data_S51
#

_chem_comp.id                                   S51
_chem_comp.name                                 "2-benzyl-1-phenyl-3-(piperazin-1-ylcarbonyl)-1H-indole"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H25 N3 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2-Benzyl-1-phenyl-1H-indol-3-yl)-piperazin-1-yl-methanone"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-09-03
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       395.496
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S51
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3OOT
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S51  C1    C1    C  0  1  Y  N  N  -29.584  -51.492  -22.054  -5.003  -1.308  -1.673  C1    S51   1  
S51  C2    C2    C  0  1  Y  N  N  -30.348  -51.283  -20.905  -4.825  -1.233  -0.303  C2    S51   2  
S51  C3    C3    C  0  1  Y  N  N  -31.419  -52.142  -20.624  -3.553  -1.135   0.225  C3    S51   3  
S51  C4    C4    C  0  1  Y  N  N  -31.795  -53.227  -21.445  -2.452  -1.112  -0.620  C4    S51   4  
S51  C5    C5    C  0  1  Y  N  N  -30.996  -53.385  -22.598  -2.633  -1.188  -1.995  C5    S51   5  
S51  C6    C6    C  0  1  Y  N  N  -29.909  -52.555  -22.897  -3.908  -1.285  -2.517  C6    S51   6  
S51  N12   N12   N  0  1  Y  N  N  -32.837  -54.039  -21.134  -1.160  -1.012  -0.087  N12   S51   7  
S51  C13   C13   C  0  1  Y  N  N  -34.117  -53.649  -21.290  -0.557  -1.970   0.704  C13   S51   8  
S51  C14   C14   C  0  1  Y  N  N  -34.888  -54.769  -20.936   0.725  -1.499   1.031  C14   S51   9  
S51  C15   C15   C  0  1  Y  N  N  -33.991  -55.756  -20.501   0.852  -0.183   0.378  C15   S51  10  
S51  C16   C16   C  0  1  Y  N  N  -32.683  -55.327  -20.751  -0.322   0.038  -0.280  C16   S51  11  
S51  C17   C17   C  0  1  Y  N  N  -34.749  -52.455  -21.667  -0.972  -3.207   1.184  C17   S51  12  
S51  C18   C18   C  0  1  Y  N  N  -36.145  -52.393  -21.693  -0.127  -3.958   1.972  C18   S51  13  
S51  C19   C19   C  0  1  Y  N  N  -36.909  -53.515  -21.342   1.139  -3.492   2.295  C19   S51  14  
S51  C20   C20   C  0  1  Y  N  N  -36.289  -54.712  -20.962   1.568  -2.268   1.829  C20   S51  15  
S51  C26   C26   C  0  1  Y  N  N  -31.326  -56.500  -19.027  -1.200   2.335  -0.195  C26   S51  16  
S51  C29   C29   C  0  1  Y  N  N  -31.167  -57.858  -18.741  -0.370   3.322   0.303  C29   S51  17  
S51  C30   C30   C  0  1  Y  N  N  -31.123  -58.279  -17.416  -0.884   4.308   1.124  C30   S51  18  
S51  C31   C31   C  0  1  Y  N  N  -31.240  -57.329  -16.397  -2.228   4.307   1.447  C31   S51  19  
S51  C32   C32   C  0  1  Y  N  N  -31.422  -55.971  -16.680  -3.059   3.321   0.948  C32   S51  20  
S51  C33   C33   C  0  1  Y  N  N  -31.454  -55.550  -18.007  -2.544   2.334   0.128  C33   S51  21  
S51  C39   C39   C  0  1  N  N  N  -34.463  -57.157  -20.158   2.016   0.711   0.423  C39   S51  22  
S51  N40   N40   N  0  1  N  N  N  -35.202  -57.447  -19.063   3.006   0.576  -0.482  N40   S51  23  
S51  O41   O41   O  0  1  N  N  N  -34.117  -58.062  -20.906   2.087   1.575   1.278  O41   S51  24  
S51  C42   C42   C  0  1  N  N  N  -35.665  -56.431  -18.104   4.126   1.528  -0.524  C42   S51  25  
S51  C43   C43   C  0  1  N  N  N  -35.142  -56.826  -16.729   5.438   0.736  -0.507  C43   S51  26  
