data_VA1
# 
_chem_comp.id                                    VA1 
_chem_comp.name                                  "{5-[(DIFORMYLAMINO)METHYL]-1-BENZOTHIEN-2-YL}BORONIC ACID" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H10 B N O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "5-DIFORMYLAMINOMETHYL-BENZO[B]THIOPHEN-2-BORONIC ACID" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-09-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        263.077 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VA1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VA1 O24  O24  O 0 1 N N N N N N 47.891 8.838  78.689 ? ? ? O24  VA1 1  
VA1 C23  C23  C 0 1 N N N N N N 48.831 8.191  79.198 ? ? ? C23  VA1 2  
VA1 N22  N22  N 0 1 N N N N N N 50.095 8.209  78.895 ? ? ? N22  VA1 3  
VA1 C17  C17  C 0 1 N N N N N N 50.882 9.024  79.497 ? ? ? C17  VA1 4  
VA1 O18  O18  O 0 1 N N N N N N 50.992 10.225 79.202 ? ? ? O18  VA1 5  
VA1 C12  C12  C 0 1 N N N N N N 50.713 7.260  77.931 ? ? ? C12  VA1 6  
VA1 C14  C14  C 0 1 Y N N N N N 50.249 7.424  76.485 ? ? ? C14  VA1 7  
VA1 C13  C13  C 0 1 Y N N N N N 49.797 6.302  75.775 ? ? ? C13  VA1 8  
VA1 C10  C10  C 0 1 Y N N N N N 49.331 6.397  74.466 ? ? ? C10  VA1 9  
VA1 C9   C9   C 0 1 Y N N N N N 48.815 5.319  73.624 ? ? ? C9   VA1 10 
VA1 C15  C15  C 0 1 Y N N N N N 50.262 8.675  75.863 ? ? ? C15  VA1 11 
VA1 C16  C16  C 0 1 Y N N N N N 49.813 8.796  74.545 ? ? ? C16  VA1 12 
VA1 C11  C11  C 0 1 Y N N N N N 49.371 7.647  73.887 ? ? ? C11  VA1 13 
VA1 S19  S19  S 0 1 Y N N N N N 48.783 7.590  72.320 ? ? ? S19  VA1 14 
VA1 C8   C8   C 0 1 Y N N N N N 48.465 5.903  72.400 ? ? ? C8   VA1 15 
VA1 B7   B7   B 0 1 N N N N N N 47.958 5.149  71.148 ? ? ? B7   VA1 16 
VA1 O20  O20  O 0 1 N N N N N N 48.908 4.007  70.815 ? ? ? O20  VA1 17 
VA1 O21  O21  O 0 1 N N N N N N 47.623 5.919  69.860 ? ? ? O21  VA1 18 
VA1 H23  H23  H 0 1 N N N N N N 48.555 7.524  80.001 ? ? ? H23  VA1 19 
VA1 H17  H17  H 0 1 N N N N N N 51.484 8.643  80.308 ? ? ? H17  VA1 20 
VA1 H121 1H12 H 0 0 N N N N N N 50.455 6.240  78.252 ? ? ? H121 VA1 21 
VA1 H122 2H12 H 0 0 N N N N N N 51.794 7.466  77.938 ? ? ? H122 VA1 22 
VA1 H13  H13  H 0 1 N N N N N N 49.811 5.336  76.258 ? ? ? H13  VA1 23 
VA1 H9   H9   H 0 1 N N N N N N 48.722 4.277  73.893 ? ? ? H9   VA1 24 
VA1 H15  H15  H 0 1 N N N N N N 50.617 9.544  76.398 ? ? ? H15  VA1 25 
VA1 H16  H16  H 0 1 N N N N N N 49.808 9.755  74.048 ? ? ? H16  VA1 26 
VA1 HO20 HO20 H 0 0 N N N N N N 49.106 4.020  69.886 ? ? ? HO20 VA1 27 
VA1 HO21 HO21 H 0 0 N N N N N N 47.554 6.846  70.054 ? ? ? HO21 VA1 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VA1 O24 C23  DOUB N N 1  
VA1 C23 N22  SING N N 2  
VA1 C23 H23  SING N N 3  
VA1 N22 C12  SING N N 4  
VA1 N22 C17  SING N N 5  
VA1 C17 O18  DOUB N N 6  
VA1 C17 H17  SING N N 7  
VA1 C12 C14  SING N N 8  
VA1 C12 H121 SING N N 9  
VA1 C12 H122 SING N N 10 
VA1 C14 C13  DOUB Y N 11 
VA1 C14 C15  SING Y N 12 
VA1 C13 C10  SING Y N 13 
VA1 C13 H13  SING N N 14 
VA1 C10 C9   SING Y N 15 
VA1 C10 C11  DOUB Y N 16 
VA1 C9  C8   DOUB Y N 17 
VA1 C9  H9   SING N N 18 
VA1 C15 C16  DOUB Y N 19 
VA1 C15 H15  SING N N 20 
VA1 C16 C11  SING Y N 21 
VA1 C16 H16  SING N N 22 
VA1 C11 S19  SING Y N 23 
VA1 S19 C8   SING Y N 24 
VA1 C8  B7   SING N N 25 
VA1 B7  O21  SING N N 26 
VA1 B7  O20  SING N N 27 
VA1 O20 HO20 SING N N 28 
VA1 O21 HO21 SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VA1 SMILES           ACDLabs              10.04 "O=CN(C=O)Cc2cc1c(sc(c1)B(O)O)cc2"                                                            
VA1 SMILES_CANONICAL CACTVS               3.341 "OB(O)c1sc2ccc(CN(C=O)C=O)cc2c1"                                                              
VA1 SMILES           CACTVS               3.341 "OB(O)c1sc2ccc(CN(C=O)C=O)cc2c1"                                                              
VA1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "B(c1cc2cc(ccc2s1)CN(C=O)C=O)(O)O"                                                            
VA1 SMILES           "OpenEye OEToolkits" 1.5.0 "B(c1cc2cc(ccc2s1)CN(C=O)C=O)(O)O"                                                            
VA1 InChI            InChI                1.03  "InChI=1S/C11H10BNO4S/c14-6-13(7-15)5-8-1-2-10-9(3-8)4-11(18-10)12(16)17/h1-4,6-7,16-17H,5H2" 
VA1 InChIKey         InChI                1.03  GVTZPLCQJFQOTQ-UHFFFAOYSA-N                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VA1 "SYSTEMATIC NAME" ACDLabs              10.04 "{5-[(diformylamino)methyl]-1-benzothiophen-2-yl}boronic acid"    
VA1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[5-[(dimethanoylamino)methyl]-1-benzothiophen-2-yl]boronic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VA1 "Create component"  2006-09-01 RCSB 
VA1 "Modify descriptor" 2011-06-04 RCSB 
VA1 "Modify synonyms"   2020-06-05 PDBE 
VA1 "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      VA1 
_pdbx_chem_comp_synonyms.name         "5-DIFORMYLAMINOMETHYL-BENZO[B]THIOPHEN-2-BORONIC ACID" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VA1 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B7 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
