data_ND1
# 
_chem_comp.id                                    ND1 
_chem_comp.name                                  "(2Z)-N,N-dimethyl-4-{[2-({5-[(1Z)-4,4,4-trifluoro-1-(3-fluoro-2H-indazol-5-yl)-2-phenylbut-1-en-1-yl]pyridin-2-yl}oxy)ethyl]amino}but-2-enamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H29 F4 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-05-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        567.577 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ND1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6OWC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ND1 C10 C1  C 0 1 Y N N N N N 36.142 2.425  -7.993  -0.585  -0.462 2.057  C10 ND1 1  
ND1 C11 C2  C 0 1 Y N N N N N 35.695 1.517  -8.918  0.784   -0.300 1.975  C11 ND1 2  
ND1 C1  C3  C 0 1 N N N N N N 38.721 1.939  -0.589  -11.294 0.167  -1.619 C1  ND1 3  
ND1 N1  N1  N 0 1 N N N N N N 39.931 2.670  -1.060  -10.369 1.088  -0.955 N1  ND1 4  
ND1 C2  C4  C 0 1 N N N N N N 41.102 2.879  -0.167  -10.550 2.535  -1.094 C2  ND1 5  
ND1 C3  C5  C 0 1 N N N N N N 39.899 3.152  -2.346  -9.351  0.604  -0.215 C3  ND1 6  
ND1 O1  O1  O 0 1 N N N N N N 38.933 2.954  -3.087  -9.201  -0.597 -0.099 O1  ND1 7  
ND1 C4  C6  C 0 1 N N N N N N 41.157 3.866  -2.933  -8.422  1.530  0.452  C4  ND1 8  
ND1 C5  C7  C 0 1 N N N N N N 40.829 5.067  -3.852  -7.339  1.059  1.062  C5  ND1 9  
ND1 C6  C8  C 0 1 N N N N N N 39.960 4.812  -5.126  -6.806  -0.306 0.706  C6  ND1 10 
ND1 N2  N2  N 0 1 N N N N N N 38.632 5.265  -4.763  -5.366  -0.213 0.431  N2  ND1 11 
ND1 C7  C9  C 0 1 N N N N N N 37.638 5.636  -5.748  -4.812  -1.527 0.079  C7  ND1 12 
ND1 C8  C10 C 0 1 N N N N N N 36.869 4.405  -6.247  -3.314  -1.390 -0.201 C8  ND1 13 
ND1 O2  O2  O 0 1 N N N N N N 37.762 3.931  -7.277  -2.639  -1.003 0.998  O2  ND1 14 
ND1 C9  C11 C 0 1 Y N N N N N 37.302 3.077  -8.210  -1.295  -0.838 0.922  C9  ND1 15 
ND1 N3  N3  N 0 1 Y N N N N N 38.096 2.763  -9.289  -0.678  -1.036 -0.231 N3  ND1 16 
ND1 C13 C12 C 0 1 Y N N N N N 37.618 1.821  -10.268 0.626   -0.887 -0.356 C13 ND1 17 
ND1 C12 C13 C 0 1 Y N N N N N 36.384 1.147  -10.019 1.406   -0.518 0.739  C12 ND1 18 
ND1 C14 C14 C 0 1 N N N N N N 35.814 0.262  -10.998 2.870   -0.352 0.596  C14 ND1 19 
ND1 C15 C15 C 0 1 N N N N N N 36.608 -0.822 -11.569 3.648   -1.423 0.301  C15 ND1 20 
ND1 C16 C16 C 0 1 N N N N N N 36.146 -1.594 -12.782 5.119   -1.234 0.031  C16 ND1 21 
ND1 C17 C17 C 0 1 N N N N N N 35.851 -3.089 -12.512 5.344   -1.071 -1.474 C17 ND1 22 
