data_ZM1
#

_chem_comp.id                                   ZM1
_chem_comp.name                                 "2-acetamido-2,5-dideoxy-6-O-phosphono-D-lyxo-hexose"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H16 N O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-06
_chem_comp.pdbx_modified_date                   2022-04-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       285.188
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ZM1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7MQT
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZM1  C10  C1   C  0  1  N  N  N  -61.847  381.785  -43.597  -1.868   0.094   0.037  C10  ZM1   1  
ZM1  C01  C2   C  0  1  N  N  N  -65.340  387.742  -41.867   4.221   2.954  -0.596  C01  ZM1   2  
ZM1  C02  C3   C  0  1  N  N  N  -63.839  387.636  -42.006   4.047   1.608   0.060  C02  ZM1   3  
ZM1  N03  N1   N  0  1  N  N  N  -63.288  386.463  -42.685   3.245   0.683  -0.504  N03  ZM1   4  
ZM1  C04  C4   C  0  1  N  N  S  -61.844  386.293  -42.825   3.076  -0.625   0.133  C04  ZM1   5  
ZM1  C05  C5   C  0  1  N  N  R  -61.434  384.841  -42.542   1.733  -1.227  -0.285  C05  ZM1   6  
ZM1  O06  O1   O  0  1  N  N  N  -62.434  384.152  -41.821   1.552  -2.487   0.363  O06  ZM1   7  
ZM1  C07  C6   C  0  1  N  N  R  -61.222  384.154  -43.888   0.601  -0.279   0.119  C07  ZM1   8  
ZM1  O08  O2   O  0  1  N  N  N  -62.453  384.072  -44.561   0.650  -0.054   1.529  O08  ZM1   9  
ZM1  C09  C7   C  0  1  N  N  N  -60.680  382.755  -43.626  -0.745  -0.905  -0.252  C09  ZM1  10  
ZM1  O11  O3   O  0  1  N  N  N  -62.410  381.834  -42.324  -3.125  -0.491  -0.309  O11  ZM1  11  
ZM1  P12  P1   P  0  1  N  N  N  -61.929  380.579  -41.365  -4.528   0.280  -0.135  P12  ZM1  12  
ZM1  O13  O4   O  0  1  N  N  N  -60.751  381.120  -40.563  -4.803   0.547   1.428  O13  ZM1  13  
ZM1  O14  O5   O  0  1  N  N  N  -61.577  379.393  -42.232  -4.473   1.573  -0.854  O14  ZM1  14  
ZM1  O15  O6   O  0  1  N  N  N  -63.119  380.145  -40.526  -5.715  -0.622  -0.743  O15  ZM1  15  
ZM1  C16  C8   C  0  1  N  N  N  -61.366  386.707  -44.230   4.192  -1.541  -0.297  C16  ZM1  16  
ZM1  O17  O7   O  0  1  N  N  N  -60.224  386.707  -44.561   5.080  -1.122  -1.000  O17  ZM1  17  
ZM1  O18  O8   O  0  1  N  N  N  -63.176  388.502  -41.539   4.629   1.357   1.094  O18  ZM1  18  
ZM1  H1   H1   H  0  1  N  N  N  -62.595  382.077  -44.349  -1.865   0.347   1.097  H1   ZM1  19  
ZM1  H2   H2   H  0  1  N  N  N  -61.492  380.766  -43.810  -1.712   0.997  -0.553  H2   ZM1  20  
ZM1  H3   H3   H  0  1  N  N  N  -65.594  388.663  -41.321   5.060   2.914  -1.291  H3   ZM1  21  
ZM1  H4   H4   H  0  1  N  N  N  -65.800  387.770  -42.866   3.312   3.214  -1.138  H4   ZM1  22  
ZM1  H5   H5   H  0  1  N  N  N  -65.719  386.871  -41.313   4.417   3.707   0.168  H5   ZM1  23  
ZM1  H6   H6   H  0  1  N  N  N  -63.906  385.771  -43.057   2.779   0.884  -1.331  H6   ZM1  24  
ZM1  H7   H7   H  0  1  N  N  N  -61.337  386.938  -42.092   3.099  -0.508   1.217  H7   ZM1  25  
ZM1  H8   H8   H  0  1  N  N  N  -60.485  384.840  -41.986   1.719  -1.368  -1.366  H8   ZM1  26  
