data_OW1
# 
_chem_comp.id                                    OW1 
_chem_comp.name                                  "Nirmatrelvir (reacted form)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H35 F3 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(1~{R},2~{S},5~{S})-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-6,6-dimethyl-~{N}-[(2~{S})-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]but-3-en-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        500.554 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OW1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8B2T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OW1 C1  C1  C 0 1 N N N N N N 18.243 -20.591 -30.771 4.493  2.917  1.168  C1  OW1 1  
OW1 C2  C2  C 0 1 N N N N N N 17.576 -19.970 -29.811 4.994  1.729  1.400  C2  OW1 2  
OW1 C3  C3  C 0 1 N N S N N N 18.028 -19.937 -28.359 4.352  0.509  0.793  C3  OW1 3  
OW1 C4  C4  C 0 1 N N N N N N 17.035 -20.763 -27.536 5.398  -0.276 -0.001 C4  OW1 4  
OW1 C5  C5  C 0 1 N N S N N N 17.449 -20.966 -26.071 4.778  -1.578 -0.513 C5  OW1 5  
OW1 C6  C6  C 0 1 N N N N N N 18.692 -21.814 -25.802 4.405  -2.502 0.669  C6  OW1 6  
OW1 C7  C7  C 0 1 N N N N N N 18.379 -22.631 -24.562 4.731  -3.898 0.093  C7  OW1 7  
OW1 N1  N1  N 0 1 N N N N N N 16.927 -22.603 -24.505 5.751  -3.668 -0.937 N1  OW1 8  
OW1 C8  C8  C 0 1 N N N N N N 16.366 -21.668 -25.279 5.795  -2.375 -1.300 C8  OW1 9  
OW1 O1  O1  O 0 1 N N N N N N 15.169 -21.400 -25.338 6.542  -1.914 -2.138 O1  OW1 10 
OW1 N2  N2  N 0 1 N N N N N N 18.124 -18.571 -27.854 3.268  0.922  -0.102 N2  OW1 11 
OW1 C9  C9  C 0 1 N N N N N N 19.252 -18.031 -27.384 2.019  1.078  0.379  C9  OW1 12 
OW1 O2  O2  O 0 1 N N N N N N 20.307 -18.653 -27.304 1.792  0.878  1.554  O2  OW1 13 
OW1 C10 C10 C 0 1 N N S N N N 19.157 -16.579 -26.910 0.905  1.503  -0.542 C10 OW1 14 
OW1 C11 C11 C 0 1 N N R N N N 19.888 -15.642 -27.865 0.899  3.038  -0.708 C11 OW1 15 
OW1 C12 C12 C 0 1 N N S N N N 21.100 -15.089 -27.139 -0.118 3.548  0.334  C12 OW1 16 
OW1 C13 C13 C 0 1 N N N N N N 21.104 -15.655 -25.730 -0.637 2.277  1.039  C13 OW1 17 
OW1 N3  N3  N 0 1 N N N N N N 19.846 -16.415 -25.628 -0.412 1.188  0.061  N3  OW1 18 
OW1 C14 C14 C 0 1 N N N N N N 19.330 -16.943 -24.500 -1.220 0.146  -0.219 C14 OW1 19 
OW1 O3  O3  O 0 1 N N N N N N 18.260 -17.541 -24.504 -0.928 -0.628 -1.105 O3  OW1 20 
OW1 C15 C15 C 0 1 N N S N N N 20.072 -16.736 -23.181 -2.488 -0.056 0.571  C15 OW1 21 
OW1 N4  N4  N 0 1 N N N N N N 19.179 -16.065 -22.249 -3.458 -0.794 -0.243 N4  OW1 22 
OW1 C16 C16 C 0 1 N N N N N N 19.446 -14.854 -21.785 -4.777 -0.669 0.003  C16 OW1 23 
OW1 O4  O4  O 0 1 N N N N N N 20.431 -14.213 -22.088 -5.161 0.053  0.899  O4  OW1 24 
