data_Y91
# 
_chem_comp.id                                    Y91 
_chem_comp.name                                  "(1S,2S)-2-((S)-2-(((((1R,3r,5S)-bicyclo[3.3.1]nonan-3-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H41 N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-02-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        531.663 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y91 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LKR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y91 C17 C1  C 0 1 N N N N N N -24.085 -8.464 4.695  -2.054 2.058  3.214  C17 Y91 1  
Y91 C13 C2  C 0 1 N N S N N N -21.156 -5.951 3.700  -0.197 0.132  0.449  C13 Y91 2  
Y91 C14 C3  C 0 1 N N N N N N -21.862 -7.319 4.028  -0.434 1.204  1.515  C14 Y91 3  
Y91 C15 C4  C 0 1 N N N N N N -23.409 -7.215 4.096  -1.740 0.909  2.254  C15 Y91 4  
Y91 C21 C5  C 0 1 N N N N N N -20.694 -2.953 -0.207 4.526  -0.795 0.673  C21 Y91 5  
Y91 C23 C6  C 0 1 N N N N N N -21.296 -3.406 -2.712 6.969  -1.250 0.651  C23 Y91 6  
Y91 C24 C7  C 0 1 N N S N N N -22.145 -3.065 -3.959 8.361  -0.763 0.276  C24 Y91 7  
Y91 C26 C8  C 0 1 N N R N N N -22.525 -0.808 -3.031 7.501  1.520  -0.140 C26 Y91 8  
Y91 C12 C9  C 0 1 N N N N N N -19.604 -6.128 3.761  -1.223 0.277  -0.646 C12 Y91 9  
Y91 C16 C10 C 0 1 N N N N N N -23.880 -5.949 4.831  -1.595 -0.392 3.046  C16 Y91 10 
Y91 C09 C11 C 0 1 N N S N N N -17.079 -6.600 6.260  -4.044 1.354  -1.668 C09 Y91 11 
Y91 C08 C12 C 0 1 N N S N N N -17.408 -5.792 4.976  -3.473 -0.057 -1.518 C08 Y91 12 
Y91 C06 C13 C 0 1 N N S N N N -16.821 -3.546 3.708  -4.056 -2.464 -1.189 C06 Y91 13 
Y91 C02 C14 C 0 1 N N N N N N -16.125 -2.182 3.712  -3.108 -2.644 -0.024 C02 Y91 14 
Y91 C04 C15 C 0 1 N N N N N N -15.113 -3.222 1.863  -5.106 -3.638 0.620  C04 Y91 15 
Y91 C07 C16 C 0 1 N N N N N N -16.632 -4.421 5.007  -4.608 -1.037 -1.215 C07 Y91 16 
Y91 C05 C17 C 0 1 N N N N N N -16.158 -4.215 2.501  -5.191 -3.478 -0.914 C05 Y91 17 
Y91 C19 C18 C 0 1 N N N N N N -20.998 -4.309 1.811  2.196  -0.324 0.461  C19 Y91 18 
Y91 C22 C19 C 0 1 N N R N N N -21.624 -2.610 -1.413 5.867  -0.412 0.016  C22 Y91 19 
Y91 C25 C20 C 0 1 N N N N N N -22.113 -1.585 -4.259 8.522  0.709  0.658  C25 Y91 20 
Y91 C27 C21 C 0 1 N N N N N N -21.625 -1.104 -1.813 6.088  1.082  0.215  C27 Y91 21 
Y91 C28 C22 C 0 1 N N N N N N -23.990 -1.149 -2.706 7.779  1.389  -1.630 C28 Y91 22 
Y91 C29 C23 C 0 1 N N N N N N -24.348 -2.654 -2.747 7.836  -0.052 -2.105 C29 Y91 23 
Y91 C30 C24 C 0 1 N N N N N N -23.589 -3.512 -3.754 8.656  -0.958 -1.203 C30 Y91 24 
Y91 N03 N1  N 0 1 N N N N N N -15.199 -2.007 2.678  -3.720 -3.309 0.971  N03 Y91 25 
Y91 N11 N2  N 0 1 N N N N N N -18.848 -5.666 4.827  -2.503 -0.078 -0.421 N11 Y91 26 