ND1 F2  F1  F 0 1 N N N N N N 35.012 -3.232 -11.537 6.686   -0.756 -1.713 F2  ND1 23 
ND1 F3  F2  F 0 1 N N N N N N 35.312 -3.472 -13.717 5.023   -2.267 -2.125 F3  ND1 24 
ND1 F1  F3  F 0 1 N N N N N N 36.958 -3.709 -12.230 4.530   -0.042 -1.959 F1  ND1 25 
ND1 C18 C18 C 0 1 Y N N N N N 37.823 -1.257 -10.980 3.058   -2.768 0.245  C18 ND1 26 
ND1 C19 C19 C 0 1 Y N N N N N 37.759 -1.691 -9.667  2.755   -3.353 -0.989 C19 ND1 27 
ND1 C20 C20 C 0 1 Y N N N N N 38.924 -2.150 -9.048  2.201   -4.615 -1.033 C20 ND1 28 
ND1 C21 C21 C 0 1 Y N N N N N 40.109 -2.185 -9.747  1.946   -5.303 0.140  C21 ND1 29 
ND1 C22 C22 C 0 1 Y N N N N N 40.193 -1.709 -11.051 2.242   -4.732 1.366  C22 ND1 30 
ND1 C23 C23 C 0 1 Y N N N N N 39.014 -1.269 -11.663 2.801   -3.473 1.426  C23 ND1 31 
ND1 C24 C24 C 0 1 Y N N N N N 34.530 0.651  -11.485 3.483   0.982  0.774  C24 ND1 32 
ND1 C30 C25 C 0 1 Y N N N N N 33.375 -0.207 -11.547 3.259   1.962  -0.172 C30 ND1 33 
ND1 C29 C26 C 0 1 Y N N N N N 32.165 0.283  -11.968 3.843   3.231  -0.002 C29 ND1 34 
ND1 C28 C27 C 0 1 Y N N N N N 30.929 -0.283 -12.139 3.834   4.415  -0.727 C28 ND1 35 
ND1 F4  F4  F 0 1 N N N N N N 30.632 -1.618 -11.886 3.184   4.630  -1.892 F4  ND1 36 
ND1 N5  N4  N 0 1 Y N N N N N 30.021 0.550  -12.580 4.584   5.306  -0.064 N5  ND1 37 
ND1 N4  N5  N 0 1 Y N N N N N 30.729 1.726  -12.663 5.097   4.727  1.102  N4  ND1 38 
ND1 C27 C28 C 0 1 Y N N N N N 32.008 1.560  -12.295 4.679   3.477  1.184  C27 ND1 39 
ND1 C26 C29 C 0 1 Y N N N N N 33.057 2.429  -12.217 4.869   2.431  2.114  C26 ND1 40 
ND1 C25 C30 C 0 1 Y N N N N N 34.289 1.977  -11.823 4.281   1.230  1.908  C25 ND1 41 
ND1 H1  H1  H 0 1 N N N N N N 35.569 2.616  -7.098  -1.098  -0.303 2.994  H1  ND1 42 
ND1 H2  H2  H 0 1 N N N N N N 34.727 1.067  -8.755  1.360   -0.013 2.842  H2  ND1 43 
ND1 H3  H3  H 0 1 N N N N N N 38.873 1.607  0.449   -10.920 -0.066 -2.616 H3  ND1 44 
ND1 H4  H4  H 0 1 N N N N N N 37.848 2.607  -0.636  -11.373 -0.751 -1.037 H4  ND1 45 
ND1 H5  H5  H 0 1 N N N N N N 38.548 1.063  -1.232  -12.276 0.633  -1.699 H5  ND1 46 
ND1 H6  H6  H 0 1 N N N N N N 40.908 2.410  0.809   -11.198 2.899  -0.296 H6  ND1 47 
ND1 H7  H7  H 0 1 N N N N N N 41.995 2.425  -0.621  -9.581  3.030  -1.029 H7  ND1 48 
ND1 H8  H8  H 0 1 N N N N N N 41.270 3.957  -0.029  -11.006 2.753  -2.060 H8  ND1 49 
ND1 H9  H9  H 0 1 N N N N N N 42.167 3.550  -2.717  -8.621  2.591  0.447  H9  ND1 50 
ND1 H11 H11 H 0 1 N N N N N N 41.192 6.057  -3.619  -6.840  1.654  1.813  H11 ND1 51 
