data_T51
# 
_chem_comp.id                                    T51 
_chem_comp.name                                  "N-[2-({2-[({4-[(4-methylpiperazin-1-yl)methyl]benzoyl}amino)methyl]benzyl}oxy)phenyl]-3-nitrobenzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H35 N5 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-09-30 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        593.672 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     T51 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DV8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
T51 OAD O1  O 0  1 N N N N N N -19.009 18.098 -25.901 10.721  1.508  -0.380 OAD T51 1  
T51 NBS N1  N 1  1 N N N N N N -19.241 19.057 -26.858 10.334  0.781  -1.278 NBS T51 2  
T51 OAE O2  O -1 1 N N N N N N -18.451 19.126 -27.963 11.136  0.294  -2.055 OAE T51 3  
T51 CBM C1  C 0  1 Y N N N N N -20.264 19.936 -26.714 8.891   0.484  -1.420 CBM T51 4  
T51 CAU C2  C 0  1 Y N N N N N -20.768 20.099 -25.473 7.985   1.031  -0.536 CAU T51 5  
T51 CAT C3  C 0  1 Y N N N N N -20.765 20.614 -27.768 8.454   -0.338 -2.444 CAT T51 6  
T51 CAP C4  C 0  1 Y N N N N N -21.807 21.473 -27.548 7.107   -0.621 -2.584 CAP T51 7  
T51 CBI C5  C 0  1 Y N N N N N -22.323 21.646 -26.301 6.190   -0.085 -1.703 CBI T51 8  
T51 CBP C6  C 0  1 Y N N N N N -21.795 20.958 -25.248 6.625   0.749  -0.671 CBP T51 9  
T51 CBG C7  C 0  1 N N N N N N -22.244 21.042 -23.838 5.648   1.332  0.273  CBG T51 10 
T51 OAC O3  O 0  1 N N N N N N -22.577 20.039 -23.327 6.029   2.059  1.170  OAC T51 11 
T51 NBD N2  N 0  1 N N N N N N -22.205 22.173 -23.198 4.335   1.059  0.139  NBD T51 12 
T51 CBN C8  C 0  1 Y N N N N N -22.391 22.328 -21.899 3.421   1.534  1.087  CBN T51 13 
T51 CAO C9  C 0  1 Y N N N N N -21.725 21.591 -20.978 3.623   2.766  1.692  CAO T51 14 
T51 CAI C10 C 0  1 Y N N N N N -21.946 21.800 -19.643 2.719   3.233  2.627  CAI T51 15 
T51 CAJ C11 C 0  1 Y N N N N N -22.818 22.762 -19.236 1.612   2.475  2.962  CAJ T51 16 
T51 CAQ C12 C 0  1 Y N N N N N -23.469 23.512 -20.177 1.404   1.247  2.364  CAQ T51 17 
T51 CBO C13 C 0  1 Y N N N N N -23.238 23.291 -21.503 2.302   0.774  1.421  CBO T51 18 
T51 OBE O4  O 0  1 N N N N N N -23.846 24.002 -22.474 2.096   -0.432 0.828  OBE T51 19 
T51 CBA C14 C 0  1 N N N N N N -24.821 24.988 -22.239 0.928   -1.157 1.219  CBA T51 20 
T51 CBL C15 C 0  1 Y N N N N N -25.125 25.679 -23.528 0.867   -2.458 0.463  CBL T51 21 
T51 CAL C16 C 0  1 Y N N N N N -26.052 25.151 -24.392 1.860   -2.778 -0.445 CAL T51 22 
T51 CAH C17 C 0  1 Y N N N N N -26.351 25.758 -25.589 1.804   -3.972 -1.139 CAH T51 23 
T51 CAG C18 C 0  1 Y N N N N N -25.716 26.927 -25.911 0.755   -4.846 -0.926 CAG T51 24 
T51 CAK C19 C 0  1 Y N N N N N -24.794 27.456 -25.045 -0.238  -4.528 -0.018 CAK T51 25 
T51 CBK C20 C 0  1 Y N N N N N -24.487 26.836 -23.852 -0.179  -3.336 0.680  CBK T51 26 
T51 CAZ C21 C 0  1 N N N N N N -23.484 27.423 -22.900 -1.261  -2.989 1.670  CAZ T51 27 
T51 NBC N3  N 0  1 N N N N N N -22.764 28.482 -23.538 -2.206  -2.055 1.052  NBC T51 28 