Y91 N18 N3  N 0 1 N N N N N N -21.601 -5.439 2.386  1.145  0.293  -0.115 N18 Y91 27 
Y91 O01 O1  O 0 1 N N N N N N -16.345 -1.280 4.516  -1.962 -2.247 0.007  O01 Y91 28 
Y91 O10 O2  O 0 1 N N N N N N -15.695 -6.704 6.424  -5.073 1.349  -2.660 O10 Y91 29 
Y91 O20 O3  O 0 1 N N N N N N -21.036 -4.141 0.442  3.443  -0.097 0.005  O20 Y91 30 
Y91 O31 O4  O 0 1 N N N N N N -20.427 -3.481 2.503  2.019  -1.085 1.391  O31 Y91 31 
Y91 O32 O5  O 0 1 N N N N N N -19.047 -6.694 2.817  -0.896 0.713  -1.729 O32 Y91 32 
Y91 H1  H1  H 0 1 N N N N N N -25.175 -8.319 4.711  -2.157 2.985  2.650  H1  Y91 33 
Y91 H2  H2  H 0 1 N N N N N N -23.841 -9.343 4.080  -2.985 1.847  3.741  H2  Y91 34 
Y91 H3  H3  H 0 1 N N N N N N -23.721 -8.622 5.721  -1.243 2.160  3.936  H3  Y91 35 
Y91 H4  H4  H 0 1 N N N N N N -21.444 -5.230 4.479  -0.285 -0.855 0.901  H4  Y91 36 
Y91 H5  H5  H 0 1 N N N N N N -21.596 -8.045 3.246  0.394  1.201  2.224  H5  Y91 37 
Y91 H6  H6  H 0 1 N N N N N N -21.494 -7.677 5.001  -0.499 2.182  1.038  H6  Y91 38 
Y91 H7  H7  H 0 1 N N N N N N -23.764 -7.130 3.058  -2.551 0.807  1.533  H7  Y91 39 
Y91 H8  H8  H 0 1 N N N N N N -19.662 -3.044 -0.578 4.374  -1.871 0.585  H8  Y91 40 
Y91 H9  H9  H 0 1 N N N N N N -20.751 -2.130 0.521  4.544  -0.516 1.726  H9  Y91 41 
Y91 H10 H10 H 0 1 N N N N N N -21.436 -4.475 -2.494 6.854  -2.293 0.332  H10 Y91 42 
Y91 H11 H11 H 0 1 N N N N N N -20.242 -3.218 -2.963 6.858  -1.220 1.741  H11 Y91 43 
Y91 H12 H12 H 0 1 N N N N N N -21.729 -3.609 -4.820 9.097  -1.344 0.856  H12 Y91 44 
Y91 H13 H13 H 0 1 N N N N N N -22.461 0.267  -3.255 7.616  2.579  0.142  H13 Y91 45 
Y91 H14 H14 H 0 1 N N N N N N -24.980 -5.924 4.851  -2.547 -0.639 3.517  H14 Y91 46 
Y91 H15 H15 H 0 1 N N N N N N -23.495 -5.959 5.861  -1.305 -1.198 2.371  H15 Y91 47 
Y91 H16 H16 H 0 1 N N N N N N -23.502 -5.059 4.307  -0.831 -0.268 3.813  H16 Y91 48 
Y91 H17 H17 H 0 1 N N N N N N -17.486 -7.610 6.106  -3.250 2.037  -1.971 H17 Y91 49 
Y91 S1  S1  S 0 1 N Y N N N N -17.488 -6.085 7.104  -4.736 1.898  -0.082 S1  Y91 50 
Y91 H19 H19 H 0 1 N N N N N N -17.017 -6.364 4.121  -2.979 -0.349 -2.445 H19 Y91 51 
Y91 H20 H20 H 0 1 N N N N N N -17.896 -3.414 3.516  -3.555 -2.695 -2.129 H20 Y91 52 
Y91 H21 H21 H 0 1 N N N N N N -14.099 -3.646 1.907  -5.793 -2.949 1.110  H21 Y91 53 
Y91 H22 H22 H 0 1 N N N N N N -15.559 -4.633 5.128  -5.044 -0.799 -0.245 H22 Y91 54 
Y91 H23 H23 H 0 1 N N N N N N -16.990 -3.840 5.870  -5.373 -0.957 -1.987 H23 Y91 55 
Y91 H24 H24 H 0 1 N N N N N N -16.925 -4.470 1.755  -6.158 -3.071 -1.211 H24 Y91 56 
Y91 H25 H25 H 0 1 N N N N N N -15.643 -5.131 2.826  -4.997 -4.426 -1.417 H25 Y91 57 
Y91 H26 H26 H 0 1 N N N N N N -22.651 -2.872 -1.119 5.780  -0.643 -1.045 H26 Y91 58 
Y91 H27 H27 H 0 1 N N N N N N -21.094 -1.293 -4.552 8.338  0.834  1.724  H27 Y91 59 
