data_YT1
#

_chem_comp.id                                   YT1
_chem_comp.name                                 PB28
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H38 N2 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "1-cyclohexyl-4-{3-[(1R)-5-methoxy-1,2,3,4-tetrahydronaphthalen-1-yl]propyl}piperazine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-31
_chem_comp.pdbx_modified_date                   2021-12-10
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       370.571
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YT1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7M93
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YT1  C4   C1   C  0  1  N  N  N  -5.593  -30.120  33.564   3.850  -2.474   0.734  C4   YT1   1  
YT1  C14  C2   C  0  1  N  N  N  -0.444  -18.507  29.406  -8.433   0.550   0.167  C14  YT1   2  
YT1  C5   C3   C  0  1  N  N  N  -5.168  -29.087  32.532   2.690  -1.634   0.189  C5   YT1   3  
YT1  C6   C4   C  0  1  N  N  R  -3.734  -29.330  32.063   2.872  -0.194   0.666  C6   YT1   4  
YT1  C11  C5   C  0  1  N  N  N  -0.870  -23.173  31.004  -4.283   1.555   0.367  C11  YT1   5  
YT1  C7   C6   C  0  1  N  N  N  -3.434  -28.385  30.888   1.853   0.703  -0.039  C7   YT1   6  
YT1  C8   C7   C  0  1  N  N  N  -3.272  -26.921  31.277   0.440   0.309   0.394  C8   YT1   7  
YT1  C9   C8   C  0  1  N  N  N  -3.239  -25.949  30.111  -0.571   1.286  -0.210  C9   YT1   8  
YT1  C10  C9   C  0  1  N  N  N  -1.336  -24.559  30.611  -2.899   1.950  -0.153  C10  YT1   9  
YT1  C12  C10  C  0  1  N  N  N  -0.731  -20.858  30.212  -6.026  -0.119   0.208  C12  YT1  10  
YT1  C13  C11  C  0  1  N  N  N  -1.248  -19.794  29.253  -7.019   0.944  -0.266  C13  YT1  11  
YT1  N1   N1   N  0  1  N  N  N  -1.299  -22.199  29.994  -4.669   0.259  -0.209  N1   YT1  12  
YT1  C3   C12  C  0  1  N  N  N  -5.601  -31.494  32.945   5.129  -2.056   0.011  C3   YT1  13  
YT1  N    N2   N  0  1  N  N  N  -2.797  -24.603  30.495  -1.928   0.908   0.207  N    YT1  14  
YT1  C    C13  C  0  1  N  N  N  -4.680  -35.420  32.062   8.863  -0.291  -0.770  C    YT1  15  
YT1  O    O1   O  0  1  N  N  N  -4.941  -34.045  32.332   7.592  -0.885  -0.501  O    YT1  16  
YT1  C1   C14  C  0  1  Y  N  N  -4.062  -33.127  31.832   6.566  -0.043  -0.212  C1   YT1  17  
YT1  C15  C15  C  0  1  N  N  N  -0.476  -18.008  30.839  -8.798  -0.802  -0.450  C15  YT1  18  
YT1  C16  C16  C  0  1  N  N  N   0.019  -19.077  31.797  -7.805  -1.864   0.024  C16  YT1  19  
YT1  C17  C17  C  0  1  N  N  N  -0.788  -20.362  31.650  -6.391  -1.470  -0.410  C17  YT1  20  
YT1  C18  C18  C  0  1  N  N  N  -2.764  -22.215  29.917  -3.698  -0.784   0.151  C18  YT1  21  
YT1  C19  C19  C  0  1  N  N  N  -3.240  -23.600  29.517  -2.313  -0.388  -0.369  C19  YT1  22  
YT1  C2   C20  C  0  1  Y  N  N  -4.353  -31.794  32.145   5.300  -0.561   0.060  C2   YT1  23  
YT1  C20  C21  C  0  1  Y  N  N  -3.493  -30.779  31.692   4.262   0.295   0.355  C20  YT1  24  
YT1  C21  C22  C  0  1  Y  N  N  -2.383  -31.122  30.928   4.485   1.666   0.375  C21  YT1  25  
YT1  C22  C23  C  0  1  Y  N  N  -2.115  -32.444  30.623   5.736   2.181   0.105  C22  YT1  26  
YT1  C23  C24  C  0  1  Y  N  N  -2.948  -33.453  31.074   6.781   1.326  -0.189  C23  YT1  27  
YT1  H1   H1   H  0  1  N  N  N  -4.887  -30.104  34.407   3.960  -2.299   1.805  H1   YT1  28  
YT1  H2   H2   H  0  1  N  N  N  -6.603  -29.878  33.927   3.655  -3.531   0.553  H2   YT1  29  
YT1  H3   H3   H  0  1  N  N  N   0.600  -18.699  29.116  -8.472   0.475   1.254  H3   YT1  30  