T51 CBF C22 C 0  1 N N N N N N -22.869 29.734 -23.177 -3.263  -1.603 1.755  CBF T51 29 
T51 OAB O5  O 0  1 N N N N N N -23.742 30.078 -22.466 -3.433  -1.970 2.902  OAB T51 30 
T51 CBJ C23 C 0  1 Y N N N N N -21.904 30.772 -23.609 -4.217  -0.661 1.132  CBJ T51 31 
T51 CAS C24 C 0  1 Y N N N N N -22.279 32.084 -23.669 -5.313  -0.191 1.857  CAS T51 32 
T51 CAN C25 C 0  1 Y N N N N N -21.386 33.056 -24.067 -6.199  0.688  1.269  CAN T51 33 
T51 CAR C26 C 0  1 Y N N N N N -20.619 30.439 -23.955 -4.022  -0.234 -0.183 CAR T51 34 
T51 CAM C27 C 0  1 Y N N N N N -19.727 31.403 -24.354 -4.916  0.646  -0.758 CAM T51 35 
T51 CBH C28 C 0  1 Y N N N N N -20.102 32.718 -24.410 -6.004  1.104  -0.036 CBH T51 36 
T51 CBB C29 C 0  1 N N N N N N -19.111 33.766 -24.846 -6.975  2.064  -0.671 CBB T51 37 
T51 NBR N4  N 0  1 N N N N N N -18.270 34.175 -23.711 -8.045  1.310  -1.337 NBR T51 38 
T51 CAX C30 C 0  1 N N N N N N -16.977 34.688 -24.169 -8.866  0.584  -0.358 CAX T51 39 
T51 CAV C31 C 0  1 N N N N N N -16.086 34.991 -22.965 -9.917  -0.250 -1.095 CAV T51 40 
T51 NBQ N5  N 0  1 N N N N N N -16.741 35.934 -22.034 -10.749 0.635  -1.922 NBQ T51 41 
T51 CAA C32 C 0  1 N N N N N N -16.753 37.305 -22.568 -11.518 1.566  -1.087 CAA T51 42 
T51 CAW C33 C 0  1 N N N N N N -18.099 35.506 -21.675 -9.928  1.361  -2.901 CAW T51 43 
T51 CAY C34 C 0  1 N N N N N N -18.928 35.216 -22.915 -8.877  2.195  -2.164 CAY T51 44 
T51 H1  H1  H 0  1 N N N N N N -20.350 19.540 -24.649 8.328   1.675  0.260  H1  T51 45 
T51 H2  H2  H 0  1 N N N N N N -20.355 20.482 -28.758 9.167   -0.760 -3.137 H2  T51 46 
T51 H3  H3  H 0  1 N N N N N N -22.227 22.023 -28.378 6.772   -1.264 -3.385 H3  T51 47 
T51 H4  H4  H 0  1 N N N N N N -23.148 22.326 -26.145 5.139   -0.306 -1.814 H4  T51 48 
T51 H5  H5  H 0  1 N N N N N N -22.018 22.996 -23.735 4.024   0.532  -0.614 H5  T51 49 
T51 H6  H6  H 0  1 N N N N N N -21.019 20.838 -21.297 4.487   3.360  1.433  H6  T51 50 
T51 H7  H7  H 0  1 N N N N N N -21.427 21.199 -18.911 2.878   4.192  3.097  H7  T51 51 
T51 H8  H8  H 0  1 N N N N N N -22.994 22.931 -18.184 0.909   2.844  3.694  H8  T51 52 
T51 H9  H9  H 0  1 N N N N N N -24.165 24.278 -19.870 0.538   0.657  2.628  H9  T51 53 
T51 H10 H10 H 0  1 N N N N N N -24.441 25.718 -21.509 0.968   -1.360 2.289  H10 T51 54 
T51 H11 H11 H 0  1 N N N N N N -25.735 24.518 -21.846 0.041   -0.564 0.995  H11 T51 55 
T51 H12 H12 H 0  1 N N N N N N -26.559 24.236 -24.125 2.679   -2.094 -0.611 H12 T51 56 
T51 H13 H13 H 0  1 N N N N N N -27.073 25.321 -26.262 2.579   -4.221 -1.848 H13 T51 57 
T51 H14 H14 H 0  1 N N N N N N -25.940 27.429 -26.841 0.711   -5.779 -1.469 H14 T51 58 
T51 H15 H15 H 0  1 N N N N N N -24.297 28.379 -25.303 -1.057  -5.211 0.148  H15 T51 59 
T51 H16 H16 H 0  1 N N N N N N -24.008 27.819 -22.018 -1.787  -3.896 1.966  H16 T51 60 
T51 H17 H17 H 0  1 N N N N N N -22.778 26.640 -22.586 -0.813  -2.524 2.549  H17 T51 61 
T51 H18 H18 H 0  1 N N N N N N -22.152 28.254 -24.295 -2.071  -1.763 0.137  H18 T51 62 