OW1 C17 C17 C 0 1 N N N N N N 18.458 -14.255 -20.784 -5.774 -1.428 -0.834 C17 OW1 25 
OW1 F1  F1  F 0 1 N N N N N N 17.199 -14.597 -21.010 -5.644 -1.048 -2.174 F1  OW1 26 
OW1 F2  F2  F 0 1 N N N N N N 18.495 -12.932 -20.833 -5.536 -2.801 -0.713 F2  OW1 27 
OW1 F3  F3  F 0 1 N N N N N N 18.744 -14.649 -19.553 -7.070 -1.139 -0.391 F3  OW1 28 
OW1 C18 C18 C 0 1 N N N N N N 20.669 -18.036 -22.594 -2.177 -0.853 1.840  C18 OW1 29 
OW1 C19 C19 C 0 1 N N N N N N 21.456 -17.688 -21.328 -1.465 -2.154 1.463  C19 OW1 30 
OW1 C20 C20 C 0 1 N N N N N N 19.607 -19.077 -22.220 -1.273 -0.023 2.754  C20 OW1 31 
OW1 C21 C21 C 0 1 N N N N N N 21.615 -18.656 -23.620 -3.481 -1.178 2.570  C21 OW1 32 
OW1 C22 C22 C 0 1 N N N N N N 20.002 -14.165 -27.572 -0.399 3.710  -1.161 C22 OW1 33 
OW1 C23 C23 C 0 1 N N N N N N 20.366 -13.235 -28.712 -0.296 5.118  -1.749 C23 OW1 34 
OW1 C24 C24 C 0 1 N N N N N N 19.027 -13.544 -26.593 -1.478 2.816  -1.776 C24 OW1 35 
OW1 H1  H1  H 0 1 N N N N N N 19.161 -21.111 -30.541 3.620  3.022  0.542  H1  OW1 36 
OW1 H4  H4  H 0 1 N N N N N N 19.015 -20.418 -28.292 3.948  -0.122 1.585  H4  OW1 37 
OW1 H5  H5  H 0 1 N N N N N N 16.062 -20.250 -27.552 5.737  0.322  -0.846 H5  OW1 38 
OW1 H6  H6  H 0 1 N N N N N N 16.935 -21.752 -28.007 6.246  -0.507 0.644  H6  OW1 39 
OW1 H7  H7  H 0 1 N N N N N N 17.612 -19.974 -25.625 3.901  -1.367 -1.124 H7  OW1 40 
OW1 H8  H8  H 0 1 N N N N N N 18.895 -22.477 -26.656 5.022  -2.287 1.542  H8  OW1 41 
OW1 H9  H9  H 0 1 N N N N N N 19.564 -21.168 -25.624 3.346  -2.417 0.911  H9  OW1 42 
OW1 H10 H10 H 0 1 N N N N N N 18.750 -23.661 -24.664 5.124  -4.547 0.876  H10 OW1 43 
OW1 H11 H11 H 0 1 N N N N N N 18.818 -22.170 -23.665 3.839  -4.340 -0.351 H11 OW1 44 
OW1 H12 H12 H 0 1 N N N N N N 16.394 -23.229 -23.936 6.319  -4.361 -1.308 H12 OW1 45 
OW1 H13 H13 H 0 1 N N N N N N 17.298 -18.007 -27.860 3.450  1.082  -1.042 H13 OW1 46 
OW1 H14 H14 H 0 1 N N N N N N 18.101 -16.281 -26.827 1.006  1.014  -1.511 H14 OW1 47 
OW1 H15 H15 H 0 1 N N N N N N 20.019 -15.973 -28.906 1.851  3.541  -0.876 H15 OW1 48 
OW1 H16 H16 H 0 1 N N N N N N 22.055 -15.055 -27.683 0.083  4.422  0.953  H16 OW1 49 
OW1 H17 H17 H 0 1 N N N N N N 21.970 -16.317 -25.580 -0.072 2.090  1.952  H17 OW1 50 
OW1 H18 H18 H 0 1 N N N N N N 21.129 -14.845 -24.987 -1.700 2.373  1.262  H18 OW1 51 
OW1 H19 H19 H 0 1 N N N N N N 20.916 -16.062 -23.387 -2.905 0.913  0.844  H19 OW1 52 
OW1 H20 H20 H 0 1 N N N N N N 18.344 -16.529 -21.952 -3.150 -1.371 -0.959 H20 OW1 53 
OW1 H21 H21 H 0 1 N N N N N N 20.778 -17.241 -20.586 -0.536 -1.922 0.943  H21 OW1 54 
OW1 H22 H22 H 0 1 N N N N N N 21.904 -18.602 -20.912 -1.243 -2.721 2.367  H22 OW1 55 
OW1 H23 H23 H 0 1 N N N N N N 22.252 -16.971 -21.577 -2.109 -2.745 0.812  H23 OW1 56 