Y91 H28 H28 H 0 1 N N N N N N -22.808 -1.364 -5.082 9.529  1.044  0.415  H28 Y91 60 
Y91 H29 H29 H 0 1 N N N N N N -20.595 -0.805 -2.056 5.885  1.337  1.262  H29 Y91 61 
Y91 H30 H30 H 0 1 N N N N N N -21.986 -0.514 -0.958 5.373  1.636  -0.405 H30 Y91 62 
Y91 H31 H31 H 0 1 N N N N N N -24.209 -0.776 -1.695 6.995  1.920  -2.187 H31 Y91 63 
Y91 H32 H32 H 0 1 N N N N N N -24.629 -0.629 -3.435 8.732  1.883  -1.861 H32 Y91 64 
Y91 H33 H33 H 0 1 N N N N N N -25.420 -2.735 -2.981 6.838  -0.454 -2.261 H33 Y91 65 
Y91 H34 H34 H 0 1 N N N N N N -24.159 -3.069 -1.746 8.315  -0.056 -3.106 H34 Y91 66 
Y91 H35 H35 H 0 1 N N N N N N -24.111 -3.460 -4.721 9.724  -0.772 -1.382 H35 Y91 67 
Y91 H36 H36 H 0 1 N N N N N N -23.585 -4.552 -3.394 8.461  -2.005 -1.471 H36 Y91 68 
Y91 H37 H37 H 0 1 N N N N N N -19.340 -5.202 5.563  -2.783 -0.347 0.468  H37 Y91 69 
Y91 H38 H38 H 0 1 N N N N N N -22.341 -5.904 1.900  1.278  0.843  -0.903 H38 Y91 70 
Y91 H39 H39 H 0 1 N N N N N N -15.505 -7.200 7.212  -5.813 0.762  -2.455 H39 Y91 71 
Y91 O1  O6  O 0 1 N Y N N N N ?       ?      ?      -5.825 1.068  0.298  O1  Y91 72 
Y91 O2  O7  O 0 1 N Y N N N N ?       ?      ?      -3.696 2.207  0.836  O2  Y91 73 
Y91 O3  O8  O 0 1 N Y N N N N ?       ?      ?      -5.378 3.243  -0.388 O3  Y91 74 
Y91 H18 H18 H 0 1 N N N N N N -15.374 -3.005 0.817  -5.333 -4.665 0.905  H18 Y91 75 
Y91 H40 H40 H 0 1 N N N N N N -14.672 -1.173 2.518  -3.299 -3.540 1.814  H40 Y91 76 
Y91 H41 H41 H 0 1 N Y N N N N ?       ?      ?      -5.796 3.663  0.376  H41 Y91 77 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y91 C25 C24 SING N N 1  
Y91 C25 C26 SING N N 2  
Y91 C24 C30 SING N N 3  
Y91 C24 C23 SING N N 4  
Y91 C30 C29 SING N N 5  
Y91 C26 C28 SING N N 6  
Y91 C26 C27 SING N N 7  
Y91 C29 C28 SING N N 8  
Y91 C23 C22 SING N N 9  
Y91 C27 C22 SING N N 10 
Y91 C22 C21 SING N N 11 
Y91 C21 O20 SING N N 12 
Y91 O20 C19 SING N N 13 
Y91 C19 N18 SING N N 14 
Y91 C19 O31 DOUB N N 15 
Y91 C04 C05 SING N N 16 
Y91 C04 N03 SING N N 17 
Y91 N18 C13 SING N N 18 
Y91 C05 C06 SING N N 19 
Y91 N03 C02 SING N N 20 
Y91 O32 C12 DOUB N N 21 
Y91 C13 C12 SING N N 22 
Y91 C13 C14 SING N N 23 
Y91 C06 C02 SING N N 24 
Y91 C06 C07 SING N N 25 
Y91 C02 O01 DOUB N N 26 
Y91 C12 N11 SING N N 27 
Y91 C14 C15 SING N N 28 
Y91 C15 C17 SING N N 29 
Y91 C15 C16 SING N N 30 
Y91 N11 C08 SING N N 31 
Y91 C08 C07 SING N N 32 
Y91 C08 C09 SING N N 33 
Y91 C09 O10 SING N N 34 
Y91 C17 H1  SING N N 35 
Y91 C17 H2  SING N N 36 
Y91 C17 H3  SING N N 37 
Y91 C13 H4  SING N N 38 
Y91 C14 H5  SING N N 39 
Y91 C14 H6  SING N N 40 
Y91 C15 H7  SING N N 41 
Y91 C21 H8  SING N N 42 
Y91 C21 H9  SING N N 43 
Y91 C23 H10 SING N N 44 
Y91 C23 H11 SING N N 45 
Y91 C24 H12 SING N N 46 
Y91 C26 H13 SING N N 47 
Y91 C16 H14 SING N N 48 
