data_HY2
# 
_chem_comp.id                                    HY2 
_chem_comp.name                                  "2-{2-[4-(3-{[(11aS)-7-methoxy-5-oxo-2,3,5,10,11,11a-hexahydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-8-yl]oxy}propyl)piperazin-1-yl]ethyl}-1H-benzo[de]isoquinoline-1,3(2H)-dione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H39 N5 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-05-19 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        597.704 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     HY2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2KY7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HY2 C1   C1   C 0 1 N N N 28.223 22.129 58.636 10.056  1.960  2.357  C1   HY2 1  
HY2 O2   O2   O 0 1 N N N 33.577 24.583 53.188 5.457   -3.264 0.129  O2   HY2 2  
HY2 C3   C3   C 0 1 N N N 28.176 24.488 58.291 11.321  1.071  0.512  C3   HY2 3  
HY2 N4   N4   N 0 1 N N N 29.052 23.909 57.263 9.980   0.511  0.419  N4   HY2 4  
HY2 O5   O5   O 0 1 N N N 30.467 25.615 57.130 10.239  -1.229 -0.997 O5   HY2 5  
HY2 C7   C7   C 0 1 Y N N 32.374 24.082 53.669 6.067   -2.071 -0.108 C7   HY2 6  
HY2 C9   C9   C 0 1 Y N N 30.520 22.574 53.379 5.897   0.292  -0.627 C9   HY2 7  
HY2 N10  N10  N 0 1 N N N 28.709 22.461 54.844 7.906   1.621  -0.607 N10  HY2 8  
HY2 C11  C11  C 0 1 N N N 28.250 21.890 56.116 8.338   2.349  0.619  C11  HY2 9  
HY2 C12  C12  C 0 1 N N N 34.234 25.745 53.741 6.301   -4.373 0.444  C12  HY2 10 
HY2 C13  C13  C 0 1 N N N 32.204 21.270 51.359 3.225   0.124  -0.853 C13  HY2 11 
HY2 O13  O13  O 0 1 N N N 32.301 22.662 51.737 3.956   -1.061 -0.530 O13  HY2 12 
HY2 C14  C14  C 0 1 N N N 33.034 21.021 50.093 1.732   -0.202 -0.930 C14  HY2 13 
HY2 C15  C15  C 0 1 N N N 32.486 21.860 48.924 0.951   1.066  -1.276 C15  HY2 14 
HY2 N16  N16  N 0 1 N N N 32.999 21.351 47.599 -0.483  0.753  -1.349 N16  HY2 15 
HY2 C17  C17  C 0 1 N N N 32.722 22.417 46.576 -1.240  1.882  -1.908 C17  HY2 16 
HY2 C18  C18  C 0 1 N N N 33.109 21.957 45.162 -2.713  1.488  -2.042 C18  HY2 17 
HY2 N19  N19  N 0 1 N N N 32.441 20.675 44.820 -3.237  1.107  -0.723 N19  HY2 18 
HY2 C1A  C1A  C 0 1 N N S 28.989 22.449 57.335 9.099   1.184  1.416  C1A  HY2 19 
HY2 C20  C20  C 0 1 N N N 32.750 19.618 45.811 -2.480  -0.022 -0.164 C20  HY2 20 
HY2 C21  C21  C 0 1 N N N 32.295 20.069 47.209 -1.007  0.373  -0.030 C21  HY2 21 
HY2 C22  C22  C 0 1 N N N 32.712 20.231 43.435 -4.671  0.794  -0.796 C22  HY2 22 
HY2 C23  C23  C 0 1 N N N 32.043 21.150 42.387 -5.234  0.647  0.618  C23  HY2 23 
HY2 N24  N24  N 0 1 N N N 30.547 21.128 42.413 -6.663  0.335  0.545  N24  HY2 24 
HY2 C25  C25  C 0 1 N N N 29.865 22.186 42.959 -7.043  -0.956 0.494  C25  HY2 25 
HY2 O25  O25  O 0 1 N N N 30.437 23.143 43.452 -6.203  -1.835 0.509  O25  HY2 26 