YT1  H4   H4   H  0  1  N  N  N  -0.872  -17.736  28.748  -9.141   1.307  -0.170  H4   YT1  31  
YT1  H5   H5   H  0  1  N  N  N  -5.234  -28.085  32.980   2.695  -1.663  -0.900  H5   YT1  32  
YT1  H6   H6   H  0  1  N  N  N  -5.843  -29.147  31.666   1.744  -2.028   0.562  H6   YT1  33  
YT1  H7   H7   H  0  1  N  N  N  -3.056  -29.069  32.889   2.707  -0.149   1.742  H7   YT1  34  
YT1  H8   H8   H  0  1  N  N  N   0.228  -23.164  31.077  -4.254   1.476   1.454  H8   YT1  35  
YT1  H9   H9   H  0  1  N  N  N  -1.305  -22.904  31.978  -5.011   2.313   0.076  H9   YT1  36  
YT1  H10  H10  H  0  1  N  N  N  -4.262  -28.459  30.168   2.038   1.743   0.229  H10  YT1  37  
YT1  H11  H11  H  0  1  N  N  N  -2.501  -28.718  30.409   1.948   0.583  -1.118  H11  YT1  38  
YT1  H12  H12  H  0  1  N  N  N  -2.329  -26.818  31.834   0.221  -0.701   0.047  H12  YT1  39  
YT1  H13  H13  H  0  1  N  N  N  -4.115  -26.645  31.928   0.371   0.341   1.482  H13  YT1  40  
YT1  H14  H14  H  0  1  N  N  N  -4.251  -25.877  29.687  -0.352   2.296   0.138  H14  YT1  41  
YT1  H15  H15  H  0  1  N  N  N  -2.549  -26.340  29.349  -0.502   1.254  -1.297  H15  YT1  42  
YT1  H16  H16  H  0  1  N  N  N  -1.013  -25.279  31.377  -2.934   2.056  -1.237  H16  YT1  43  
YT1  H17  H17  H  0  1  N  N  N  -0.889  -24.829  29.643  -2.599   2.898   0.295  H17  YT1  44  
YT1  H18  H18  H  0  1  N  N  N   0.341  -20.951  29.984  -6.065  -0.194   1.294  H18  YT1  45  
YT1  H19  H19  H  0  1  N  N  N  -2.306  -19.589  29.474  -6.981   1.018  -1.353  H19  YT1  46  
YT1  H20  H20  H  0  1  N  N  N  -1.154  -20.160  28.220  -6.759   1.906   0.174  H20  YT1  47  
YT1  H22  H22  H  0  1  N  N  N  -6.472  -31.572  32.277   5.985  -2.532   0.491  H22  YT1  48  
YT1  H23  H23  H  0  1  N  N  N  -5.688  -32.239  33.749   5.076  -2.378  -1.029  H23  YT1  49  
YT1  H25  H25  H  0  1  N  N  N  -5.464  -36.040  32.522   8.779   0.374  -1.630  H25  YT1  50  
YT1  H26  H26  H  0  1  N  N  N  -4.674  -35.585  30.974   9.189   0.279   0.100  H26  YT1  51  
YT1  H27  H27  H  0  1  N  N  N  -3.701  -35.696  32.481   9.592  -1.073  -0.986  H27  YT1  52  
YT1  H28  H28  H  0  1  N  N  N   0.168  -17.121  30.926  -9.805  -1.082  -0.141  H28  YT1  53  
YT1  H29  H29  H  0  1  N  N  N  -1.509  -17.738  31.103  -8.759  -0.727  -1.537  H29  YT1  54  
YT1  H30  H30  H  0  1  N  N  N   1.076  -19.290  31.582  -7.843  -1.939   1.111  H30  YT1  55  
YT1  H31  H31  H  0  1  N  N  N  -0.078  -18.708  32.829  -8.065  -2.827  -0.416  H31  YT1  56  
YT1  H32  H32  H  0  1  N  N  N  -1.835  -20.167  31.926  -6.352  -1.395  -1.497  H32  YT1  57  
YT1  H33  H33  H  0  1  N  N  N  -0.371  -21.131  32.316  -5.683  -2.227  -0.072  H33  YT1  58  
YT1  H34  H34  H  0  1  N  N  N  -3.099  -21.483  29.168  -3.662  -0.889   1.235  H34  YT1  59  
YT1  H35  H35  H  0  1  N  N  N  -3.185  -21.953  30.899  -3.999  -1.731  -0.297  H35  YT1  60  
YT1  H36  H36  H  0  1  N  N  N  -4.339  -23.604  29.468  -2.341  -0.309  -1.456  H36  YT1  61  
YT1  H37  H37  H  0  1  N  N  N  -2.828  -23.852  28.529  -1.585  -1.146  -0.078  H37  YT1  62  
YT1  H38  H38  H  0  1  N  N  N  -1.722  -30.347  30.569   3.670   2.337   0.605  H38  YT1  63  
YT1  H39  H39  H  0  1  N  N  N  -1.248  -32.691  30.028   5.898   3.248   0.123  H39  YT1  64  
YT1  H40  H40  H  0  1  N  N  N  -2.732  -34.485  30.838   7.764   1.723  -0.399  H40  YT1  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YT1  C13  C14  SING  N  N   1  
YT1  C13  C12  SING  N  N   2  
YT1  C14  C15  SING  N  N   3  
YT1  C19  C18  SING  N  N   4  
