data_Y61
#

_chem_comp.id                                   Y61
_chem_comp.name                                 "N-[(1R)-1-(3-{5-[(acetylamino)methyl]thiophen-2-yl}phenyl)ethyl]-5-[(azetidin-3-yl)amino]-2-methylbenzamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H30 N4 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-05
_chem_comp.pdbx_modified_date                   2021-02-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       462.607
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y61
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LLZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y61  N03  N1   N  0  1  N  N  N   2.132  10.491  34.088    1.835  -0.854  -0.869  N03  Y61   1  
Y61  C05  C1   C  0  1  Y  N  N   2.058   8.361  35.593    3.985  -1.648  -0.007  C05  Y61   2  
Y61  C06  C2   C  0  1  Y  N  N   0.996   7.479  35.413    4.726  -2.682   0.566  C06  Y61   3  
Y61  C07  C3   C  0  1  N  N  N  -0.325   7.919  34.888    4.101  -4.039   0.760  C07  Y61   4  
Y61  C08  C4   C  0  1  Y  N  N   1.193   6.140  35.728    6.033  -2.463   0.953  C08  Y61   5  
Y61  C09  C5   C  0  1  Y  N  N   2.366   5.640  36.211    6.611  -1.220   0.777  C09  Y61   6  
Y61  C10  C6   C  0  1  Y  N  N   3.474   6.464  36.422    5.881  -0.183   0.207  C10  Y61   7  
Y61  C12  C7   C  0  1  N  N  N   5.953   6.359  37.123    7.858   1.294   0.448  C12  Y61   8  
Y61  C13  C8   C  0  1  N  N  N   7.103   5.286  36.945    8.542   2.466  -0.279  C13  Y61   9  
Y61  C15  C9   C  0  1  N  N  N   6.623   7.081  35.866    7.995   2.137   1.729  C15  Y61  10  
Y61  C16  C10  C  0  1  Y  N  N   3.287   7.847  36.105    4.569  -0.393  -0.186  C16  Y61  11  
Y61  C18  C11  C  0  1  Y  N  N   2.758  12.827  34.582   -0.339   0.187  -1.148  C18  Y61  12  
Y61  C01  C12  C  0  1  N  N  N   2.074  12.155  32.235    0.435  -1.535  -2.756  C01  Y61  13  
Y61  C02  C13  C  0  1  N  N  R   1.902  11.914  33.732    0.452  -1.087  -1.293  C02  Y61  14  
Y61  C04  C14  C  0  1  N  N  N   1.824   9.799  35.265    2.587  -1.882  -0.429  C04  Y61  15  
Y61  N11  N2   N  0  1  N  N  N   4.654   5.833  36.960    6.471   1.072   0.032  N11  Y61  16  
Y61  N14  N3   N  0  1  N  N  N   7.256   5.754  35.493    9.111   2.822   1.040  N14  Y61  17  
Y61  O17  O1   O  0  1  N  N  N   1.200  10.438  36.152    2.117  -3.002  -0.378  O17  Y61  18  
Y61  C19  C15  C  0  1  Y  N  N   4.143  12.764  34.408    0.233   1.398  -1.496  C19  Y61  19  
Y61  C20  C16  C  0  1  Y  N  N   4.972  13.587  35.169   -0.489   2.572  -1.371  C20  Y61  20  
Y61  C21  C17  C  0  1  Y  N  N   4.456  14.476  36.127   -1.785   2.542  -0.900  C21  Y61  21  
Y61  C22  C18  C  0  1  Y  N  N   3.052  14.597  36.358   -2.368   1.323  -0.548  C22  Y61  22  
Y61  C23  C19  C  0  1  Y  N  N   2.495  15.508  37.397   -3.757   1.283  -0.042  C23  Y61  23  
Y61  C24  C20  C  0  1  Y  N  N   3.066  16.166  38.437   -4.558   2.355   0.117  C24  Y61  24  
Y61  C25  C21  C  0  1  Y  N  N   2.200  16.958  39.301   -5.816   2.068   0.605  C25  Y61  25  
Y61  C26  C22  C  0  1  Y  N  N   0.880  16.926  38.968   -6.048   0.774   0.846  C26  Y61  26  
Y61  C27  C23  C  0  1  N  N  N  -0.340  17.609  39.605   -7.339   0.209   1.380  C27  Y61  27  
Y61  N28  N4   N  0  1  N  N  N  -0.704  19.034  39.255   -8.222  -0.131   0.262  N28  Y61  28  
Y61  C29  C24  C  0  1  N  N  N  -1.226  20.033  40.084   -9.441  -0.655   0.501  C29  Y61  29  
