data_XB1
#

_chem_comp.id                                   XB1
_chem_comp.name                                 "N-{3-[(1,3-dimethyl-2,6-dioxo-2,3,6,9-tetrahydro-1H-purin-8-yl)sulfanyl]propyl}-N'-[2-(morpholin-4-yl)ethyl]thiourea"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H27 N7 O3 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-08
_chem_comp.pdbx_modified_date                   2021-02-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       441.571
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XB1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KXB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XB1  C10  C1   C  0  1  N  N  N  35.450  -36.209   7.814   1.103   0.481   0.085  C10  XB1   1  
XB1  C15  C2   C  0  1  N  N  N  39.070  -39.736   5.199   7.207   0.857   0.185  C15  XB1   2  
XB1  C17  C3   C  0  1  N  N  N  40.647  -38.138   4.392   8.527  -0.841  -0.928  C17  XB1   3  
XB1  C20  C4   C  0  1  N  N  N  39.630  -38.350   1.747  10.816  -0.133   0.620  C20  XB1   4  
XB1  C21  C5   C  0  1  N  N  N  39.217  -39.331   2.868   9.611   0.802   0.479  C21  XB1   5  
XB1  C26  C6   C  0  1  N  N  N  34.618  -29.849   8.481  -8.134  -0.630  -0.032  C26  XB1   6  
XB1  C28  C7   C  0  1  N  N  N  34.953  -28.628  10.549  -8.097  -3.052   0.137  C28  XB1   7  
XB1  C02  C8   C  0  1  N  N  N  33.911  -30.926  10.540  -6.062  -1.719   0.089  C02  XB1   8  
XB1  C03  C9   C  0  1  Y  N  N  33.489  -32.001   9.801  -5.401  -0.417   0.011  C03  XB1   9  
XB1  C04  C10  C  0  1  Y  N  N  33.637  -32.015   8.329  -6.192   0.719  -0.085  C04  XB1  10  
XB1  C06  C11  C  0  1  Y  N  N  32.720  -33.883   8.977  -4.063   1.293  -0.080  C06  XB1  11  
XB1  C08  C12  C  0  1  N  N  N  33.350  -36.774   9.394  -1.348   0.960  -0.000  C08  XB1  12  
XB1  C09  C13  C  0  1  N  N  N  34.833  -36.284   9.273   0.049   1.585  -0.015  C09  XB1  13  
XB1  C12  C14  C  0  1  N  N  N  36.098  -38.533   6.928   3.532   0.293   0.148  C12  XB1  14  
XB1  C14  C15  C  0  1  N  N  N  37.567  -39.875   5.487   5.948  -0.012   0.220  C14  XB1  15  
XB1  C18  C16  C  0  1  N  N  N  40.994  -37.117   3.292   9.741  -1.759  -0.773  C18  XB1  16  
XB1  C25  C17  C  0  1  N  N  N  34.383  -30.870   6.226  -8.405   1.777  -0.205  C25  XB1  17  
XB1  N05  N1   N  0  1  Y  N  N  33.170  -33.175   7.789  -5.340   1.782  -0.141  N05  XB1  18  
XB1  N11  N2   N  0  1  N  N  N  35.152  -37.370   6.923   2.440   1.080   0.070  N11  XB1  19  
XB1  N13  N3   N  0  1  N  N  N  37.003  -38.541   5.795   4.762   0.844   0.135  N13  XB1  20  
XB1  N16  N4   N  0  1  N  N  N  39.273  -38.686   4.213   8.396  -0.000   0.271  N16  XB1  21  
XB1  N23  N5   N  0  1  Y  N  N  32.897  -33.256  10.141  -4.103  -0.013   0.010  N23  XB1  22  
XB1  N24  N6   N  0  1  N  N  N  34.211  -30.897   7.673  -7.562   0.584  -0.104  N24  XB1  23  
XB1  N27  N7   N  0  1  N  N  N  34.493  -29.807   9.868  -7.412  -1.759   0.062  N27  XB1  24  
XB1  O01  O1   O  0  1  N  N  N  33.829  -30.783  11.915  -5.410  -2.744   0.174  O01  XB1  25  
XB1  O19  O2   O  0  1  N  N  N  40.018  -37.077   2.259  10.907  -0.964  -0.541  O19  XB1  26  
