data_XY1
# 
_chem_comp.id                                    XY1 
_chem_comp.name                                  "4-[(E)-[5-(2-azanylethyl)-2-oxidanyl-phenyl]diazenyl]benzoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H15 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "4-[5-(2-Aminoethyl)-2-hydroxyphenylazo]-benzoic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-03-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        285.298 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XY1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4BEO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XY1 C    C29  C 0 1 N N N Y N Y 32.218 -39.524 46.496 -5.782 -0.450 0.080  C29  XY1 1  
XY1 O    O30  O 0 1 N N N Y N Y 32.846 -40.287 47.211 -6.352 -1.514 -0.054 O30  XY1 2  
XY1 C26  C26  C 0 1 Y N N Y N N 32.063 -38.072 46.896 -4.308 -0.389 0.011  C26  XY1 3  
XY1 C25  C25  C 0 1 Y N N Y N N 30.991 -37.374 46.349 -3.570 -1.556 -0.209 C25  XY1 4  
XY1 C24  C24  C 0 1 Y N N Y N N 30.787 -36.037 46.661 -2.201 -1.499 -0.273 C24  XY1 5  
XY1 C27  C27  C 0 1 Y N N N N N 32.928 -37.407 47.775 -3.652 0.836  0.159  C27  XY1 6  
XY1 C28  C28  C 0 1 Y N N N N N 32.721 -36.054 48.088 -2.284 0.894  0.095  C28  XY1 7  
XY1 C23  C23  C 0 1 Y N N Y N N 31.641 -35.373 47.528 -1.544 -0.274 -0.119 C23  XY1 8  
XY1 N21  N21  N 0 1 N N N Y N N 31.351 -34.069 47.758 -0.181 -0.218 -0.183 N21  XY1 9  
XY1 N20  N20  N 0 1 N N N Y N N 30.291 -33.694 47.104 0.426  0.912  -0.041 N20  XY1 10 
XY1 C18  C18  C 0 1 Y N N Y N N 29.711 -32.469 47.084 1.786  0.969  -0.104 C18  XY1 11 
XY1 C17  C17  C 0 1 Y N N N N N 30.180 -31.388 47.808 2.450  2.196  0.049  C17  XY1 12 
XY1 O22  O22  O 0 1 N N N N N N 31.291 -31.503 48.592 1.741  3.333  0.262  O22  XY1 13 
XY1 C16  C16  C 0 1 Y N N N N N 29.506 -30.171 47.729 3.833  2.241  -0.016 C16  XY1 14 
XY1 C15  C15  C 0 1 Y N N N N N 28.376 -30.038 46.930 4.555  1.082  -0.232 C15  XY1 15 
XY1 C19  C19  C 0 1 Y N N Y N N 28.586 -32.336 46.289 2.529  -0.197 -0.317 C19  XY1 16 
XY1 C9   C9   C 0 1 Y N N Y N N 27.923 -31.127 46.203 3.904  -0.131 -0.385 C9   XY1 17 
XY1 C14  C14  C 0 1 N N N Y N N 26.684 -31.035 45.342 4.704  -1.387 -0.621 C14  XY1 18 
XY1 C12  C12  C 0 1 N N N Y N N 26.886 -30.307 44.019 5.050  -2.031 0.723  C12  XY1 19 
XY1 N    N3   N 0 1 N N N Y Y N 25.673 -30.664 43.295 5.829  -3.254 0.494  N3   XY1 20 
XY1 OXT  OXT  O 0 1 N Y N Y N Y 33.188 -39.889 45.149 -6.494 0.675  0.286  OXT  XY1 21 
XY1 HXT  HXT  H 0 1 N Y N Y N Y 33.849 -40.525 45.397 -7.456 0.586  0.320  HXT  XY1 22 
XY1 H25  H25  H 0 1 N N N Y N N 30.312 -37.877 45.676 -4.078 -2.501 -0.327 H25  XY1 23 
XY1 H27  H27  H 0 1 N N N N N N 33.759 -37.938 48.215 -4.223 1.738  0.325  H27  XY1 24 
XY1 H24  H24  H 0 1 N N N Y N N 29.953 -35.508 46.223 -1.631 -2.401 -0.442 H24  XY1 25 
XY1 H28  H28  H 0 1 N N N N N N 33.395 -35.543 48.759 -1.777 1.840  0.210  H28  XY1 26 
XY1 H19  H19  H 0 1 N N N Y N N 28.223 -33.186 45.730 2.027  -1.146 -0.432 H19  XY1 27 
XY1 H22  H22  H 0 1 N N N N N N 31.469 -30.671 49.014 1.581  3.529  1.196  H22  XY1 28 
XY1 H16  H16  H 0 1 N N N N N N 29.865 -29.323 48.294 4.348  3.183  0.101  H16  XY1 29 
XY1 H15  H15  H 0 1 N N N N N N 27.855 -29.093 46.876 5.633  1.123  -0.283 H15  XY1 30 
XY1 H141 H141 H 0 0 N N N Y N N 26.341 -32.057 45.123 4.117  -2.084 -1.218 H141 XY1 31 
XY1 H142 H142 H 0 0 N N N Y N N 25.908 -30.503 45.912 5.623  -1.138 -1.151 H142 XY1 32 