S51  N44   N44   N  0  1  N  N  N  -35.455  -58.207  -16.404   5.423  -0.253  -1.592  N44   S51  27  
S51  C45   C45   C  0  1  N  N  N  -35.166  -59.240  -17.390   4.350  -1.238  -1.401  C45   S51  28  
S51  C46   C46   C  0  1  N  N  N  -35.645  -58.830  -18.788   2.997  -0.531  -1.450  C46   S51  29  
S51  C60   C60   C  0  1  N  N  N  -31.387  -56.067  -20.467  -0.641   1.264  -1.096  C60   S51  30  
S51  H1    H1    H  0  1  N  N  N  -28.754  -50.841  -22.287  -5.998  -1.389  -2.083  H1    S51  31  
S51  H2    H2    H  0  1  N  N  N  -30.116  -50.466  -20.238  -5.682  -1.252   0.354  H2    S51  32  
S51  H3    H3    H  0  1  N  N  N  -31.991  -51.963  -19.726  -3.415  -1.076   1.295  H3    S51  33  
S51  H5    H5    H  0  1  N  N  N  -31.235  -54.185  -23.283  -1.778  -1.169  -2.655  H5    S51  34  
S51  H6    H6    H  0  1  N  N  N  -29.320  -52.738  -23.783  -4.050  -1.344  -3.586  H6    S51  35  
S51  H17   H17   H  0  1  N  N  N  -34.161  -51.590  -21.935  -1.956  -3.580   0.939  H17   S51  36  
S51  H18   H18   H  0  1  N  N  N  -36.637  -51.477  -21.985  -0.454  -4.919   2.342  H18   S51  37  
S51  H19   H19   H  0  1  N  N  N  -37.987  -53.456  -21.365   1.791  -4.091   2.913  H19   S51  38  
S51  H20   H20   H  0  1  N  N  N  -36.879  -55.576  -20.694   2.555  -1.908   2.082  H20   S51  39  
S51  H29   H29   H  0  1  N  N  N  -31.079  -58.576  -19.543   0.680   3.322   0.051  H29   S51  40  
S51  H30   H30   H  0  1  N  N  N  -31.000  -59.325  -17.178  -0.236   5.078   1.514  H30   S51  41  
S51  H31   H31   H  0  1  N  N  N  -31.189  -57.651  -15.367  -2.630   5.077   2.089  H31   S51  42  
S51  H32   H32   H  0  1  N  N  N  -31.536  -55.257  -15.878  -4.109   3.320   1.201  H32   S51  43  
S51  H33   H33   H  0  1  N  N  N  -31.576  -54.504  -18.246  -3.193   1.563  -0.262  H33   S51  44  
S51  H42   H42   H  0  1  N  N  N  -35.278  -55.441  -18.386   4.068   2.122  -1.436  H42   S51  45  
S51  H42A  H42A  H  0  0  N  N  N  -36.764  -56.393  -18.094   4.082   2.183   0.346  H42A  S51  46  
S51  H43   H43   H  0  1  N  N  N  -34.049  -56.702  -16.719   6.276   1.419  -0.649  H43   S51  47  
S51  H43A  H43A  H  0  0  N  N  N  -35.607  -56.173  -15.975   5.542   0.225   0.450  H43A  S51  48  
S51  HN44  HN44  H  0  0  N  N  N  -34.922  -58.435  -15.589   5.344   0.197  -2.492  HN44  S51  49  
S51  H45   H45   H  0  1  N  N  N  -34.079  -59.406  -17.422   4.399  -1.988  -2.190  H45   S51  50  
S51  H45A  H45A  H  0  0  N  N  N  -35.682  -60.166  -17.096   4.470  -1.722  -0.431  H45A  S51  51  
S51  H46   H46   H  0  1  N  N  N  -36.743  -58.882  -18.832   2.207  -1.237  -1.192  H46   S51  52  
S51  H46A  H46A  H  0  0  N  N  N  -35.218  -59.511  -19.539   2.828  -0.139  -2.453  H46A  S51  53  
S51  H60   H60   H  0  1  N  N  N  -31.332  -56.956  -21.112   0.268   1.629  -1.574  H60   S51  54  
S51  H60A  H60A  H  0  0  N  N  N  -30.539  -55.399  -20.678  -1.376   1.011  -1.860  H60A  S51  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S51  C1   C2    DOUB  Y  N   1  
S51  C1   C6    SING  Y  N   2  
S51  C2   C3    SING  Y  N   3  
S51  C3   C4    DOUB  Y  N   4  
S51  C4   C5    SING  Y  N   5  
S51  C4   N12   SING  Y  N   6  
S51  C5   C6    DOUB  Y  N   7  