HY2 C26  C26  C 0 1 Y N N 28.365 22.164 42.905 -8.469  -1.309 0.420  C26  HY2 27 
HY2 C27  C27  C 0 1 Y N N 27.634 23.250 43.399 -8.904  -2.625 0.364  C27  HY2 28 
HY2 C28  C28  C 0 1 Y N N 26.240 23.233 43.378 -10.263 -2.908 0.294  C28  HY2 29 
HY2 C29  C29  C 0 1 Y N N 25.565 22.129 42.861 -11.201 -1.916 0.278  C29  HY2 30 
HY2 C2D  C2D  C 0 1 N N N 27.321 23.345 58.845 11.462  1.402  2.023  C2D  HY2 31 
HY2 C30  C30  C 0 1 Y N N 26.284 21.056 42.338 -10.801 -0.569 0.332  C30  HY2 32 
HY2 C31  C31  C 0 1 Y N N 25.618 19.962 41.785 -11.728 0.488  0.317  C31  HY2 33 
HY2 C32  C32  C 0 1 Y N N 26.348 18.905 41.243 -11.291 1.780  0.372  C32  HY2 34 
HY2 C33  C33  C 0 1 Y N N 27.741 18.946 41.249 -9.938  2.089  0.442  C33  HY2 35 
HY2 C34  C34  C 0 1 Y N N 27.684 21.082 42.359 -9.425  -0.269 0.404  C34  HY2 36 
HY2 C35  C35  C 0 1 Y N N 28.416 20.035 41.814 -8.992  1.075  0.459  C35  HY2 37 
HY2 C36  C36  C 0 1 N N N 29.914 20.070 41.814 -7.549  1.349  0.537  C36  HY2 38 
HY2 O36  O36  O 0 1 N N N 30.543 19.167 41.287 -7.153  2.497  0.591  O36  HY2 39 
HY2 C5A  C5A  C 0 1 Y N N 30.602 23.981 55.357 8.024   -0.732 -0.283 C5A  HY2 40 
HY2 C5D  C5D  C 0 1 N N N 30.043 24.577 56.635 9.506   -0.522 -0.331 C5D  HY2 41 
HY2 C6D  C6D  C 0 1 Y N N 31.803 24.524 54.867 7.447   -1.970 -0.039 C6D  HY2 42 
HY2 C8D  C8D  C 0 1 Y N N 31.731 23.095 52.925 5.305   -0.944 -0.423 C8D  HY2 43 
HY2 C9A  C9A  C 0 1 Y N N 29.955 22.987 54.586 7.283   0.406  -0.524 C9A  HY2 44 
HY2 H6D  H6D  H 0 1 N N N 32.297 25.302 55.430 8.057   -2.830 0.198  H6D  HY2 45 
HY2 H9   H9   H 0 1 N N N 30.008 21.834 52.783 5.293   1.155  -0.864 H9   HY2 46 
HY2 HN10 HN10 H 0 0 N N N 28.622 21.708 54.192 8.068   2.015  -1.478 HN10 HY2 47 
HY2 H11  H11  H 0 1 N N N 27.180 22.119 56.229 9.017   3.165  0.372  H11  HY2 48 
HY2 H1   H1   H 0 1 N N N 27.633 21.206 58.536 10.011  3.029  2.149  H1   HY2 49 
HY2 H1A  H1A  H 0 1 N N N 29.990 21.994 57.337 8.437   0.496  1.942  H1A  HY2 50 
HY2 H1B  H1B  H 0 1 N N N 28.912 21.992 59.482 9.806   1.764  3.400  H1B  HY2 51 
HY2 H17  H17  H 0 1 N N N 31.647 22.651 46.591 -1.153  2.742  -1.245 H17  HY2 52 
HY2 H17A H17A H 0 0 N N N 33.308 23.312 46.830 -0.842  2.137  -2.890 H17A HY2 53 
HY2 H18  H18  H 0 1 N N N 32.800 22.726 44.438 -3.282  2.333  -2.429 H18  HY2 54 
HY2 H18A H18A H 0 0 N N N 34.199 21.816 45.117 -2.803  0.644  -2.727 H18A HY2 55 
HY2 H20  H20  H 0 1 N N N 32.222 18.693 45.536 -2.879  -0.277 0.818  H20  HY2 56 
HY2 H20A H20A H 0 0 N N N 33.834 19.433 45.822 -2.567  -0.882 -0.827 H20A HY2 57 
HY2 H21  H21  H 0 1 N N N 32.539 19.284 47.940 -0.438  -0.473 0.357  H21  HY2 58 
HY2 H21A H21A H 0 0 N N N 31.209 20.241 47.199 -0.917  1.216  0.654  H21A HY2 59 
HY2 H22  H22  H 0 1 N N N 33.799 20.243 43.269 -5.193  1.599  -1.313 H22  HY2 60 
HY2 H2D  H2D  H 0 1 N N N 26.368 23.247 58.305 12.230  2.158  2.186  H2D  HY2 61 