Y61  C30  C25  C  0  1  N  N  N  -1.505  19.824  41.514  -10.350  -1.005  -0.649  C30  Y61  30  
Y61  O31  O2   O  0  1  N  N  N  -1.487  21.193  39.646   -9.805  -0.846   1.642  O31  Y61  31  
Y61  S32  S1   S  0  1  Y  N  N   0.747  15.861  37.527   -4.622  -0.171   0.438  S32  Y61  32  
Y61  C33  C26  C  0  1  Y  N  N   2.261  13.724  35.551   -1.635   0.143  -0.675  C33  Y61  33  
Y61  H1   H1   H  0  1  N  N  N   2.575   9.943  33.378    2.210   0.039  -0.910  H1   Y61  34  
Y61  H2   H2   H  0  1  N  N  N  -0.328   7.843  33.791    4.172  -4.608  -0.167  H2   Y61  35  
Y61  H3   H3   H  0  1  N  N  N  -1.116   7.277  35.302    4.625  -4.571   1.554  H3   Y61  36  
Y61  H4   H4   H  0  1  N  N  N  -0.508   8.963  35.184    3.052  -3.920   1.034  H4   Y61  37  
Y61  H5   H5   H  0  1  N  N  N   0.370   5.456  35.582    6.605  -3.264   1.396  H5   Y61  38  
Y61  H6   H6   H  0  1  N  N  N   2.440   4.586  36.435    7.634  -1.054   1.083  H6   Y61  39  
Y61  H7   H7   H  0  1  N  N  N   6.090   6.948  38.042    8.450   0.379   0.459  H7   Y61  40  
Y61  H8   H8   H  0  1  N  N  N   6.773   4.242  37.055    9.288   2.154  -1.010  H8   Y61  41  
Y61  H9   H9   H  0  1  N  N  N   7.988   5.459  37.575    7.845   3.206  -0.672  H9   Y61  42  
Y61  H10  H10  H  0  1  N  N  N   7.343   7.871  36.125    7.138   2.782   1.924  H10  Y61  43  
Y61  H11  H11  H  0  1  N  N  N   5.905   7.467  35.127    8.303   1.562   2.602  H11  Y61  44  
Y61  H12  H12  H  0  1  N  N  N   4.110   8.530  36.260    4.000   0.411  -0.629  H12  Y61  45  
Y61  H13  H13  H  0  1  N  N  N   1.896  13.217  32.011   -0.594  -1.709  -3.071  H13  Y61  46  
Y61  H14  H14  H  0  1  N  N  N   3.097  11.884  31.935    0.880  -0.759  -3.378  H14  Y61  47  
Y61  H15  H15  H  0  1  N  N  N   1.353  11.538  31.679    1.008  -2.457  -2.860  H15  Y61  48  
Y61  H16  H16  H  0  1  N  N  N   0.853  12.144  33.972    0.007  -1.864  -0.670  H16  Y61  49  
Y61  H17  H17  H  0  1  N  N  N   4.385   5.549  37.880    5.962   1.795  -0.366  H17  Y61  50  
Y61  H18  H18  H  0  1  N  N  N   6.729   5.220  34.833    9.074   3.818   1.193  H18  Y61  51  
Y61  H20  H20  H  0  1  N  N  N   4.569  12.081  33.688    1.247   1.427  -1.865  H20  Y61  52  
Y61  H21  H21  H  0  1  N  N  N   6.040  13.540  35.018   -0.036   3.514  -1.643  H21  Y61  53  
Y61  H22  H22  H  0  1  N  N  N   5.138  15.083  36.703   -2.347   3.459  -0.802  H22  Y61  54  
Y61  H23  H23  H  0  1  N  N  N   4.129  16.105  38.619   -4.241   3.360  -0.119  H23  Y61  55  
Y61  H24  H24  H  0  1  N  N  N   2.576  17.526  40.139   -6.558   2.832   0.781  H24  Y61  56  
Y61  H25  H25  H  0  1  N  N  N  -1.213  16.991  39.350   -7.129  -0.688   1.962  H25  Y61  57  
Y61  H26  H26  H  0  1  N  N  N  -0.179  17.585  40.693   -7.824   0.950   2.015  H26  Y61  58  
Y61  H27  H27  H  0  1  N  N  N  -0.551  19.298  38.303   -7.931   0.022  -0.651  H27  Y61  59  
Y61  H28  H28  H  0  1  N  N  N  -1.904  20.752  41.950   -9.854  -0.764  -1.590  H28  Y61  60  
Y61  H29  H29  H  0  1  N  N  N  -2.245  19.018  41.629  -10.578  -2.070  -0.621  H29  Y61  61  
Y61  H30  H30  H  0  1  N  N  N  -0.575  19.546  42.032  -11.274  -0.432  -0.568  H30  Y61  62  
Y61  H31  H31  H  0  1  N  N  N   1.191  13.753  35.695   -2.082  -0.803  -0.409  H31  Y61  63  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y61  C01  C02  SING  N  N   1  
Y61  C02  N03  SING  N  N   2  
Y61  C02  C18  SING  N  N   3  
Y61  N03  C04  SING  N  N   4  