XB1  O29  O3   O  0  1  N  N  N  35.146  -28.834   7.904  -9.348  -0.709  -0.047  O29  XB1  27  
XB1  S07  S1   S  0  1  N  N  N  32.026  -35.533   8.819  -2.595   2.267  -0.118  S07  XB1  28  
XB1  S22  S2   S  0  1  N  N  N  35.071  -40.174   6.768   3.355  -1.406   0.264  S22  XB1  29  
XB1  H1   H1   H  0  1  N  N  N  36.543  -36.131   7.913   0.963  -0.073   1.013  H1   XB1  30  
XB1  H2   H2   H  0  1  N  N  N  35.060  -35.302   7.329   1.000  -0.197  -0.762  H2   XB1  31  
XB1  H3   H3   H  0  1  N  N  N  39.459  -40.688   4.808   7.232   1.423  -0.746  H3   XB1  32  
XB1  H4   H4   H  0  1  N  N  N  39.600  -39.476   6.127   7.195   1.548   1.029  H4   XB1  33  
XB1  H5   H5   H  0  1  N  N  N  41.370  -38.966   4.353   8.660  -0.207  -1.805  H5   XB1  34  
XB1  H6   H6   H  0  1  N  N  N  40.710  -37.643   5.372   7.627  -1.444  -1.049  H6   XB1  35  
XB1  H7   H7   H  0  1  N  N  N  38.778  -38.212   1.065  11.727   0.458   0.717  H7   XB1  36  
XB1  H8   H8   H  0  1  N  N  N  40.477  -38.782   1.193  10.691  -0.757   1.505  H8   XB1  37  
XB1  H9   H9   H  0  1  N  N  N  38.189  -39.675   2.680   9.503   1.398   1.385  H9   XB1  38  
XB1  H10  H10  H  0  1  N  N  N  39.900  -40.193   2.857   9.761   1.463  -0.375  H10  XB1  39  
XB1  H11  H11  H  0  1  N  N  N  34.790  -28.742  11.631  -8.245  -3.443  -0.869  H11  XB1  40  
XB1  H12  H12  H  0  1  N  N  N  36.026  -28.487  10.353  -7.492  -3.751   0.714  H12  XB1  41  
XB1  H13  H13  H  0  1  N  N  N  34.395  -27.753  10.184  -9.065  -2.922   0.623  H13  XB1  42  
XB1  H14  H14  H  0  1  N  N  N  33.157  -37.010  10.451  -1.451   0.282  -0.847  H14  XB1  43  
XB1  H15  H15  H  0  1  N  N  N  33.244  -37.687   8.789  -1.488   0.407   0.928  H15  XB1  44  
XB1  H16  H16  H  0  1  N  N  N  35.458  -36.970   9.863   0.152   2.264   0.832  H16  XB1  45  
XB1  H17  H17  H  0  1  N  N  N  34.886  -35.275   9.708   0.189   2.139  -0.943  H17  XB1  46  
XB1  H19  H19  H  0  1  N  N  N  37.061  -40.293   4.605   5.959  -0.702  -0.623  H19  XB1  47  
XB1  H20  H20  H  0  1  N  N  N  37.418  -40.545   6.347   5.923  -0.577   1.152  H20  XB1  48  
XB1  H21  H21  H  0  1  N  N  N  41.964  -37.390   2.851   9.585  -2.430   0.072  H21  XB1  49  
XB1  H22  H22  H  0  1  N  N  N  41.067  -36.118   3.748   9.874  -2.345  -1.683  H22  XB1  50  
XB1  H23  H23  H  0  1  N  N  N  34.844  -29.916   5.929  -8.593   2.002  -1.255  H23  XB1  51  
XB1  H24  H24  H  0  1  N  N  N  35.033  -31.703   5.919  -9.353   1.597   0.303  H24  XB1  52  
XB1  H25  H25  H  0  1  N  N  N  33.402  -30.971   5.738  -7.898   2.622   0.262  H25  XB1  53  
XB1  H26  H26  H  0  1  N  N  N  33.144  -33.463   6.832  -5.593   2.716  -0.212  H26  XB1  54  
XB1  H27  H27  H  0  1  N  N  N  34.341  -37.372   6.337   2.540   2.042   0.005  H27  XB1  55  
XB1  H29  H29  H  0  1  N  N  N  37.226  -37.720   5.269   4.861   1.806   0.070  H29  XB1  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XB1  C20  O19  SING  N  N   1  
XB1  C20  C21  SING  N  N   2  
XB1  O19  C18  SING  N  N   3  
XB1  C21  N16  SING  N  N   4  
