data_VV1
#

_chem_comp.id                                   VV1
_chem_comp.name                                 "3-[(1~{S},2~{S},5~{R})-2-carboxy-3,6-diazabicyclo[3.2.0]heptan-1-yl]propyl-$l^{3}-oxidanyl-bis(oxidanyl)boranuide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H18 B N2 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   -1
_chem_comp.pdbx_initial_date                    2020-09-16
_chem_comp.pdbx_modified_date                   2021-12-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       245.061
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VV1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7K4J
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VV1  N1   N1   N   0  1  N  N  N  13.332  3.730  25.594   0.484  -2.376  -0.275  N1   VV1   1  
VV1  C4   C1   C   0  1  N  N  N  14.752  3.728  25.087   0.978  -1.533  -1.378  C4   VV1   2  
VV1  C5   C2   C   0  1  N  N  S  14.325  4.587  23.883   1.237  -0.414  -0.358  C5   VV1   3  
VV1  C6   C3   C   0  1  N  N  N  14.972  4.209  22.531   0.133   0.625  -0.154  C6   VV1   4  
VV1  C7   C4   C   0  1  N  N  N  14.557  2.917  21.812  -1.225  -0.078  -0.101  C7   VV1   5  
VV1  C8   C5   C   0  1  N  N  N  15.081  2.812  20.378  -2.332   0.964   0.072  C8   VV1   6  
VV1  O    O1   O   0  1  N  N  N  14.959  7.878  22.681   2.911   1.886   1.134  O    VV1   7  
VV1  C    C6   C   0  1  N  N  N  15.256  7.041  23.504   2.685   1.589  -0.015  C    VV1   8  
VV1  O1   O2   O   0  1  N  N  N  16.468  6.820  23.920   2.444   2.550  -0.921  O1   VV1   9  
VV1  C1   C7   C   0  1  N  N  S  14.241  6.111  24.234   2.673   0.141  -0.432  C1   VV1  10  
VV1  C3   C8   C   0  1  N  N  R  12.867  4.123  24.198   1.313  -1.588   0.650  C3   VV1  11  
VV1  C2   C9   C   0  1  N  N  N  11.946  5.338  24.053   2.811  -1.971   0.624  C2   VV1  12  
VV1  N    N2   N   0  1  N  N  N  12.836  6.544  23.945   3.496  -0.658   0.501  N    VV1  13  
VV1  B    B1   B  -1  1  N  N  N  14.579  1.486  19.692  -3.750   0.231   0.128  B    VV1  14  
VV1  O4   O3   O   0  1  N  N  N  13.094  1.528  19.504  -3.952  -0.460  -1.034  O4   VV1  15  
VV1  O3   O4   O   0  1  N  N  N  14.817  0.224  20.390  -3.772  -0.637   1.184  O3   VV1  16  
VV1  O2   O5   O   0  1  N  N  N  15.234  1.312  18.328  -4.739   1.162   0.283  O2   VV1  17  
VV1  H1   H1   H   0  1  N  N  N  13.147  4.415  26.298   0.831  -3.320  -0.358  H1   VV1  18  
VV1  H3   H3   H   0  1  N  N  N  15.130  2.731  24.816   1.887  -1.916  -1.840  H3   VV1  19  
VV1  H4   H4   H   0  1  N  N  N  15.469  4.222  25.759   0.208  -1.283  -2.108  H4   VV1  20  
VV1  H5   H5   H   0  1  N  N  N  16.056  4.140  22.707   0.303   1.158   0.781  H5   VV1  21  
VV1  H6   H6   H   0  1  N  N  N  14.765  5.038  21.838   0.143   1.333  -0.983  H6   VV1  22  
VV1  H7   H7   H   0  1  N  N  N  13.458  2.874  21.784  -1.386  -0.628  -1.028  H7   VV1  23  
VV1  H8   H8   H   0  1  N  N  N  14.943  2.062  22.386  -1.243  -0.770   0.741  H8   VV1  24  
VV1  H9   H9   H   0  1  N  N  N  16.181  2.814  20.395  -2.171   1.515   0.999  H9   VV1  25  
VV1  H10  H10  H   0  1  N  N  N  14.721  3.675  19.799  -2.314   1.657  -0.769  H10  VV1  26  
VV1  H11  H11  H   0  1  N  N  N  17.067  7.412  23.480   2.463   3.465  -0.607  H11  VV1  27  