Y91 C16 H15 SING N N 49 
Y91 C16 H16 SING N N 50 
Y91 C09 H17 SING N N 51 
Y91 C09 S1  SING N N 52 
Y91 C08 H19 SING N N 53 
Y91 C06 H20 SING N N 54 
Y91 C04 H21 SING N N 55 
Y91 C07 H22 SING N N 56 
Y91 C07 H23 SING N N 57 
Y91 C05 H24 SING N N 58 
Y91 C05 H25 SING N N 59 
Y91 C22 H26 SING N N 60 
Y91 C25 H27 SING N N 61 
Y91 C25 H28 SING N N 62 
Y91 C27 H29 SING N N 63 
Y91 C27 H30 SING N N 64 
Y91 C28 H31 SING N N 65 
Y91 C28 H32 SING N N 66 
Y91 C29 H33 SING N N 67 
Y91 C29 H34 SING N N 68 
Y91 C30 H35 SING N N 69 
Y91 C30 H36 SING N N 70 
Y91 N11 H37 SING N N 71 
Y91 N18 H38 SING N N 72 
Y91 O10 H39 SING N N 73 
Y91 S1  O1  DOUB N N 74 
Y91 S1  O2  DOUB N N 75 
Y91 S1  O3  SING N N 76 
Y91 C04 H18 SING N N 77 
Y91 N03 H40 SING N N 78 
Y91 O3  H41 SING N N 79 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y91 InChI            InChI                1.03  "InChI=1S/C24H41N3O8S/c1-14(2)8-19(27-24(31)35-13-17-10-15-4-3-5-16(9-15)11-17)22(29)26-20(23(30)36(32,33)34)12-18-6-7-25-21(18)28/h14-20,23,30H,3-13H2,1-2H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t15-,16+,17+,18-,19-,20-,23-/m0/s1" 
Y91 InChIKey         InChI                1.03  PGYROSRJIVXTOE-UIEASHSYSA-N                                                                                                                                                                                                               
Y91 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]2CCC[C@@H](C2)C1)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O"                                                                                                                                    
Y91 SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CCC[CH](C2)C1)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"                                                                                                                                                
Y91 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2C[C@@H]3CCC[C@@H](C3)C2"                                                                                                                                              
Y91 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CCCC(C3)C2"                                                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           Y91 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-[[(2~{S})-2-[[(1~{R},5~{S})-3-bicyclo[3.3.1]nonanyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y91 "Create component" 2021-02-10 RCSB 
Y91 "Initial release"  2021-02-17 RCSB 
Y91 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Y91 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C09 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
