data_WK1
#

_chem_comp.id                                   WK1
_chem_comp.name                                 "(2S)-3-[(2S,4E)-4-[[(1R,2S,4aR,6S,8R,8aS)-2-[(E)-but-2-en-2-yl]-6,8-dimethyl-1,2,4a,5,6,7,8,8a-octahydronaphthalen-1-yl]-oxidanyl-methylidene]-3,5-bis(oxidanylidene)pyrrolidin-2-yl]-2-methyl-2-oxidanyl-propanoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H35 N O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-07-03
_chem_comp.pdbx_modified_date                   2020-06-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       445.549
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    WK1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6KBC
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WK1  O     O1   O  0  1  N  N  N  -38.133   -2.835  -10.868   5.844   1.042  -0.932  O     WK1   1  
WK1  C17   C1   C  0  1  N  N  N  -38.208   -3.645   -9.953   5.998   0.190  -0.090  C17   WK1   2  
WK1  O1    O2   O  0  1  N  N  N  -39.158   -3.579   -9.051   6.937   0.344   0.857  O1    WK1   3  
WK1  C19   C2   C  0  1  N  N  S  -37.231   -4.756   -9.833   5.133  -1.044  -0.099  C19   WK1   4  
WK1  O2    O3   O  0  1  N  N  N  -37.488   -5.528   -8.658   4.876  -1.456   1.245  O2    WK1   5  
WK1  C18   C3   C  0  1  N  N  N  -35.837   -4.147   -9.675   5.855  -2.168  -0.846  C18   WK1   6  
WK1  C20   C4   C  0  1  N  N  N  -37.520   -5.617  -11.062   3.809  -0.734  -0.800  C20   WK1   7  
WK1  C22   C5   C  0  1  N  N  S  -36.400   -6.599  -11.248   3.058   0.344  -0.016  C22   WK1   8  
WK1  N     N1   N  0  1  N  N  N  -36.478   -7.442  -12.454   2.565  -0.206   1.248  N100  WK1   9  
WK1  C21   C6   C  0  1  N  N  N  -36.146   -8.716  -12.190   1.227  -0.128   1.296  C21   WK1  10  
WK1  O5    O4   O  0  1  N  N  N  -36.086   -9.597  -13.120   0.546  -0.510   2.229  O5    WK1  11  
WK1  C23   C7   C  0  1  N  N  N  -36.142   -7.623  -10.219   1.841   0.796  -0.793  C23   WK1  12  
WK1  O4    O5   O  0  1  N  N  N  -35.994   -7.415   -8.955   1.816   1.308  -1.893  O4    WK1  13  
WK1  C24   C8   C  0  1  N  N  N  -35.912   -8.953  -10.733   0.697   0.481   0.069  C24   WK1  14  
WK1  C16   C9   C  0  1  N  N  N  -35.565  -10.144   -9.928  -0.631   0.713  -0.219  C16   WK1  15  
WK1  O3    O6   O  0  1  N  N  N  -35.403   -9.978   -8.620  -0.975   1.280  -1.385  O3    WK1  16  
WK1  C9    C10  C  0  1  N  N  R  -35.249  -11.393  -10.672  -1.696   0.331   0.776  C9    WK1  17  
WK1  C8    C11  C  0  1  N  N  S  -33.713  -11.137  -11.023  -2.351   1.594   1.344  C8    WK1  18  
WK1  C12   C12  C  0  1  N  N  N  -33.221   -9.715  -11.397  -2.665   2.540   0.213  C12   WK1  19  
WK1  C13   C13  C  0  1  N  N  N  -33.121   -9.355  -12.709  -3.755   2.375  -0.494  C13   WK1  20  
WK1  C90   C14  C  0  1  N  N  N  -32.649   -7.985  -13.158  -4.054   3.301  -1.645  C90   WK1  21  
