data_A1BD2
# 
_chem_comp.id                                    A1BD2 
_chem_comp.name                                  dyphylline 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H14 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-10-22 
_chem_comp.pdbx_modified_date                    2024-10-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        254.243 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1BD2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9E1A 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1BD2 N1  N1  N 0 1 N N N N N N 175.832 227.601 247.809 2.553  -0.820 -0.252 N1  A1BD2 1  
A1BD2 N3  N2  N 0 1 Y N N N N N 173.370 229.781 249.016 -0.846 -0.959 0.666  N3  A1BD2 2  
A1BD2 C4  C1  C 0 1 N N N N N N 175.576 229.190 250.172 0.684  1.092  0.373  C4  A1BD2 3  
A1BD2 C5  C2  C 0 1 N N N N N N 176.839 227.582 248.740 2.861  0.491  -0.256 C5  A1BD2 4  
A1BD2 C6  C3  C 0 1 N N N N N N 177.749 228.346 250.888 2.336  2.843  0.029  C6  A1BD2 5  
A1BD2 C7  C4  C 0 1 Y N N N N N 172.867 229.355 247.821 -0.576 -2.270 0.513  C7  A1BD2 6  
A1BD2 C8  C5  C 0 1 N N N N N N 172.761 230.707 249.964 -2.133 -0.374 1.051  C8  A1BD2 7  
A1BD2 C10 C6  C 0 1 N N N N N N 174.433 232.538 250.195 -4.194 0.751  0.197  C10 A1BD2 8  
A1BD2 C1  C7  C 0 1 N N N N N N 175.973 226.774 246.610 3.578  -1.813 -0.584 C1  A1BD2 9  
A1BD2 C2  C8  C 0 1 Y N N N N N 174.725 228.379 248.020 1.271  -1.232 0.073  C2  A1BD2 10 
A1BD2 C3  C9  C 0 1 Y N N N N N 174.595 229.143 249.149 0.318  -0.271 0.390  C3  A1BD2 11 
A1BD2 O1  O1  O 0 1 N N N N N N 175.532 229.849 251.203 -0.133 1.952  0.648  O1  A1BD2 12 
A1BD2 N2  N3  N 0 1 N N N N N N 176.673 228.369 249.885 1.949  1.430  0.049  N2  A1BD2 13 
A1BD2 O2  O2  O 0 1 N N N N N N 177.826 226.895 248.565 3.992  0.833  -0.544 O2  A1BD2 14 
A1BD2 N4  N4  N 0 1 Y N N N N N 173.663 228.496 247.187 0.676  -2.424 0.163  N4  A1BD2 15 
A1BD2 C9  C10 C 0 1 N N R N N N 173.097 232.130 249.617 -2.908 0.028  -0.206 C9  A1BD2 16 
A1BD2 O3  O3  O 0 1 N N N N N N 174.609 233.945 250.100 -4.860 1.228  -0.974 O3  A1BD2 17 
A1BD2 O4  O4  O 0 1 N N N N N N 172.080 232.968 250.142 -3.234 -1.143 -0.958 O4  A1BD2 18 
A1BD2 H1  H1  H 0 1 N N N N N N 177.483 229.006 251.727 3.385  2.929  -0.252 H1  A1BD2 19 
A1BD2 H2  H2  H 0 1 N N N N N N 177.883 227.319 251.258 1.721  3.378  -0.695 H2  A1BD2 20 
A1BD2 H3  H3  H 0 1 N N N N N N 178.686 228.695 250.429 2.188  3.274  1.019  H3  A1BD2 21 
A1BD2 H4  H4  H 0 1 N N N N N N 171.916 229.683 247.428 -1.284 -3.072 0.658  H4  A1BD2 22 
A1BD2 H5  H5  H 0 1 N N N N N N 171.669 230.579 249.941 -2.711 -1.106 1.615  H5  A1BD2 23 
A1BD2 H6  H6  H 0 1 N N N N N N 173.135 230.485 250.974 -1.961 0.507  1.669  H6  A1BD2 24 
A1BD2 H7  H7  H 0 1 N N N N N N 174.476 232.239 251.253 -4.848 0.060  0.730  H7  A1BD2 25 
A1BD2 H8  H8  H 0 1 N N N N N N 175.237 232.034 249.638 -3.951 1.592  0.845  H8  A1BD2 26 
A1BD2 H9  H9  H 0 1 N N N N N N 176.932 226.236 246.646 3.564  -2.004 -1.657 H9  A1BD2 27 