VV1  H12  H12  H   0  1  N  N  N  14.417  6.211  25.315   3.057   0.044  -1.447  H12  VV1  28  
VV1  H13  H13  H   0  1  N  N  N  12.552  3.265  23.586   0.888  -1.411   1.638  H13  VV1  29  
VV1  H14  H14  H   0  1  N  N  N  11.293  5.426  24.934   3.097  -2.468   1.550  H14  VV1  30  
VV1  H15  H15  H   0  1  N  N  N  11.329  5.240  23.148   3.032  -2.604  -0.235  H15  VV1  31  
VV1  H16  H16  H   0  1  N  N  N  12.781  6.924  23.022   3.570  -0.203   1.399  H16  VV1  32  
VV1  H18  H18  H   0  1  N  N  N  12.671  1.636  20.347  -3.948   0.095  -1.827  H18  VV1  33  
VV1  H19  H19  H   0  1  N  N  N  14.431  0.263  21.257  -3.635  -0.216   2.043  H19  VV1  34  
VV1  H2   H2   H   0  1  N  N  N  16.178  1.284  18.431  -5.629   0.787   0.325  H2   VV1  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VV1  O2  B    SING  N  N   1  
VV1  O4  B    SING  N  N   2  
VV1  B   C8   SING  N  N   3  
VV1  B   O3   SING  N  N   4  
VV1  C8  C7   SING  N  N   5  
VV1  C7  C6   SING  N  N   6  
VV1  C6  C5   SING  N  N   7  
VV1  O   C    DOUB  N  N   8  
VV1  C   O1   SING  N  N   9  
VV1  C   C1   SING  N  N  10  
VV1  C5  C3   SING  N  N  11  
VV1  C5  C1   SING  N  N  12  
VV1  C5  C4   SING  N  N  13  
VV1  N   C2   SING  N  N  14  
VV1  N   C1   SING  N  N  15  
VV1  C2  C3   SING  N  N  16  
VV1  C3  N1   SING  N  N  17  
VV1  C4  N1   SING  N  N  18  
VV1  N1  H1   SING  N  N  19  
VV1  C4  H3   SING  N  N  20  
VV1  C4  H4   SING  N  N  21  
VV1  C6  H5   SING  N  N  22  
VV1  C6  H6   SING  N  N  23  
VV1  C7  H7   SING  N  N  24  
VV1  C7  H8   SING  N  N  25  
VV1  C8  H9   SING  N  N  26  
VV1  C8  H10  SING  N  N  27  
VV1  O1  H11  SING  N  N  28  
VV1  C1  H12  SING  N  N  29  
VV1  C3  H13  SING  N  N  30  
VV1  C2  H14  SING  N  N  31  
VV1  C2  H15  SING  N  N  32  
VV1  N   H16  SING  N  N  33  
VV1  O4  H18  SING  N  N  34  
VV1  O3  H19  SING  N  N  35  
VV1  O2  H2   SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VV1  SMILES            ACDLabs               12.01  "O=C(O)C1NCC2NCC12CCC[B-](O)(O)O"  
VV1  InChI             InChI                 1.03   "InChI=1S/C9H18BN2O5/c13-8(14)7-9(2-1-3-10(15,16)17)5-12-6(9)4-11-7/h6-7,11-12,15-17H,1-5H2,(H,13,14)/q-1/t6-,7+,9-/m0/s1"  
VV1  InChIKey          InChI                 1.03   BCFOBXHGEQBWQU-OOZYFLPDSA-N  
VV1  SMILES_CANONICAL  CACTVS                3.385  "OC(=O)[C@H]1NC[C@@H]2NC[C@]12CCC[B-](O)(O)O"  
VV1  SMILES            CACTVS                3.385  "OC(=O)[CH]1NC[CH]2NC[C]12CCC[B-](O)(O)O"  
VV1  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "[B-](CCC[C@]12CN[C@H]1CN[C@@H]2C(=O)O)(O)(O)O"  
VV1  SMILES            "OpenEye OEToolkits"  2.0.7  "[B-](CCCC12CNC1CNC2C(=O)O)(O)(O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VV1  "SYSTEMATIC NAME"  ACDLabs               12.01  "{3-[(1S,2S,5R)-2-carboxy-3,6-diazabicyclo[3.2.0]heptan-1-yl]propyl}(trihydroxido)borate(1-)"  
VV1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "3-[(1~{S},2~{S},5~{R})-2-carboxy-3,6-diazabicyclo[3.2.0]heptan-1-yl]propyl-tris(oxidanyl)boranuide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VV1  "Create component"  2020-09-16  RCSB  
VV1  "Initial release"   2021-12-01  RCSB  
VV1  "Modify charge"     2021-12-01  RCSB  
##