WK1  C14   C15  C  0  1  N  N  N  -32.826   -8.687  -10.326  -1.726   3.675  -0.102  C14   WK1  22  
WK1  C7    C16  C  0  1  N  N  N  -32.822  -11.577   -9.870  -3.617   1.257   2.072  C7    WK1  23  
WK1  C6    C17  C  0  1  N  N  N  -33.067  -12.741   -9.309  -4.238   0.121   1.986  C6    WK1  24  
WK1  C3    C18  C  0  1  N  N  R  -34.196  -13.548   -9.871  -3.744  -1.016   1.148  C3    WK1  25  
WK1  C4    C19  C  0  1  N  N  S  -35.477  -12.721   -9.924  -2.778  -0.496   0.081  C4    WK1  26  
WK1  C5    C20  C  0  1  N  N  R  -36.587  -13.570  -10.544  -2.174  -1.684  -0.664  C5    WK1  27  
WK1  C11   C21  C  0  1  N  N  N  -37.924  -12.839  -10.509  -1.187  -1.180  -1.718  C11   WK1  28  
WK1  C2    C22  C  0  1  N  N  N  -34.380  -14.800   -9.056  -4.888  -1.762   0.466  C2    WK1  29  
WK1  C1    C23  C  0  1  N  N  S  -35.315  -15.653   -9.864  -4.309  -2.952  -0.306  C1    WK1  30  
WK1  C10   C24  C  0  1  N  N  N  -35.354  -17.047   -9.279  -5.444  -3.701  -1.009  C10   WK1  31  
WK1  C     C25  C  0  1  N  N  N  -36.665  -14.947   -9.874  -3.303  -2.462  -1.348  C     WK1  32  
WK1  H16   H1   H  0  1  N  N  N  -39.723   -2.839   -9.239   7.464   1.154   0.825  H16   WK1  33  
WK1  H23   H2   H  0  1  N  N  N  -36.947   -6.309   -8.667   4.655  -0.728   1.844  H23   WK1  34  
WK1  H26   H3   H  0  1  N  N  N  -35.796   -3.561   -8.745   6.835  -2.330  -0.399  H26   WK1  35  
WK1  H25   H4   H  0  1  N  N  N  -35.088   -4.952   -9.635   5.268  -3.084  -0.779  H25   WK1  36  
WK1  H24   H5   H  0  1  N  N  N  -35.624   -3.491  -10.532   5.975  -1.889  -1.893  H24   WK1  37  
WK1  H27   H6   H  0  1  N  N  N  -37.598   -4.975  -11.952   4.008  -0.377  -1.810  H27   WK1  38  
WK1  H28   H7   H  0  1  N  N  N  -38.466   -6.160  -10.917   3.203  -1.638  -0.848  H28   WK1  39  
WK1  H221  H8   H  0  0  N  N  N  -35.479   -6.004  -11.338   3.715   1.192   0.175  H221  WK1  40  
WK1  H29   H9   H  0  1  N  N  N  -36.745   -7.107  -13.357   3.126  -0.575   1.949  H29   WK1  41  
WK1  HO3   H12  H  0  1  N  N  N  -35.561   -9.069   -8.394  -1.920   1.352  -1.576  HO3   WK1  42  
WK1  H91   H13  H  0  1  N  N  N  -35.817  -11.414  -11.614  -1.252  -0.250   1.585  H91   WK1  43  
WK1  HF3   H14  H  0  1  N  N  N  -33.480  -11.788  -11.878  -1.658   2.078   2.033  HF3   WK1  44  
WK1  H150  H15  H  0  0  N  N  N  -33.390  -10.079  -13.463  -4.440   1.575  -0.253  H150  WK1  45  
WK1  H902  H16  H  0  0  N  N  N  -32.654   -7.937  -14.257  -4.995   3.010  -2.111  H902  WK1  46  
WK1  H90   H17  H  0  1  N  N  N  -33.322   -7.215  -12.754  -4.131   4.324  -1.277  H90   WK1  47  
WK1  H901  H18  H  0  0  N  N  N  -31.628   -7.810  -12.788  -3.250   3.239  -2.379  H901  WK1  48  
WK1  H18   H19  H  0  1  N  N  N  -32.962   -9.127   -9.327  -1.042   3.371  -0.894  H18   WK1  49  