A1BD2 H10 H10 H 0 1 N N N N N N 175.147 226.049 246.566 4.558  -1.434 -0.296 H10 A1BD2 28 
A1BD2 H11 H11 H 0 1 N N N N N N 175.946 227.416 245.717 3.374  -2.740 -0.047 H11 A1BD2 29 
A1BD2 H12 H12 H 0 1 N N N N N N 173.140 232.229 248.522 -2.293 0.691  -0.814 H12 A1BD2 30 
A1BD2 H13 H13 H 0 1 N N N N N N 175.452 234.185 250.467 -5.685 1.697  -0.794 H13 A1BD2 31 
A1BD2 H14 H14 H 0 1 N N N N N N 172.276 233.874 249.932 -3.781 -1.779 -0.478 H14 A1BD2 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1BD2 C1  N1  SING N N 1  
A1BD2 N4  C7  DOUB Y N 2  
A1BD2 N4  C2  SING Y N 3  
A1BD2 N1  C2  SING N N 4  
A1BD2 N1  C5  SING N N 5  
A1BD2 C7  N3  SING Y N 6  
A1BD2 C2  C3  DOUB Y N 7  
A1BD2 O2  C5  DOUB N N 8  
A1BD2 C5  N2  SING N N 9  
A1BD2 N3  C3  SING Y N 10 
A1BD2 N3  C8  SING N N 11 
A1BD2 C3  C4  SING N N 12 
A1BD2 C9  C8  SING N N 13 
A1BD2 C9  O4  SING N N 14 
A1BD2 C9  C10 SING N N 15 
A1BD2 N2  C4  SING N N 16 
A1BD2 N2  C6  SING N N 17 
A1BD2 O3  C10 SING N N 18 
A1BD2 C4  O1  DOUB N N 19 
A1BD2 C6  H1  SING N N 20 
A1BD2 C6  H2  SING N N 21 
A1BD2 C6  H3  SING N N 22 
A1BD2 C7  H4  SING N N 23 
A1BD2 C8  H5  SING N N 24 
A1BD2 C8  H6  SING N N 25 
A1BD2 C10 H7  SING N N 26 
A1BD2 C10 H8  SING N N 27 
A1BD2 C1  H9  SING N N 28 
A1BD2 C1  H10 SING N N 29 
A1BD2 C1  H11 SING N N 30 
A1BD2 C9  H12 SING N N 31 
A1BD2 O3  H13 SING N N 32 
A1BD2 O4  H14 SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1BD2 SMILES           ACDLabs              14.52   "OCC(O)Cn1cnc2c1C(=O)N(C)C(=O)N2C"                                                                         
A1BD2 InChI            InChI                1.06    "InChI=1S/C10H14N4O4/c1-12-8-7(9(17)13(2)10(12)18)14(5-11-8)3-6(16)4-15/h5-6,15-16H,3-4H2,1-2H3/t6-/m1/s1" 
A1BD2 InChIKey         InChI                1.06    KSCFJBIXMNOVSH-ZCFIWIBFSA-N                                                                                
A1BD2 SMILES_CANONICAL CACTVS               3.385   "CN1C(=O)N(C)c2ncn(C[C@@H](O)CO)c2C1=O"                                                                    
A1BD2 SMILES           CACTVS               3.385   "CN1C(=O)N(C)c2ncn(C[CH](O)CO)c2C1=O"                                                                      
A1BD2 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CN1c2c(n(cn2)C[C@H](CO)O)C(=O)N(C1=O)C"                                                                   
A1BD2 SMILES           "OpenEye OEToolkits" 3.1.0.0 "CN1c2c(n(cn2)CC(CO)O)C(=O)N(C1=O)C"                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1BD2 "SYSTEMATIC NAME" ACDLabs              14.52   "7-[(2R)-2,3-dihydroxypropyl]-1,3-dimethyl-3,7-dihydro-1H-purine-2,6-dione" 
A1BD2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "7-[(2~{R})-2,3-bis(oxidanyl)propyl]-1,3-dimethyl-purine-2,6-dione"         
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1BD2 "Create component" 2024-10-22 RCSB 
A1BD2 "Initial release"  2024-10-30 RCSB 
# 