OW1 H24 H24 H 0 1 N N N N N N 18.916 -18.647 -21.480 -1.808 0.870  3.080  H24 OW1 57 
OW1 H25 H25 H 0 1 N N N N N N 19.046 -19.368 -23.120 -0.993 -0.617 3.624  H25 OW1 58 
OW1 H26 H26 H 0 1 N N N N N N 20.098 -19.963 -21.791 -0.376 0.270  2.209  H26 OW1 59 
OW1 H27 H27 H 0 1 N N N N N N 22.045 -19.582 -23.211 -4.125 -1.769 1.919  H27 OW1 60 
OW1 H28 H28 H 0 1 N N N N N N 21.058 -18.886 -24.540 -3.259 -1.745 3.474  H28 OW1 61 
OW1 H29 H29 H 0 1 N N N N N N 22.424 -17.946 -23.849 -3.988 -0.251 2.838  H29 OW1 62 
OW1 H30 H30 H 0 1 N N N N N N 20.410 -12.200 -28.342 0.341  5.097  -2.633 H30 OW1 63 
OW1 H31 H31 H 0 1 N N N N N N 21.347 -13.520 -29.119 -1.290 5.470  -2.026 H31 OW1 64 
OW1 H32 H32 H 0 1 N N N N N N 19.605 -13.310 -29.503 0.134  5.791  -1.008 H32 OW1 65 
OW1 H33 H33 H 0 1 N N N N N N 18.802 -14.264 -25.792 -1.781 2.061  -1.051 H33 OW1 66 
OW1 H34 H34 H 0 1 N N N N N N 19.473 -12.638 -26.157 -2.340 3.424  -2.050 H34 OW1 67 
OW1 H35 H35 H 0 1 N N N N N N 18.098 -13.279 -27.119 -1.081 2.327  -2.665 H35 OW1 68 
OW1 H2  H2  H 0 1 N N N N N N 17.869 -20.578 -31.784 4.951  3.792  1.607  H2  OW1 69 
OW1 H3  H3  H 0 1 N Y N N N N 16.661 -19.459 -30.073 5.868  1.625  2.027  H3  OW1 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OW1 C1  C2  DOUB N N 1  
OW1 C2  C3  SING N N 2  
OW1 C23 C22 SING N N 3  
OW1 C3  N2  SING N N 4  
OW1 C3  C4  SING N N 5  
OW1 C11 C22 SING N N 6  
OW1 C11 C12 SING N N 7  
OW1 C11 C10 SING N N 8  
OW1 N2  C9  SING N N 9  
OW1 C22 C12 SING N N 10 
OW1 C22 C24 SING N N 11 
OW1 C4  C5  SING N N 12 
OW1 C9  O2  DOUB N N 13 
OW1 C9  C10 SING N N 14 
OW1 C12 C13 SING N N 15 
OW1 C10 N3  SING N N 16 
OW1 C5  C6  SING N N 17 
OW1 C5  C8  SING N N 18 
OW1 C6  C7  SING N N 19 
OW1 C13 N3  SING N N 20 
OW1 N3  C14 SING N N 21 
OW1 O1  C8  DOUB N N 22 
OW1 C8  N1  SING N N 23 
OW1 C7  N1  SING N N 24 
OW1 O3  C14 DOUB N N 25 
OW1 C14 C15 SING N N 26 
OW1 C21 C18 SING N N 27 
OW1 C15 C18 SING N N 28 
OW1 C15 N4  SING N N 29 
OW1 C18 C20 SING N N 30 
OW1 C18 C19 SING N N 31 
OW1 N4  C16 SING N N 32 
OW1 O4  C16 DOUB N N 33 
OW1 C16 C17 SING N N 34 
OW1 F1  C17 SING N N 35 
OW1 F2  C17 SING N N 36 
OW1 C17 F3  SING N N 37 
OW1 C1  H1  SING N N 38 
OW1 C3  H4  SING N N 39 
OW1 C4  H5  SING N N 40 
OW1 C4  H6  SING N N 41 
OW1 C5  H7  SING N N 42 
OW1 C6  H8  SING N N 43 
OW1 C6  H9  SING N N 44 
OW1 C7  H10 SING N N 45 
OW1 C7  H11 SING N N 46 
OW1 N1  H12 SING N N 47 
OW1 N2  H13 SING N N 48 
OW1 C10 H14 SING N N 49 
OW1 C11 H15 SING N N 50 
OW1 C12 H16 SING N N 51 
OW1 C13 H17 SING N N 52 
OW1 C13 H18 SING N N 53 
OW1 C15 H19 SING N N 54 
OW1 N4  H20 SING N N 55 
OW1 C19 H21 SING N N 56 
OW1 C19 H22 SING N N 57 
OW1 C19 H23 SING N N 58 
OW1 C20 H24 SING N N 59 
OW1 C20 H25 SING N N 60 