ND1 H13 H13 H 0 1 N N N N N N 39.949 3.742  -5.380  -6.973  -0.990 1.538  H13 ND1 52 
ND1 H14 H14 H 0 1 N N N N N N 40.346 5.387  -5.980  -7.322  -0.677 -0.179 H14 ND1 53 
ND1 H15 H15 H 0 1 N N N N N N 38.762 6.070  -4.184  -4.873  0.190  1.214  H15 ND1 54 
ND1 H17 H17 H 0 1 N N N N N N 38.139 6.117  -6.601  -4.965  -2.219 0.906  H17 ND1 55 
ND1 H18 H18 H 0 1 N N N N N N 36.928 6.343  -5.294  -5.314  -1.907 -0.811 H18 ND1 56 
ND1 H19 H19 H 0 1 N N N N N N 35.886 4.680  -6.658  -2.920  -2.345 -0.547 H19 ND1 57 
ND1 H20 H20 H 0 1 N N N N N N 36.737 3.659  -5.450  -3.155  -0.632 -0.968 H20 ND1 58 
ND1 H21 H21 H 0 1 N N N N N N 38.180 1.629  -11.170 1.095   -1.058 -1.314 H21 ND1 59 
ND1 H24 H24 H 0 1 N N N N N N 36.931 -1.531 -13.550 5.472   -0.343 0.550  H24 ND1 60 
ND1 H25 H25 H 0 1 N N N N N N 35.226 -1.124 -13.159 5.669   -2.104 0.389  H25 ND1 61 
ND1 H26 H26 H 0 1 N N N N N N 36.822 -1.675 -9.129  2.953   -2.816 -1.905 H26 ND1 62 
ND1 H27 H27 H 0 1 N N N N N N 38.895 -2.478 -8.019  1.967   -5.067 -1.985 H27 ND1 63 
ND1 H28 H28 H 0 1 N N N N N N 40.991 -2.590 -9.274  1.512   -6.291 0.100  H28 ND1 64 
ND1 H29 H29 H 0 1 N N N N N N 41.137 -1.680 -11.574 2.039   -5.275 2.277  H29 ND1 65 
ND1 H30 H30 H 0 1 N N N N N N 39.041 -0.933 -12.689 3.032   -3.028 2.383  H30 ND1 66 
ND1 H31 H31 H 0 1 N N N N N N 33.462 -1.244 -11.260 2.642   1.758  -1.035 H31 ND1 67 
ND1 H32 H32 H 0 1 N N N N N N 29.061 0.376  -12.800 4.748   6.218  -0.351 H32 ND1 68 
ND1 H33 H33 H 0 1 N N N N N N 32.917 3.471  -12.465 5.479   2.591  2.991  H33 ND1 69 
ND1 H34 H34 H 0 1 N N N N N N 35.107 2.681  -11.773 4.434   0.439  2.627  H34 ND1 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ND1 F3  C17 SING N N 1  
ND1 C16 C17 SING N N 2  
ND1 C16 C15 SING N N 3  
ND1 N4  N5  SING Y N 4  
ND1 N4  C27 DOUB Y N 5  
ND1 N5  C28 SING Y N 6  
ND1 C17 F1  SING N N 7  
ND1 C17 F2  SING N N 8  
ND1 C27 C26 SING Y N 9  
ND1 C27 C29 SING Y N 10 
ND1 C26 C25 DOUB Y N 11 
ND1 C28 C29 DOUB Y N 12 
ND1 C28 F4  SING N N 13 
ND1 C29 C30 SING Y N 14 
ND1 C25 C24 SING Y N 15 
ND1 C23 C22 DOUB Y N 16 
ND1 C23 C18 SING Y N 17 
ND1 C15 C14 DOUB N Z 18 
ND1 C15 C18 SING N N 19 
ND1 C30 C24 DOUB Y N 20 
ND1 C24 C14 SING N N 21 
ND1 C22 C21 SING Y N 22 
ND1 C14 C12 SING N N 23 
ND1 C18 C19 DOUB Y N 24 
ND1 C13 C12 DOUB Y N 25 
ND1 C13 N3  SING Y N 26 
ND1 C12 C11 SING Y N 27 
ND1 C21 C20 DOUB Y N 28 
ND1 C19 C20 SING Y N 29 
ND1 N3  C9  DOUB Y N 30 
ND1 C11 C10 DOUB Y N 31 