WK1  H10   H20  H  0  1  N  N  N  -31.772   -8.403  -10.461  -2.301   4.541  -0.431  H10   WK1  50  
WK1  H19   H21  H  0  1  N  N  N  -33.461   -7.794  -10.423  -1.157   3.935   0.790  H19   WK1  51  
WK1  H8    H22  H  0  1  N  N  N  -32.013  -10.952   -9.523  -4.043   2.014   2.714  H8    WK1  52  
WK1  H7    H23  H  0  1  N  N  N  -32.478  -13.100   -8.478  -5.153  -0.010   2.545  H7    WK1  53  
WK1  HF1   H24  H  0  1  N  N  N  -33.936  -13.840  -10.899  -3.201  -1.714   1.787  HF1   WK1  54  
WK1  H41   H25  H  0  1  N  N  N  -35.770  -12.480   -8.891  -3.321   0.135  -0.623  H41   WK1  55  
WK1  HH4   H26  H  0  1  N  N  N  -36.327  -13.733  -11.600  -1.656  -2.333   0.042  HH4   WK1  56  
WK1  H13   H27  H  0  1  N  N  N  -38.701  -13.473  -10.961  -0.262  -0.872  -1.232  H13   WK1  57  
WK1  H12   H28  H  0  1  N  N  N  -38.193  -12.617   -9.466  -0.975  -1.979  -2.429  H12   WK1  58  
WK1  H11   H29  H  0  1  N  N  N  -37.843  -11.899  -11.075  -1.621  -0.331  -2.246  H11   WK1  59  
WK1  H5    H30  H  0  1  N  N  N  -33.417  -15.312   -8.910  -5.590  -2.121   1.219  H5    WK1  60  
WK1  H6    H31  H  0  1  N  N  N  -34.821  -14.563   -8.077  -5.402  -1.091  -0.223  H6    WK1  61  
WK1  HF2   H32  H  0  1  N  N  N  -34.941  -15.712  -10.897  -3.808  -3.625   0.389  HF2   WK1  62  
WK1  H17   H33  H  0  1  N  N  N  -34.346  -17.486   -9.308  -5.949  -3.028  -1.702  H17   WK1  63  
WK1  H15   H34  H  0  1  N  N  N  -35.702  -16.998   -8.237  -5.034  -4.548  -1.559  H15   WK1  64  
WK1  H14   H35  H  0  1  N  N  N  -36.043  -17.672   -9.866  -6.156  -4.060  -0.266  H14   WK1  65  
WK1  H4    H36  H  0  1  N  N  N  -37.006  -14.818   -8.836  -3.810  -1.812  -2.062  H4    WK1  66  
WK1  H3    H37  H  0  1  N  N  N  -37.387  -15.569  -10.423  -2.884  -3.319  -1.876  H3    WK1  67  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WK1  C90  C13   SING  N  N   1  
WK1  O5   C21   DOUB  N  N   2  
WK1  C13  C12   DOUB  N  E   3  
WK1  N    C21   SING  N  N   4  
WK1  N    C22   SING  N  N   5  
WK1  C21  C24   SING  N  N   6  
WK1  C12  C8    SING  N  N   7  
WK1  C12  C14   SING  N  N   8  
WK1  C22  C20   SING  N  N   9  
WK1  C22  C23   SING  N  N  10  
WK1  C20  C19   SING  N  N  11  
WK1  C8   C9    SING  N  N  12  
WK1  C8   C7    SING  N  N  13  
WK1  O    C17   DOUB  N  N  14  
WK1  C24  C23   SING  N  N  15  
WK1  C24  C16   DOUB  N  E  16  
WK1  C9   C16   SING  N  N  17  
WK1  C9   C4    SING  N  N  18  
WK1  C5   C11   SING  N  N  19  
WK1  C5   C4    SING  N  N  20  
WK1  C5   C     SING  N  N  21  
WK1  C23  O4    DOUB  N  N  22  
WK1  C17  C19   SING  N  N  23  
WK1  C17  O1    SING  N  N  24  
WK1  C16  O3    SING  N  N  25  
WK1  C4   C3    SING  N  N  26  
WK1  C    C1    SING  N  N  27  
WK1  C3   C6    SING  N  N  28  
WK1  C3   C2    SING  N  N  29  
