data_Z61
#

_chem_comp.id                                   Z61
_chem_comp.name                                 2-deoxy-alpha-D-arabino-hexopyranose
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-deoxy-alpha-D-glucopyranose; 2-deoxy-alpha-D-mannopyranose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-12-18
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       164.156
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Z61
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1BYD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z61  O4   O4   O  0  1  N  N  N  -0.574  31.646  30.846   0.233   2.255   0.588  O4   Z61   1  
Z61  C1   C1   C  0  1  N  N  S  -3.456  29.583  33.185   0.386  -1.822  -0.304  C1   Z61   2  
Z61  C2   C2   C  0  1  N  N  N  -3.338  31.107  33.344   1.645  -1.009  -0.618  C2   Z61   3  
Z61  C3   C3   C  0  1  N  N  R  -2.621  31.781  32.189   1.602   0.306   0.167  C3   Z61   4  
Z61  C4   C4   C  0  1  N  N  S  -1.307  31.065  31.954   0.318   1.061  -0.192  C4   Z61   5  
Z61  C5   C5   C  0  1  N  N  R  -1.588  29.625  31.677  -0.889   0.168   0.105  C5   Z61   6  
Z61  C6   C6   C  0  1  N  N  N  -0.275  28.931  31.531  -2.173   0.892  -0.307  C6   Z61   7  
Z61  O1   O1   O  0  1  N  Y  N  -4.403  29.184  32.238   0.363  -2.148   1.087  O1   Z61   8  
Z61  O3   O3   O  0  1  N  N  N  -2.312  33.097  32.577   2.737   1.104  -0.176  O3   Z61   9  
Z61  O5   O5   O  0  1  N  N  N  -2.207  28.993  32.823  -0.772  -1.051  -0.632  O5   Z61  10  
Z61  O6   O6   O  0  1  N  N  N  -0.388  27.559  31.399  -3.305   0.109   0.076  O6   Z61  11  
Z61  H1   H1   H  0  1  N  N  N  -3.752  29.183  34.166   0.390  -2.740  -0.892  H1   Z61  12  
Z61  H21  H21  H  0  1  N  N  N  -4.351  31.529  33.419   2.527  -1.578  -0.327  H21  Z61  13  
Z61  H22  H22  H  0  1  N  N  N  -2.783  31.319  34.270   1.683  -0.795  -1.686  H22  Z61  14  
Z61  H3   H3   H  0  1  N  N  N  -3.242  31.752  31.282   1.613   0.093   1.236  H3   Z61  15  
Z61  H4   H4   H  0  1  N  N  N  -0.702  31.138  32.870   0.331   1.318  -1.251  H4   Z61  16  
Z61  H5   H5   H  0  1  N  N  N  -2.199  29.510  30.769  -0.923  -0.054   1.171  H5   Z61  17  
Z61  H61  H61  H  0  1  N  N  N   0.230  29.326  30.637  -2.217   1.862   0.188  H61  Z61  18  
Z61  H62  H62  H  0  1  N  N  N   0.334  29.146  32.422  -2.178   1.035  -1.388  H62  Z61  19  
Z61  HO1  HO1  H  0  1  N  Y  N  -4.424  28.235  32.191  -0.409  -2.664   1.357  HO1  Z61  20  
Z61  HO3  HO3  H  0  1  N  Y  N  -1.861  33.539  31.867   3.586   0.684   0.018  HO3  Z61  21  
Z61  HO6  HO6  H  0  1  N  Y  N   0.477  27.177  31.310  -4.155   0.508  -0.154  HO6  Z61  22  
Z61  HO4  HO4  H  0  1  N  Y  N   0.243  31.176  30.725   0.970   2.866   0.454  HO4  Z61  23  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z61  O4  C4   SING  N  N   1  
Z61  C1  C2   SING  N  N   2  
Z61  C1  O1   SING  N  N   3  
Z61  C1  O5   SING  N  N   4  
Z61  C1  H1   SING  N  N   5  
Z61  C2  C3   SING  N  N   6  
Z61  C2  H21  SING  N  N   7  
Z61  C2  H22  SING  N  N   8  
Z61  C3  C4   SING  N  N   9  
Z61  C3  O3   SING  N  N  10  
Z61  C3  H3   SING  N  N  11  
Z61  C4  C5   SING  N  N  12  
Z61  C4  H4   SING  N  N  13  
Z61  C5  C6   SING  N  N  14  
Z61  C5  O5   SING  N  N  15  
Z61  C5  H5   SING  N  N  16  
Z61  C6  O6   SING  N  N  17  
Z61  C6  H61  SING  N  N  18  
Z61  C6  H62  SING  N  N  19  
Z61  O1  HO1  SING  N  N  20  
Z61  O3  HO3  SING  N  N  21  
Z61  O6  HO6  SING  N  N  22  
Z61  O4  HO4  SING  N  N  23  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z61  SMILES            ACDLabs               12.01  "OC1C(OC(O)CC1O)CO"  
Z61  InChI             InChI                 1.03   "InChI=1S/C6H12O5/c7-2-4-6(10)3(8)1-5(9)11-4/h3-10H,1-2H2/t3-,4-,5+,6+/m1/s1"  
Z61  InChIKey          InChI                 1.03   PMMURAAUARKVCB-ZXXMMSQZSA-N  
Z61  SMILES_CANONICAL  CACTVS                3.370  "OC[C@H]1O[C@H](O)C[C@@H](O)[C@@H]1O"  
Z61  SMILES            CACTVS                3.370  "OC[CH]1O[CH](O)C[CH](O)[CH]1O"  
Z61  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1[C@H]([C@@H]([C@H](O[C@@H]1O)CO)O)O"  
Z61  SMILES            "OpenEye OEToolkits"  1.7.6  "C1C(C(C(OC1O)CO)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Z61  "SYSTEMATIC NAME"  ACDLabs               12.01  2-deoxy-alpha-D-arabino-hexopyranose  
Z61  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2S,4R,5S,6R)-6-(hydroxymethyl)oxane-2,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
Z61  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
Z61  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
Z61  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
Z61  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z61  "Create component"          2012-12-18  RCSB  
Z61  "Modify atom id"            2020-05-09  RCSB  
Z61  "Modify synonyms"           2020-06-11  RCSB  
Z61  "Modify component atom id"  2020-07-17  RCSB  
Z61  "Initial release"           2020-07-29  RCSB  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  Z61  2-deoxy-alpha-D-glucopyranose  PDB  ?  
2  Z61  2-deoxy-alpha-D-mannopyranose  PDB  ?  
##
