -0.024   -2.302   4.466  -2.742  H16  N62  56  
N62  H17  H17  H  0  1  N  N  N  -17.489   6.014  -1.125    1.725   3.007  -0.862  H17  N62  57  
N62  H18  H18  H  0  1  N  N  N  -18.197   6.541   1.040    1.122   1.857  -2.869  H18  N62  58  
N62  H19  H19  H  0  1  N  N  N  -17.533   7.705  -2.834    1.240   1.866   1.270  H19  N62  59  
N62  H20  H20  H  0  1  N  N  N  -15.256   8.159  -3.130    3.658   2.602   0.433  H20  N62  60  
N62  H21  H21  H  0  1  N  N  N  -15.313   6.776  -1.985    3.422   1.742   1.973  H21  N62  61  
N62  H22  H22  H  0  1  N  N  N  -14.281   8.158   0.603    4.341  -0.695  -0.276  H22  N62  62  
N62  H23  H23  H  0  1  N  N  N   -8.723   9.830   1.265   10.113  -2.153  -0.204  H23  N62  63  
N62  H24  H24  H  0  1  N  N  N   -9.265   9.610  -1.098    9.734  -0.012   0.933  H24  N62  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N62  O7   C5   DOUB  N  N   1  
N62  O3   C8   SING  N  N   2  
N62  C5   O4   SING  N  N   3  
N62  C5   C4   SING  N  N   4  
N62  O4   C14  SING  N  N   5  
N62  C2   C4   SING  N  N   6  
N62  C2   O1   SING  N  N   7  
N62  C28  C7   SING  N  N   8  
N62  C28  N1   SING  N  N   9  
N62  C7   C8   SING  N  N  10  
N62  C7   O2   SING  N  N  11  
N62  C3   C8   SING  N  N  12  
N62  C3   O1   SING  N  N  13  
N62  C3   C9   SING  N  N  14  
N62  C4   C6   DOUB  N  N  15  
N62  C15  O2   SING  N  N  16  
N62  C15  C9   SING  N  N  17  
N62  C15  C18  SING  N  N  18  
N62  O8   C27  DOUB  N  N  19  
N62  C9   O5   SING  N  N  20  
N62  C14  C23  DOUB  Y  N  21  
N62  C14  C17  SING  Y  N  22  
N62  N1   C27  SING  N  N  23  
N62  O6   C18  SING  N  N  24  
N62  C27  C16  SING  N  N  25  
N62  C23  C24  SING  Y  N  26  
N62  C6   C17  SING  N  N  27  
N62  C17  C26  DOUB  Y  N  28  
N62  C16  C1   DOUB  Y  N  29  
N62  C16  C12  SING  Y  N  30  
N62  C24  C25  DOUB  Y  N  31  
N62  C1   C13  SING  Y  N  32  
N62  C26  C25  SING  Y  N  33  
N62  C26  F2   SING  N  N  34  
N62  C22  C12  DOUB  Y  N  35  
N62  C22  C21  SING  Y  N  36  
N62  C25  F1   SING  N  N  37  
N62  C12  C10  SING  Y  N  38  
N62  C13  C11  DOUB  Y  N  39  
N62  C21  C20  DOUB  Y  N  40  
N62  C10  C11  SING  Y  N  41  
N62  C10  C19  DOUB  Y  N  42  
N62  C11  F3   SING  N  N  43  
N62  C20  C19  SING  Y  N  44  
N62  C13  H1   SING  N  N  45  
N62  C19  H2   SING  N  N  46  
N62  C20  H3   SING  N  N  47  
N62  C21  H4   SING  N  N  48  
N62  C22  H5   SING  N  N  49  
N62  C1   H6   SING  N  N  50  
N62  N1   H7   SING  N  N  51  
N62  C28  H8   SING  N  N  52  
N62  C28  H9   SING  N  N  53  
N62  C7   H10  SING  N  N  54  
N62  C8   H11  SING  N  N  55  
N62  O3   H12  SING  N  N  56  
N62  C15  H13  SING  N  N  57  
N62  C18  H14  SING  N  N  58  
N62  C18  H15  SING  N  N  59  
N62  O6   H16  SING  N  N  60  
N62  C9   H17  SING  N  N  61  
N62  O5   H18  SING  N  N  62  
N62  C3   H19  SING  N  N  63  
N62  C2   H20  SING  N  N  64  
N62  C2   H21  SING  N  N  65  
N62  C6   H22  SING  N  N  66  
N62  C24  H23  SING  N  N  67  
N62  C23  H24  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N62  InChI             InChI                 1.03   "InChI=1S/C28H24F3NO8/c29-18-6-5-16(14-3-1-2-4-15(14)18)27(36)32-10-21-24(34)26(25(35)22(11-33)39-21)38-12-13-9-17-20(40-28(13)37)8-7-19(30)23(17)31/h1-9,21-22,24-26,33-35H,10-12H2,(H,32,36)/t21-,22+,24-,25-,26+/m0/s1"  
N62  InChIKey          InChI                 1.03   MUJDRCJRZOWOHC-ZEZYLZLISA-N  
N62  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@@H](CNC(=O)c2ccc(F)c3ccccc23)[C@H](O)[C@@H](OCC4=Cc5c(F)c(F)ccc5OC4=O)[C@H]1O"  
N62  SMILES            CACTVS                3.385  "OC[CH]1O[CH](CNC(=O)c2ccc(F)c3ccccc23)[CH](O)[CH](OCC4=Cc5c(F)c(F)ccc5OC4=O)[CH]1O"  
N62  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)c(ccc2F)C(=O)NC[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)OCC4=Cc5c(ccc(c5F)F)OC4=O)O"  
N62  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)c(ccc2F)C(=O)NCC3C(C(C(C(O3)CO)O)OCC4=Cc5c(ccc(c5F)F)OC4=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          N62
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-[[(2~{S},3~{S},4~{R},5~{S},6~{R})-4-[[5,6-bis(fluoranyl)-2-oxidanylidene-chromen-3-yl]methoxy]-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]methyl]-4-fluoranyl-naphthalene-1-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N62  "Create component"  2019-11-13  PDBE  
N62  "Initial release"   2020-11-18  RCSB  
##