Y61  C19  C18  DOUB  Y  N   5  
Y61  C19  C20  SING  Y  N   6  
Y61  C18  C33  SING  Y  N   7  
Y61  C07  C06  SING  N  N   8  
Y61  C20  C21  DOUB  Y  N   9  
Y61  C04  C05  SING  N  N  10  
Y61  C04  O17  DOUB  N  N  11  
Y61  C06  C05  DOUB  Y  N  12  
Y61  C06  C08  SING  Y  N  13  
Y61  N14  C15  SING  N  N  14  
Y61  N14  C13  SING  N  N  15  
Y61  C33  C22  DOUB  Y  N  16  
Y61  C05  C16  SING  Y  N  17  
Y61  C08  C09  DOUB  Y  N  18  
Y61  C15  C12  SING  N  N  19  
Y61  C16  C10  DOUB  Y  N  20  
Y61  C21  C22  SING  Y  N  21  
Y61  C09  C10  SING  Y  N  22  
Y61  C22  C23  SING  N  N  23  
Y61  C10  N11  SING  N  N  24  
Y61  C13  C12  SING  N  N  25  
Y61  N11  C12  SING  N  N  26  
Y61  C23  S32  SING  Y  N  27  
Y61  C23  C24  DOUB  Y  N  28  
Y61  S32  C26  SING  Y  N  29  
Y61  C24  C25  SING  Y  N  30  
Y61  C26  C25  DOUB  Y  N  31  
Y61  C26  C27  SING  N  N  32  
Y61  N28  C27  SING  N  N  33  
Y61  N28  C29  SING  N  N  34  
Y61  O31  C29  DOUB  N  N  35  
Y61  C29  C30  SING  N  N  36  
Y61  N03  H1   SING  N  N  37  
Y61  C07  H2   SING  N  N  38  
Y61  C07  H3   SING  N  N  39  
Y61  C07  H4   SING  N  N  40  
Y61  C08  H5   SING  N  N  41  
Y61  C09  H6   SING  N  N  42  
Y61  C12  H7   SING  N  N  43  
Y61  C13  H8   SING  N  N  44  
Y61  C13  H9   SING  N  N  45  
Y61  C15  H10  SING  N  N  46  
Y61  C15  H11  SING  N  N  47  
Y61  C16  H12  SING  N  N  48  
Y61  C01  H13  SING  N  N  49  
Y61  C01  H14  SING  N  N  50  
Y61  C01  H15  SING  N  N  51  
Y61  C02  H16  SING  N  N  52  
Y61  N11  H17  SING  N  N  53  
Y61  N14  H18  SING  N  N  54  
Y61  C19  H20  SING  N  N  55  
Y61  C20  H21  SING  N  N  56  
Y61  C21  H22  SING  N  N  57  
Y61  C24  H23  SING  N  N  58  
Y61  C25  H24  SING  N  N  59  
Y61  C27  H25  SING  N  N  60  
Y61  C27  H26  SING  N  N  61  
Y61  N28  H27  SING  N  N  62  
Y61  C30  H28  SING  N  N  63  
Y61  C30  H29  SING  N  N  64  
Y61  C30  H30  SING  N  N  65  
Y61  C33  H31  SING  N  N  66  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y61  SMILES            ACDLabs               12.01  "N(C(c1cc(ccc1C)NC2CNC2)=O)C(c3cc(ccc3)c4sc(cc4)CNC(C)=O)C"  
Y61  InChI             InChI                 1.03   "InChI=1S/C26H30N4O2S/c1-16-7-8-21(30-22-13-27-14-22)12-24(16)26(32)29-17(2)19-5-4-6-20(11-19)25-10-9-23(33-25)15-28-18(3)31/h4-12,17,22,27,30H,13-15H2,1-3H3,(H,28,31)(H,29,32)/t17-/m1/s1"  
Y61  InChIKey          InChI                 1.03   XOTUFJPCITWJHW-QGZVFWFLSA-N  
Y61  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](NC(=O)c1cc(NC2CNC2)ccc1C)c3cccc(c3)c4sc(CNC(C)=O)cc4"  
Y61  SMILES            CACTVS                3.385  "C[CH](NC(=O)c1cc(NC2CNC2)ccc1C)c3cccc(c3)c4sc(CNC(C)=O)cc4"  
Y61  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1ccc(cc1C(=O)N[C@H](C)c2cccc(c2)c3ccc(s3)CNC(=O)C)NC4CNC4"  
Y61  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1ccc(cc1C(=O)NC(C)c2cccc(c2)c3ccc(s3)CNC(=O)C)NC4CNC4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y61  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[(1R)-1-(3-{5-[(acetylamino)methyl]thiophen-2-yl}phenyl)ethyl]-5-[(azetidin-3-yl)amino]-2-methylbenzamide"  
Y61  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}-[(1~{R})-1-[3-[5-(acetamidomethyl)thiophen-2-yl]phenyl]ethyl]-5-(azetidin-3-ylamino)-2-methyl-benzamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y61  "Create component"  2021-02-05  RCSB  
Y61  "Initial release"   2021-02-24  RCSB  
##