S51  N12  C13   SING  Y  N   8  
S51  N12  C16   SING  Y  N   9  
S51  C13  C14   DOUB  Y  N  10  
S51  C13  C17   SING  Y  N  11  
S51  C14  C15   SING  Y  N  12  
S51  C14  C20   SING  Y  N  13  
S51  C15  C16   DOUB  Y  N  14  
S51  C15  C39   SING  N  N  15  
S51  C16  C60   SING  N  N  16  
S51  C17  C18   DOUB  Y  N  17  
S51  C18  C19   SING  Y  N  18  
S51  C19  C20   DOUB  Y  N  19  
S51  C26  C29   DOUB  Y  N  20  
S51  C26  C33   SING  Y  N  21  
S51  C26  C60   SING  N  N  22  
S51  C29  C30   SING  Y  N  23  
S51  C30  C31   DOUB  Y  N  24  
S51  C31  C32   SING  Y  N  25  
S51  C32  C33   DOUB  Y  N  26  
S51  C39  N40   SING  N  N  27  
S51  C39  O41   DOUB  N  N  28  
S51  N40  C42   SING  N  N  29  
S51  N40  C46   SING  N  N  30  
S51  C42  C43   SING  N  N  31  
S51  C43  N44   SING  N  N  32  
S51  N44  C45   SING  N  N  33  
S51  C45  C46   SING  N  N  34  
S51  C1   H1    SING  N  N  35  
S51  C2   H2    SING  N  N  36  
S51  C3   H3    SING  N  N  37  
S51  C5   H5    SING  N  N  38  
S51  C6   H6    SING  N  N  39  
S51  C17  H17   SING  N  N  40  
S51  C18  H18   SING  N  N  41  
S51  C19  H19   SING  N  N  42  
S51  C20  H20   SING  N  N  43  
S51  C29  H29   SING  N  N  44  
S51  C30  H30   SING  N  N  45  
S51  C31  H31   SING  N  N  46  
S51  C32  H32   SING  N  N  47  
S51  C33  H33   SING  N  N  48  
S51  C42  H42   SING  N  N  49  
S51  C42  H42A  SING  N  N  50  
S51  C43  H43   SING  N  N  51  
S51  C43  H43A  SING  N  N  52  
S51  N44  HN44  SING  N  N  53  
S51  C45  H45   SING  N  N  54  
S51  C45  H45A  SING  N  N  55  
S51  C46  H46   SING  N  N  56  
S51  C46  H46A  SING  N  N  57  
S51  C60  H60   SING  N  N  58  
S51  C60  H60A  SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S51  SMILES            ACDLabs               12.01  "O=C(c3c1ccccc1n(c2ccccc2)c3Cc4ccccc4)N5CCNCC5"  
S51  SMILES_CANONICAL  CACTVS                3.370  "O=C(N1CCNCC1)c2c(Cc3ccccc3)n(c4ccccc4)c5ccccc25"  
S51  SMILES            CACTVS                3.370  "O=C(N1CCNCC1)c2c(Cc3ccccc3)n(c4ccccc4)c5ccccc25"  
S51  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "c1ccc(cc1)Cc2c(c3ccccc3n2c4ccccc4)C(=O)N5CCNCC5"  
S51  SMILES            "OpenEye OEToolkits"  1.7.0  "c1ccc(cc1)Cc2c(c3ccccc3n2c4ccccc4)C(=O)N5CCNCC5"  
S51  InChI             InChI                 1.03   "InChI=1S/C26H25N3O/c30-26(28-17-15-27-16-18-28)25-22-13-7-8-14-23(22)29(21-11-5-2-6-12-21)24(25)19-20-9-3-1-4-10-20/h1-14,27H,15-19H2"  
S51  InChIKey          InChI                 1.03   FYDPGAJRQXSCCK-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S51  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2-benzyl-1-phenyl-1H-indol-3-yl)(piperazin-1-yl)methanone"  
S51  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "[1-phenyl-2-(phenylmethyl)indol-3-yl]-piperazin-1-yl-methanone"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S51  "Create component"      2010-09-03  RCSB  
S51  "Modify aromatic_flag"  2011-06-04  RCSB  
S51  "Modify descriptor"     2011-06-04  RCSB  
S51  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     S51
_pdbx_chem_comp_synonyms.name        "(2-Benzyl-1-phenyl-1H-indol-3-yl)-piperazin-1-yl-methanone"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