ZM1  H9   H9   H  0  1  N  N  N  -62.569  384.576  -40.982   1.554  -2.437   1.328  H9   ZM1  27  
ZM1  H10  H10  H  0  1  N  N  N  -60.488  384.725  -44.476   0.718   0.670  -0.405  H10  ZM1  28  
ZM1  H11  H11  H  0  1  N  N  N  -62.786  384.947  -44.721   0.552  -0.857   2.059  H11  ZM1  29  
ZM1  H12  H12  H  0  1  N  N  N  -59.981  382.471  -44.427  -0.901  -1.808   0.338  H12  ZM1  30  
ZM1  H13  H13  H  0  1  N  N  N  -60.156  382.735  -42.659  -0.748  -1.158  -1.312  H13  ZM1  31  
ZM1  H14  H14  H  0  1  N  N  N  -59.976  380.604  -40.751  -4.852  -0.258   1.962  H14  ZM1  32  
ZM1  H15  H15  H  0  1  N  N  N  -63.351  379.250  -40.744  -6.591  -0.219  -0.672  H15  ZM1  33  
ZM1  H16  H16  H  0  1  N  N  N  -62.108  387.014  -44.953   4.198  -2.573   0.023  H16  ZM1  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZM1  O17  C16  DOUB  N  N   1  
ZM1  O08  C07  SING  N  N   2  
ZM1  C16  C04  SING  N  N   3  
ZM1  C07  C09  SING  N  N   4  
ZM1  C07  C05  SING  N  N   5  
ZM1  C09  C10  SING  N  N   6  
ZM1  C10  O11  SING  N  N   7  
ZM1  C04  N03  SING  N  N   8  
ZM1  C04  C05  SING  N  N   9  
ZM1  N03  C02  SING  N  N  10  
ZM1  C05  O06  SING  N  N  11  
ZM1  O11  P12  SING  N  N  12  
ZM1  O14  P12  DOUB  N  N  13  
ZM1  C02  C01  SING  N  N  14  
ZM1  C02  O18  DOUB  N  N  15  
ZM1  P12  O13  SING  N  N  16  
ZM1  P12  O15  SING  N  N  17  
ZM1  C10  H1   SING  N  N  18  
ZM1  C10  H2   SING  N  N  19  
ZM1  C01  H3   SING  N  N  20  
ZM1  C01  H4   SING  N  N  21  
ZM1  C01  H5   SING  N  N  22  
ZM1  N03  H6   SING  N  N  23  
ZM1  C04  H7   SING  N  N  24  
ZM1  C05  H8   SING  N  N  25  
ZM1  O06  H9   SING  N  N  26  
ZM1  C07  H10  SING  N  N  27  
ZM1  O08  H11  SING  N  N  28  
ZM1  C09  H12  SING  N  N  29  
ZM1  C09  H13  SING  N  N  30  
ZM1  O13  H14  SING  N  N  31  
ZM1  O15  H15  SING  N  N  32  
ZM1  C16  H16  SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZM1  SMILES            ACDLabs               12.01  "O=P(O)(O)OCCC(O)C(O)C(C=O)NC(C)=O"  
ZM1  InChI             InChI                 1.03   "InChI=1S/C8H16NO8P/c1-5(11)9-6(4-10)8(13)7(12)2-3-17-18(14,15)16/h4,6-8,12-13H,2-3H2,1H3,(H,9,11)(H2,14,15,16)/t6-,7-,8-/m1/s1"  
ZM1  InChIKey          InChI                 1.03   SJEDNRVDWMBCDP-BWZBUEFSSA-N  
ZM1  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@H](C=O)[C@@H](O)[C@H](O)CCO[P](O)(O)=O"  
ZM1  SMILES            CACTVS                3.385  "CC(=O)N[CH](C=O)[CH](O)[CH](O)CCO[P](O)(O)=O"  
ZM1  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(=O)N[C@H](C=O)[C@H]([C@@H](CCOP(=O)(O)O)O)O"  
ZM1  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(=O)NC(C=O)C(C(CCOP(=O)(O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ZM1  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-acetamido-2,5-dideoxy-6-O-phosphono-D-lyxo-hexose"  
ZM1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(3~{R},4~{R},5~{S})-5-acetamido-3,4-bis(oxidanyl)-6-oxidanylidene-hexyl] dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZM1  "Create component"  2021-05-06  RCSB  
ZM1  "Initial release"   2022-04-20  RCSB  
##