HY2 H2DA H2DA H 0 0 N N N 27.074 23.495 59.906 11.672  0.503  2.602  H2DA HY2 62 
HY2 H22A H22A H 0 0 N N N 32.318 19.212 43.310 -4.811  -0.139 -1.342 H22A HY2 63 
HY2 H23  H23  H 0 1 N N N 32.369 22.182 42.585 -4.712  -0.159 1.135  H23  HY2 64 
HY2 H23A H23A H 0 0 N N N 32.368 20.818 41.390 -5.093  1.580  1.164  H23A HY2 65 
HY2 H29  H29  H 0 1 N N N 24.485 22.105 42.866 -12.250 -2.166 0.223  H29  HY2 66 
HY2 H28  H28  H 0 1 N N N 25.684 24.075 43.762 -10.585 -3.938 0.251  H28  HY2 67 
HY2 H27  H27  H 0 1 N N N 28.154 24.108 43.800 -8.186  -3.431 0.376  H27  HY2 68 
HY2 H31  H31  H 0 1 N N N 24.538 19.934 41.777 -12.786 0.277  0.263  H31  HY2 69 
HY2 H32  H32  H 0 1 N N N 25.834 18.055 40.819 -12.015 2.582  0.359  H32  HY2 70 
HY2 H33  H33  H 0 1 N N N 28.304 18.133 40.815 -9.623  3.121  0.484  H33  HY2 71 
HY2 H3   H3   H 0 1 N N N 28.777 24.940 59.094 12.066  0.336  0.208  H3   HY2 72 
HY2 H13  H13  H 0 1 N N N 32.587 20.641 52.177 3.394   0.876  -0.083 H13  HY2 73 
HY2 H3A  H3A  H 0 1 N N N 27.535 25.266 57.852 11.403  1.975  -0.090 H3A  HY2 74 
HY2 H13A H13A H 0 0 N N N 31.152 21.017 51.162 3.563   0.507  -1.816 H13A HY2 75 
HY2 H12  H12  H 0 1 N N N 35.166 25.938 53.189 5.689   -5.260 0.610  H12  HY2 76 
HY2 H12A H12A H 0 0 N N N 33.570 26.618 53.654 6.987   -4.554 -0.383 H12A HY2 77 
HY2 H12B H12B H 0 0 N N N 34.467 25.565 54.801 6.871   -4.151 1.346  H12B HY2 78 
HY2 H14  H14  H 0 1 N N N 34.079 21.305 50.284 1.564   -0.955 -1.700 H14  HY2 79 
HY2 H14A H14A H 0 0 N N N 32.981 19.954 49.829 1.395   -0.586 0.033  H14A HY2 80 
HY2 H15  H15  H 0 1 N N N 31.388 21.801 48.927 1.119   1.819  -0.506 H15  HY2 81 
HY2 H15A H15A H 0 0 N N N 32.808 22.904 49.053 1.288   1.450  -2.239 H15A HY2 82 
HY2 H11A H11A H 0 0 N N N 28.415 20.803 56.084 7.478   2.714  1.182  H11A HY2 83 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HY2 C1  C1A  SING N N 1  
HY2 C1  C2D  SING N N 2  
HY2 C1  H1   SING N N 3  
HY2 C1  H1B  SING N N 4  
HY2 O2  C7   SING N N 5  
HY2 O2  C12  SING N N 6  
HY2 C3  N4   SING N N 7  
HY2 C3  C2D  SING N N 8  
HY2 C3  H3   SING N N 9  
HY2 C3  H3A  SING N N 10 
HY2 N4  C1A  SING N N 11 
HY2 N4  C5D  SING N N 12 
HY2 O5  C5D  DOUB N N 13 
HY2 C7  C6D  DOUB Y N 14 
HY2 C7  C8D  SING Y N 15 
HY2 C9  C8D  DOUB Y N 16 
HY2 C9  C9A  SING Y N 17 
HY2 C9  H9   SING N N 18 
HY2 N10 C11  SING N N 19 
HY2 N10 C9A  SING N N 20 
HY2 N10 HN10 SING N N 21 
HY2 C11 C1A  SING N N 22 
HY2 C11 H11  SING N N 23 
HY2 C12 H12  SING N N 24 
HY2 C12 H12A SING N N 25 
HY2 C12 H12B SING N N 26 
HY2 C13 O13  SING N N 27 
HY2 C13 C14  SING N N 28 
HY2 C13 H13  SING N N 29 
HY2 C13 H13A SING N N 30 
HY2 O13 C8D  SING N N 31 
HY2 C14 C15  SING N N 32 
HY2 C14 H14  SING N N 33 
HY2 C14 H14A SING N N 34 
HY2 C15 N16  SING N N 35 
HY2 C15 H15  SING N N 36 
HY2 C15 H15A SING N N 37 