YT1  C19  N    SING  N  N   5  
YT1  C18  N1   SING  N  N   6  
YT1  N1   C12  SING  N  N   7  
YT1  N1   C11  SING  N  N   8  
YT1  C9   N    SING  N  N   9  
YT1  C9   C8   SING  N  N  10  
YT1  C12  C17  SING  N  N  11  
YT1  N    C10  SING  N  N  12  
YT1  C10  C11  SING  N  N  13  
YT1  C22  C21  DOUB  Y  N  14  
YT1  C22  C23  SING  Y  N  15  
YT1  C15  C16  SING  N  N  16  
YT1  C7   C8   SING  N  N  17  
YT1  C7   C6   SING  N  N  18  
YT1  C21  C20  SING  Y  N  19  
YT1  C23  C1   DOUB  Y  N  20  
YT1  C17  C16  SING  N  N  21  
YT1  C20  C6   SING  N  N  22  
YT1  C20  C2   DOUB  Y  N  23  
YT1  C1   C2   SING  Y  N  24  
YT1  C1   O    SING  N  N  25  
YT1  C    O    SING  N  N  26  
YT1  C6   C5   SING  N  N  27  
YT1  C2   C3   SING  N  N  28  
YT1  C5   C4   SING  N  N  29  
YT1  C3   C4   SING  N  N  30  
YT1  C4   H1   SING  N  N  31  
YT1  C4   H2   SING  N  N  32  
YT1  C14  H3   SING  N  N  33  
YT1  C14  H4   SING  N  N  34  
YT1  C5   H5   SING  N  N  35  
YT1  C5   H6   SING  N  N  36  
YT1  C6   H7   SING  N  N  37  
YT1  C11  H8   SING  N  N  38  
YT1  C11  H9   SING  N  N  39  
YT1  C7   H10  SING  N  N  40  
YT1  C7   H11  SING  N  N  41  
YT1  C8   H12  SING  N  N  42  
YT1  C8   H13  SING  N  N  43  
YT1  C9   H14  SING  N  N  44  
YT1  C9   H15  SING  N  N  45  
YT1  C10  H16  SING  N  N  46  
YT1  C10  H17  SING  N  N  47  
YT1  C12  H18  SING  N  N  48  
YT1  C13  H19  SING  N  N  49  
YT1  C13  H20  SING  N  N  50  
YT1  C3   H22  SING  N  N  51  
YT1  C3   H23  SING  N  N  52  
YT1  C    H25  SING  N  N  53  
YT1  C    H26  SING  N  N  54  
YT1  C    H27  SING  N  N  55  
YT1  C15  H28  SING  N  N  56  
YT1  C15  H29  SING  N  N  57  
YT1  C16  H30  SING  N  N  58  
YT1  C16  H31  SING  N  N  59  
YT1  C17  H32  SING  N  N  60  
YT1  C17  H33  SING  N  N  61  
YT1  C18  H34  SING  N  N  62  
YT1  C18  H35  SING  N  N  63  
YT1  C19  H36  SING  N  N  64  
YT1  C19  H37  SING  N  N  65  
YT1  C21  H38  SING  N  N  66  
YT1  C22  H39  SING  N  N  67  
YT1  C23  H40  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YT1  SMILES            ACDLabs               12.01  "COc1cccc2c1CCCC2CCCN1CCN(CC1)C1CCCCC1"  
YT1  InChI             InChI                 1.03   "InChI=1S/C24H38N2O/c1-27-24-14-6-12-22-20(8-5-13-23(22)24)9-7-15-25-16-18-26(19-17-25)21-10-3-2-4-11-21/h6,12,14,20-21H,2-5,7-11,13,15-19H2,1H3/t20-/m1/s1"  
YT1  InChIKey          InChI                 1.03   PHRCDWVPTULQMT-HXUWFJFHSA-N  
YT1  SMILES_CANONICAL  CACTVS                3.385  "COc1cccc2[C@@H](CCCN3CCN(CC3)C4CCCCC4)CCCc12"  
YT1  SMILES            CACTVS                3.385  "COc1cccc2[CH](CCCN3CCN(CC3)C4CCCCC4)CCCc12"  
YT1  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1cccc2c1CCC[C@@H]2CCCN3CCN(CC3)C4CCCCC4"  
YT1  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1cccc2c1CCCC2CCCN3CCN(CC3)C4CCCCC4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YT1  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-cyclohexyl-4-{3-[(1R)-5-methoxy-1,2,3,4-tetrahydronaphthalen-1-yl]propyl}piperazine"  
YT1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "1-cyclohexyl-4-[3-[(1~{R})-5-methoxy-1,2,3,4-tetrahydronaphthalen-1-yl]propyl]piperazine"  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     YT1
_pdbx_chem_comp_synonyms.name        "1-cyclohexyl-4-{3-[(1R)-5-methoxy-1,2,3,4-tetrahydronaphthalen-1-yl]propyl}piperazine"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YT1  "Create component"  2021-03-31  RCSB  
YT1  "Modify name"       2021-04-02  RCSB  
YT1  "Initial release"   2021-12-15  RCSB  
##