OW1 C20 H26 SING N N 61 
OW1 C21 H27 SING N N 62 
OW1 C21 H28 SING N N 63 
OW1 C21 H29 SING N N 64 
OW1 C23 H30 SING N N 65 
OW1 C23 H31 SING N N 66 
OW1 C23 H32 SING N N 67 
OW1 C24 H33 SING N N 68 
OW1 C24 H34 SING N N 69 
OW1 C24 H35 SING N N 70 
OW1 C1  H2  SING N N 71 
OW1 C2  H3  SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OW1 InChI            InChI                1.06    "InChI=1S/C24H35F3N4O4/c1-7-13(10-12-8-9-28-18(12)32)29-19(33)16-15-14(23(15,5)6)11-31(16)20(34)17(22(2,3)4)30-21(35)24(25,26)27/h7,12-17H,1,8-11H2,2-6H3,(H,28,32)(H,29,33)(H,30,35)/t12-,13+,14-,15-,16-,17+/m0/s1" 
OW1 InChIKey         InChI                1.06    TWWPGJPLBPBRGX-FHULIHMCSA-N                                                                                                                                                                                           
OW1 SMILES_CANONICAL CACTVS               3.385   "CC(C)(C)[C@H](NC(=O)C(F)(F)F)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=C)C2(C)C"                                                                                                                     
OW1 SMILES           CACTVS               3.385   "CC(C)(C)[CH](NC(=O)C(F)(F)F)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCNC3=O)C=C)C2(C)C"                                                                                                                              
OW1 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)[C@H](C(C)(C)C)NC(=O)C(F)(F)F)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=C)C"                                                                                                                   
OW1 SMILES           "OpenEye OEToolkits" 3.1.0.0 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)C(F)(F)F)C(=O)NC(CC3CCNC3=O)C=C)C"                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           OW1 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(1~{R},2~{S},5~{S})-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-6,6-dimethyl-~{N}-[(2~{S})-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]but-3-en-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      OW1 
_pdbx_chem_comp_synonyms.name         "(1~{R},2~{S},5~{S})-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-6,6-dimethyl-~{N}-[(2~{S})-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]but-3-en-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OW1 "Create component"     2022-09-22 PDBE 
OW1 "Modify aromatic_flag" 2022-09-27 PDBE 
OW1 "Initial release"      2023-02-22 RCSB 
OW1 "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            OW1 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C2 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