XB1  C18  C17  SING  N  N   5  
XB1  N16  C17  SING  N  N   6  
XB1  N16  C15  SING  N  N   7  
XB1  C15  C14  SING  N  N   8  
XB1  C14  N13  SING  N  N   9  
XB1  N13  C12  SING  N  N  10  
XB1  C25  N24  SING  N  N  11  
XB1  S22  C12  DOUB  N  N  12  
XB1  N11  C12  SING  N  N  13  
XB1  N11  C10  SING  N  N  14  
XB1  N24  C04  SING  N  N  15  
XB1  N24  C26  SING  N  N  16  
XB1  N05  C04  SING  Y  N  17  
XB1  N05  C06  SING  Y  N  18  
XB1  C10  C09  SING  N  N  19  
XB1  O29  C26  DOUB  N  N  20  
XB1  C04  C03  DOUB  Y  N  21  
XB1  C26  N27  SING  N  N  22  
XB1  S07  C06  SING  N  N  23  
XB1  S07  C08  SING  N  N  24  
XB1  C06  N23  DOUB  Y  N  25  
XB1  C09  C08  SING  N  N  26  
XB1  C03  N23  SING  Y  N  27  
XB1  C03  C02  SING  N  N  28  
XB1  N27  C02  SING  N  N  29  
XB1  N27  C28  SING  N  N  30  
XB1  C02  O01  DOUB  N  N  31  
XB1  C10  H1   SING  N  N  32  
XB1  C10  H2   SING  N  N  33  
XB1  C15  H3   SING  N  N  34  
XB1  C15  H4   SING  N  N  35  
XB1  C17  H5   SING  N  N  36  
XB1  C17  H6   SING  N  N  37  
XB1  C20  H7   SING  N  N  38  
XB1  C20  H8   SING  N  N  39  
XB1  C21  H9   SING  N  N  40  
XB1  C21  H10  SING  N  N  41  
XB1  C28  H11  SING  N  N  42  
XB1  C28  H12  SING  N  N  43  
XB1  C28  H13  SING  N  N  44  
XB1  C08  H14  SING  N  N  45  
XB1  C08  H15  SING  N  N  46  
XB1  C09  H16  SING  N  N  47  
XB1  C09  H17  SING  N  N  48  
XB1  C14  H19  SING  N  N  49  
XB1  C14  H20  SING  N  N  50  
XB1  C18  H21  SING  N  N  51  
XB1  C18  H22  SING  N  N  52  
XB1  C25  H23  SING  N  N  53  
XB1  C25  H24  SING  N  N  54  
XB1  C25  H25  SING  N  N  55  
XB1  N05  H26  SING  N  N  56  
XB1  N11  H27  SING  N  N  57  
XB1  N13  H29  SING  N  N  58  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XB1  SMILES            ACDLabs               12.01  "C(CCSc2nc1C(=O)N(C(N(c1n2)C)=O)C)NC(NCCN3CCOCC3)=S"  
XB1  InChI             InChI                 1.03   "InChI=1S/C17H27N7O3S2/c1-22-13-12(14(25)23(2)17(22)26)20-16(21-13)29-11-3-4-18-15(28)19-5-6-24-7-9-27-10-8-24/h3-11H2,1-2H3,(H,20,21)(H2,18,19,28)"  
XB1  InChIKey          InChI                 1.03   DFOUYIHNRZAXAX-UHFFFAOYSA-N  
XB1  SMILES_CANONICAL  CACTVS                3.385  "CN1C(=O)N(C)c2[nH]c(SCCCNC(=S)NCCN3CCOCC3)nc2C1=O"  
XB1  SMILES            CACTVS                3.385  "CN1C(=O)N(C)c2[nH]c(SCCCNC(=S)NCCN3CCOCC3)nc2C1=O"  
XB1  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN1c2c(nc([nH]2)SCCCNC(=S)NCCN3CCOCC3)C(=O)N(C1=O)C"  
XB1  SMILES            "OpenEye OEToolkits"  2.0.7  "CN1c2c(nc([nH]2)SCCCNC(=S)NCCN3CCOCC3)C(=O)N(C1=O)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XB1  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-{3-[(1,3-dimethyl-2,6-dioxo-2,3,6,9-tetrahydro-1H-purin-8-yl)sulfanyl]propyl}-N'-[2-(morpholin-4-yl)ethyl]thiourea"  
XB1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "1-[3-[[1,3-dimethyl-2,6-bis(oxidanylidene)-9~{H}-purin-8-yl]sulfanyl]propyl]-3-(2-morpholin-4-ylethyl)thiourea"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XB1  "Create component"  2020-12-08  RCSB  
XB1  "Initial release"   2021-02-17  RCSB  
##