HY2 N16 C17  SING N N 38 
HY2 N16 C21  SING N N 39 
HY2 C17 C18  SING N N 40 
HY2 C17 H17  SING N N 41 
HY2 C17 H17A SING N N 42 
HY2 C18 N19  SING N N 43 
HY2 C18 H18  SING N N 44 
HY2 C18 H18A SING N N 45 
HY2 N19 C20  SING N N 46 
HY2 N19 C22  SING N N 47 
HY2 C1A H1A  SING N N 48 
HY2 C20 C21  SING N N 49 
HY2 C20 H20  SING N N 50 
HY2 C20 H20A SING N N 51 
HY2 C21 H21  SING N N 52 
HY2 C21 H21A SING N N 53 
HY2 C22 C23  SING N N 54 
HY2 C22 H22  SING N N 55 
HY2 C22 H22A SING N N 56 
HY2 C23 N24  SING N N 57 
HY2 C23 H23  SING N N 58 
HY2 C23 H23A SING N N 59 
HY2 N24 C25  SING N N 60 
HY2 N24 C36  SING N N 61 
HY2 C25 O25  DOUB N N 62 
HY2 C25 C26  SING N N 63 
HY2 C26 C27  DOUB Y N 64 
HY2 C26 C34  SING Y N 65 
HY2 C27 C28  SING Y N 66 
HY2 C27 H27  SING N N 67 
HY2 C28 C29  DOUB Y N 68 
HY2 C28 H28  SING N N 69 
HY2 C29 C30  SING Y N 70 
HY2 C29 H29  SING N N 71 
HY2 C2D H2D  SING N N 72 
HY2 C2D H2DA SING N N 73 
HY2 C30 C31  DOUB Y N 74 
HY2 C30 C34  SING Y N 75 
HY2 C31 C32  SING Y N 76 
HY2 C31 H31  SING N N 77 
HY2 C32 C33  DOUB Y N 78 
HY2 C32 H32  SING N N 79 
HY2 C33 C35  SING Y N 80 
HY2 C33 H33  SING N N 81 
HY2 C34 C35  DOUB Y N 82 
HY2 C35 C36  SING N N 83 
HY2 C36 O36  DOUB N N 84 
HY2 C5A C5D  SING N N 85 
HY2 C5A C6D  SING Y N 86 
HY2 C5A C9A  DOUB Y N 87 
HY2 C6D H6D  SING N N 88 
HY2 C11 H11A SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HY2 SMILES           ACDLabs              12.01 "O=C6N7C(CNc5cc(OCCCN4CCN(CCN3C(=O)c1c2c(ccc1)cccc2C3=O)CC4)c(OC)cc56)CCC7" 
HY2 SMILES_CANONICAL CACTVS               3.370 "COc1cc2C(=O)N3CCC[C@H]3CNc2cc1OCCCN4CCN(CC4)CCN5C(=O)c6cccc7cccc(C5=O)c67" 
HY2 SMILES           CACTVS               3.370 "COc1cc2C(=O)N3CCC[CH]3CNc2cc1OCCCN4CCN(CC4)CCN5C(=O)c6cccc7cccc(C5=O)c67" 
HY2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "COc1cc2c(cc1OCCCN3CCN(CC3)CCN4C(=O)c5cccc6c5c(ccc6)C4=O)NC[C@@H]7CCCN7C2=O" 
HY2 SMILES           "OpenEye OEToolkits" 1.7.0 "COc1cc2c(cc1OCCCN3CCN(CC3)CCN4C(=O)c5cccc6c5c(ccc6)C4=O)NCC7CCCN7C2=O" 
HY2 InChI            InChI                1.03  
"InChI=1S/C34H39N5O5/c1-43-29-20-27-28(35-22-24-8-4-12-38(24)34(27)42)21-30(29)44-19-5-11-36-13-15-37(16-14-36)17-18-39-32(40)25-9-2-6-23-7-3-10-26(31(23)25)33(39)41/h2-3,6-7,9-10,20-21,24,35H,4-5,8,11-19,22H2,1H3/t24-/m0/s1" 
HY2 InChIKey         InChI                1.03  XTTOPRBRXFADJO-DEOSSOPVSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
HY2 "SYSTEMATIC NAME" ACDLabs 12.01 "2-{2-[4-(3-{[(11aS)-7-methoxy-5-oxo-2,3,5,10,11,11a-hexahydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-8-yl]oxy}propyl)piperazin-1-yl]ethyl}-1H-benzo[de]isoquinoline-1,3(2H)-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HY2 "Create component"     2010-05-19 RCSB 
HY2 "Modify aromatic_flag" 2011-06-04 RCSB 
HY2 "Modify descriptor"    2011-06-04 RCSB 
# 