T51 H19 H19 H 0  1 N N N N N N -23.287 32.363 -23.401 -5.468  -0.515 2.875  H19 T51 63 
T51 H20 H20 H 0  1 N N N N N N -21.699 34.089 -24.109 -7.048  1.053  1.829  H20 T51 64 
T51 H21 H21 H 0  1 N N N N N N -20.306 29.406 -23.913 -3.174  -0.590 -0.748 H21 T51 65 
T51 H22 H22 H 0  1 N N N N N N -18.721 31.121 -24.626 -4.766  0.978  -1.775 H22 T51 66 
T51 H23 H23 H 0  1 N N N N N N -18.472 33.353 -25.641 -7.407  2.706  0.098  H23 T51 67 
T51 H24 H24 H 0  1 N N N N N N -19.654 34.642 -25.230 -6.452  2.678  -1.404 H24 T51 68 
T51 H26 H26 H 0  1 N N N N N N -16.489 33.934 -24.804 -8.229  -0.074 0.234  H26 T51 69 
T51 H27 H27 H 0  1 N N N N N N -17.134 35.610 -24.749 -9.364  1.297  0.300  H27 T51 70 
T51 H28 H28 H 0  1 N N N N N N -15.872 34.052 -22.433 -9.419  -0.981 -1.732 H28 T51 71 
T51 H29 H29 H 0  1 N N N N N N -15.144 35.434 -23.319 -10.545 -0.767 -0.370 H29 T51 72 
T51 H31 H31 H 0  1 N N N N N N -17.247 37.975 -21.849 -10.834 2.178  -0.499 H31 T51 73 
T51 H32 H32 H 0  1 N N N N N N -15.719 37.643 -22.733 -12.125 2.210  -1.724 H32 T51 74 
T51 H33 H33 H 0  1 N N N N N N -17.301 37.322 -23.521 -12.167 1.002  -0.417 H33 T51 75 
T51 H34 H34 H 0  1 N N N N N N -18.586 36.305 -21.096 -9.430  0.648  -3.559 H34 T51 76 
T51 H35 H35 H 0  1 N N N N N N -18.038 34.594 -21.063 -10.565 2.019  -3.493 H35 T51 77 
T51 H36 H36 H 0  1 N N N N N N -19.022 36.133 -23.516 -9.375  2.926  -1.527 H36 T51 78 
T51 H37 H37 H 0  1 N N N N N N -19.928 34.871 -22.615 -8.249  2.712  -2.889 H37 T51 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
T51 OAE NBS SING N N 1  
T51 CAT CAP DOUB Y N 2  
T51 CAT CBM SING Y N 3  
T51 CAP CBI SING Y N 4  
T51 NBS CBM SING N N 5  
T51 NBS OAD DOUB N N 6  
T51 CBM CAU DOUB Y N 7  
T51 CBI CBP DOUB Y N 8  
T51 CAG CAH DOUB Y N 9  
T51 CAG CAK SING Y N 10 
T51 CAH CAL SING Y N 11 
T51 CAU CBP SING Y N 12 
T51 CBP CBG SING N N 13 
T51 CAK CBK DOUB Y N 14 
T51 CBB CBH SING N N 15 
T51 CBB NBR SING N N 16 
T51 CBH CAM DOUB Y N 17 
T51 CBH CAN SING Y N 18 
T51 CAL CBL DOUB Y N 19 
T51 CAM CAR SING Y N 20 
T51 CAX NBR SING N N 21 
T51 CAX CAV SING N N 22 
T51 CAN CAS DOUB Y N 23 
T51 CAR CBJ DOUB Y N 24 
T51 CBK CBL SING Y N 25 
T51 CBK CAZ SING N N 26 
T51 CBG OAC DOUB N N 27 
T51 CBG NBD SING N N 28 
T51 NBR CAY SING N N 29 
T51 CAS CBJ SING Y N 30 
T51 CBJ CBF SING N N 31 
T51 NBC CBF SING N N 32 
T51 NBC CAZ SING N N 33 
T51 CBL CBA SING N N 34 
T51 NBD CBN SING N N 35 
T51 CBF OAB DOUB N N 36 
T51 CAV NBQ SING N N 37 
T51 CAY CAW SING N N 38 
T51 CAA NBQ SING N N 39 
T51 OBE CBA SING N N 40 
T51 OBE CBO SING N N 41 
T51 NBQ CAW SING N N 42 
T51 CBN CBO DOUB Y N 43 
T51 CBN CAO SING Y N 44 
T51 CBO CAQ SING Y N 45 
T51 CAO CAI DOUB Y N 46 
T51 CAQ CAJ DOUB Y N 47 
T51 CAI CAJ SING Y N 48 
T51 CAU H1  SING N N 49 
T51 CAT H2  SING N N 50 
T51 CAP H3  SING N N 51 
T51 CBI H4  SING N N 52 
T51 NBD H5  SING N N 53 
T51 CAO H6  SING N N 54 
T51 CAI H7  SING N N 55 
T51 CAJ H8  SING N N 56 
T51 CAQ H9  SING N N 57 
T51 CBA H10 SING N N 58 
T51 CBA H11 SING N N 59 
T51 CAL H12 SING N N 60 