WK1  C7   C6    DOUB  N  N  30  
WK1  C1   C10   SING  N  N  31  
WK1  C1   C2    SING  N  N  32  
WK1  C19  C18   SING  N  N  33  
WK1  C19  O2    SING  N  N  34  
WK1  O1   H16   SING  N  N  35  
WK1  O2   H23   SING  N  N  36  
WK1  C18  H26   SING  N  N  37  
WK1  C18  H25   SING  N  N  38  
WK1  C18  H24   SING  N  N  39  
WK1  C20  H27   SING  N  N  40  
WK1  C20  H28   SING  N  N  41  
WK1  C22  H221  SING  N  N  42  
WK1  N    H29   SING  N  N  43  
WK1  O3   HO3   SING  N  N  44  
WK1  C9   H91   SING  N  N  45  
WK1  C8   HF3   SING  N  N  46  
WK1  C13  H150  SING  N  N  47  
WK1  C90  H902  SING  N  N  48  
WK1  C90  H90   SING  N  N  49  
WK1  C90  H901  SING  N  N  50  
WK1  C14  H18   SING  N  N  51  
WK1  C14  H10   SING  N  N  52  
WK1  C14  H19   SING  N  N  53  
WK1  C7   H8    SING  N  N  54  
WK1  C6   H7    SING  N  N  55  
WK1  C3   HF1   SING  N  N  56  
WK1  C4   H41   SING  N  N  57  
WK1  C5   HH4   SING  N  N  58  
WK1  C11  H13   SING  N  N  59  
WK1  C11  H12   SING  N  N  60  
WK1  C11  H11   SING  N  N  61  
WK1  C2   H5    SING  N  N  62  
WK1  C2   H6    SING  N  N  63  
WK1  C1   HF2   SING  N  N  64  
WK1  C10  H17   SING  N  N  65  
WK1  C10  H15   SING  N  N  66  
WK1  C10  H14   SING  N  N  67  
WK1  C    H4    SING  N  N  68  
WK1  C    H3    SING  N  N  69  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WK1  InChI             InChI                 1.03   "InChI=1S/C25H35NO6/c1-6-13(3)16-8-7-15-10-12(2)9-14(4)18(15)19(16)22(28)20-21(27)17(26-23(20)29)11-25(5,32)24(30)31/h6-8,12,14-19,28,32H,9-11H2,1-5H3,(H,26,29)(H,30,31)/b13-6+,22-20+/t12-,14+,15-,16+,17-,18-,19-,25-/m0/s1"  
WK1  InChIKey          InChI                 1.03   AVZATKWNGXCSDN-RQCLIRHHSA-N  
WK1  SMILES_CANONICAL  CACTVS                3.385  "C\C=C(C)\[C@H]1C=C[C@H]2C[C@@H](C)C[C@@H](C)[C@@H]2[C@H]1C(\O)=C3/C(=O)N[C@@H](C[C@](C)(O)C(O)=O)C3=O"  
WK1  SMILES            CACTVS                3.385  "CC=C(C)[CH]1C=C[CH]2C[CH](C)C[CH](C)[CH]2[CH]1C(O)=C3C(=O)N[CH](C[C](C)(O)C(O)=O)C3=O"  
WK1  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C/C=C(\C)/[C@H]1C=C[C@H]2C[C@H](C[C@H]([C@@H]2[C@H]1/C(=C\3/C(=O)[C@@H](NC3=O)C[C@@](C)(C(=O)O)O)/O)C)C"  
WK1  SMILES            "OpenEye OEToolkits"  2.0.7  "CC=C(C)C1C=CC2CC(CC(C2C1C(=C3C(=O)C(NC3=O)CC(C)(C(=O)O)O)O)C)C"  
#
_pdbx_chem_comp_identifier.comp_id          WK1
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-3-[(2~{S},4~{E})-4-[[(1~{R},2~{S},4~{a}~{R},6~{S},8~{R},8~{a}~{S})-2-[(~{E})-but-2-en-2-yl]-6,8-dimethyl-1,2,4~{a},5,6,7,8,8~{a}-octahydronaphthalen-1-yl]-oxidanyl-methylidene]-3,5-bis(oxidanylidene)pyrrolidin-2-yl]-2-methyl-2-oxidanyl-propanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WK1  "Create component"    2019-07-03  PDBJ  
WK1  "Modify coordinates"  2019-08-09  PDBJ  
WK1  "Initial release"     2020-06-24  RCSB  
##