XY1 H121 H121 H 0 0 N N N Y N N 26.959 -29.219 44.167 5.636  -1.333 1.321  H121 XY1 33 
XY1 H122 H122 H 0 0 N N N Y N N 27.785 -30.667 43.497 4.131  -2.280 1.254  H122 XY1 34 
XY1 H    H31N H 0 0 N N N Y Y N 25.686 -30.238 42.391 6.655  -3.060 -0.053 H31N XY1 35 
XY1 H2   H32N H 0 0 N Y N Y Y N 25.625 -31.658 43.194 6.070  -3.699 1.367  H32N XY1 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XY1 C   O    DOUB N N 1  
XY1 C   C26  SING N N 2  
XY1 C   OXT  SING N N 3  
XY1 C26 C25  SING Y N 4  
XY1 C26 C27  DOUB Y N 5  
XY1 C25 C24  DOUB Y N 6  
XY1 C24 C23  SING Y N 7  
XY1 C27 C28  SING Y N 8  
XY1 C28 C23  DOUB Y N 9  
XY1 C23 N21  SING N N 10 
XY1 N21 N20  DOUB N N 11 
XY1 N20 C18  SING N N 12 
XY1 C18 C17  SING Y N 13 
XY1 C18 C19  DOUB Y N 14 
XY1 C17 O22  SING N N 15 
XY1 C17 C16  DOUB Y N 16 
XY1 C16 C15  SING Y N 17 
XY1 C15 C9   DOUB Y N 18 
XY1 C19 C9   SING Y N 19 
XY1 C9  C14  SING N N 20 
XY1 C14 C12  SING N N 21 
XY1 C12 N    SING N N 22 
XY1 OXT HXT  SING N N 23 
XY1 C25 H25  SING N N 24 
XY1 C27 H27  SING N N 25 
XY1 C24 H24  SING N N 26 
XY1 C28 H28  SING N N 27 
XY1 C19 H19  SING N N 28 
XY1 O22 H22  SING N N 29 
XY1 C16 H16  SING N N 30 
XY1 C15 H15  SING N N 31 
XY1 C14 H141 SING N N 32 
XY1 C14 H142 SING N N 33 
XY1 C12 H121 SING N N 34 
XY1 C12 H122 SING N N 35 
XY1 N   H    SING N N 36 
XY1 N   H2   SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XY1 SMILES           ACDLabs              12.01 "O=C(O)c2ccc(/N=N/c1cc(ccc1O)CCN)cc2"                                                                                    
XY1 InChI            InChI                1.03  "InChI=1S/C15H15N3O3/c16-8-7-10-1-6-14(19)13(9-10)18-17-12-4-2-11(3-5-12)15(20)21/h1-6,9,19H,7-8,16H2,(H,20,21)/b18-17+" 
XY1 InChIKey         InChI                1.03  DJIUQBSMFISUJY-ISLYRVAYSA-N                                                                                              
XY1 SMILES_CANONICAL CACTVS               3.385 "NCCc1ccc(O)c(c1)N=Nc2ccc(cc2)C(O)=O"                                                                                    
XY1 SMILES           CACTVS               3.385 "NCCc1ccc(O)c(c1)N=Nc2ccc(cc2)C(O)=O"                                                                                    
XY1 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1C(=O)O)/N=N/c2cc(ccc2O)CCN"                                                                                    
XY1 SMILES           "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1C(=O)O)N=Nc2cc(ccc2O)CCN"                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XY1 "SYSTEMATIC NAME" ACDLabs              12.01 "4-{(E)-[5-(2-aminoethyl)-2-hydroxyphenyl]diazenyl}benzoic acid"    
XY1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "4-[(E)-[5-(2-azanylethyl)-2-oxidanyl-phenyl]diazenyl]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XY1 "Create component"  2013-03-12 EBI  
XY1 "Modify synonyms"   2013-03-15 EBI  
XY1 "Initial release"   2014-03-26 RCSB 
XY1 "Modify descriptor" 2014-09-05 RCSB 
XY1 "Modify synonyms"   2020-06-05 PDBE 
XY1 "Modify backbone"   2023-11-03 PDBE 
XY1 "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      XY1 
_pdbx_chem_comp_synonyms.name         "4-[5-(2-Aminoethyl)-2-hydroxyphenylazo]-benzoic acid" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XY1 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