T51 CAH H13 SING N N 61 
T51 CAG H14 SING N N 62 
T51 CAK H15 SING N N 63 
T51 CAZ H16 SING N N 64 
T51 CAZ H17 SING N N 65 
T51 NBC H18 SING N N 66 
T51 CAS H19 SING N N 67 
T51 CAN H20 SING N N 68 
T51 CAR H21 SING N N 69 
T51 CAM H22 SING N N 70 
T51 CBB H23 SING N N 71 
T51 CBB H24 SING N N 72 
T51 CAX H26 SING N N 73 
T51 CAX H27 SING N N 74 
T51 CAV H28 SING N N 75 
T51 CAV H29 SING N N 76 
T51 CAA H31 SING N N 77 
T51 CAA H32 SING N N 78 
T51 CAA H33 SING N N 79 
T51 CAW H34 SING N N 80 
T51 CAW H35 SING N N 81 
T51 CAY H36 SING N N 82 
T51 CAY H37 SING N N 83 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
T51 SMILES           ACDLabs              12.01 "O=[N+](c1cc(ccc1)C(=O)Nc2c(cccc2)OCc3ccccc3CNC(=O)c4ccc(cc4)CN5CCN(CC5)C)[O-]"                                                                                                                                 
T51 InChI            InChI                1.03  "InChI=1S/C34H35N5O5/c1-37-17-19-38(20-18-37)23-25-13-15-26(16-14-25)33(40)35-22-28-7-2-3-8-29(28)24-44-32-12-5-4-11-31(32)36-34(41)27-9-6-10-30(21-27)39(42)43/h2-16,21H,17-20,22-24H2,1H3,(H,35,40)(H,36,41)" 
T51 InChIKey         InChI                1.03  VZOUZIPPEQZPII-UHFFFAOYSA-N                                                                                                                                                                                     
T51 SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3ccccc3COc4ccccc4NC(=O)c5cccc(c5)[N+]([O-])=O"                                                                                                                                   
T51 SMILES           CACTVS               3.385 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3ccccc3COc4ccccc4NC(=O)c5cccc(c5)[N+]([O-])=O"                                                                                                                                   
T51 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3ccccc3COc4ccccc4NC(=O)c5cccc(c5)[N+](=O)[O-]"                                                                                                                                   
T51 SMILES           "OpenEye OEToolkits" 1.9.2 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3ccccc3COc4ccccc4NC(=O)c5cccc(c5)[N+](=O)[O-]"                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
T51 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[2-({2-[({4-[(4-methylpiperazin-1-yl)methyl]benzoyl}amino)methyl]benzyl}oxy)phenyl]-3-nitrobenzamide"             
T51 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "N-[2-[[2-[[[4-[(4-methylpiperazin-1-yl)methyl]phenyl]carbonylamino]methyl]phenyl]methoxy]phenyl]-3-nitro-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
T51 "Create component" 2015-09-30 PDBJ 
T51 "Initial release"  2016-09-21 RCSB 
T51 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            T51 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CBI 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