ND1 C9  C10 SING Y N 32 
ND1 C9  O2  SING N N 33 
ND1 O2  C8  SING N N 34 
ND1 C8  C7  SING N N 35 
ND1 C7  N2  SING N N 36 
ND1 C6  N2  SING N N 37 
ND1 C6  C5  SING N N 38 
ND1 C5  C4  DOUB N Z 39 
ND1 O1  C3  DOUB N N 40 
ND1 C4  C3  SING N N 41 
ND1 C3  N1  SING N N 42 
ND1 N1  C1  SING N N 43 
ND1 N1  C2  SING N N 44 
ND1 C10 H1  SING N N 45 
ND1 C11 H2  SING N N 46 
ND1 C1  H3  SING N N 47 
ND1 C1  H4  SING N N 48 
ND1 C1  H5  SING N N 49 
ND1 C2  H6  SING N N 50 
ND1 C2  H7  SING N N 51 
ND1 C2  H8  SING N N 52 
ND1 C4  H9  SING N N 53 
ND1 C5  H11 SING N N 54 
ND1 C6  H13 SING N N 55 
ND1 C6  H14 SING N N 56 
ND1 N2  H15 SING N N 57 
ND1 C7  H17 SING N N 58 
ND1 C7  H18 SING N N 59 
ND1 C8  H19 SING N N 60 
ND1 C8  H20 SING N N 61 
ND1 C13 H21 SING N N 62 
ND1 C16 H24 SING N N 63 
ND1 C16 H25 SING N N 64 
ND1 C19 H26 SING N N 65 
ND1 C20 H27 SING N N 66 
ND1 C21 H28 SING N N 67 
ND1 C22 H29 SING N N 68 
ND1 C23 H30 SING N N 69 
ND1 C30 H31 SING N N 70 
ND1 N5  H32 SING N N 71 
ND1 C26 H33 SING N N 72 
ND1 C25 H34 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ND1 SMILES           ACDLabs              12.01 "c1cc(cnc1OCCNC[C@H]=[C@H]C(N(C)C)=O)\C(=C(/c2ccccc2)CC(F)(F)F)c4cc3c(F)nnc3cc4"                                                                                                                               
ND1 InChI            InChI                1.03  "InChI=1S/C30H29F4N5O2/c1-39(2)27(40)9-6-14-35-15-16-41-26-13-11-22(19-36-26)28(21-10-12-25-23(17-21)29(31)38-37-25)24(18-30(32,33)34)20-7-4-3-5-8-20/h3-13,17,19,35H,14-16,18H2,1-2H3,(H,37,38)/b9-6?,28-24-" 
ND1 InChIKey         InChI                1.03  JPFTZIJTXCHJNE-LTZHIIGJSA-N                                                                                                                                                                                    
ND1 SMILES_CANONICAL CACTVS               3.385 "CN(C)C(=O)\C=C/CNCCOc1ccc(cn1)/C(=C(/CC(F)(F)F)c2ccccc2)c3ccc4n[nH]c(F)c4c3"                                                                                                                                  
ND1 SMILES           CACTVS               3.385 "CN(C)C(=O)C=CCNCCOc1ccc(cn1)C(=C(CC(F)(F)F)c2ccccc2)c3ccc4n[nH]c(F)c4c3"                                                                                                                                      
ND1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)C=CCNCCOc1ccc(cn1)/C(=C(/CC(F)(F)F)\c2ccccc2)/c3ccc4c(c3)c([nH]n4)F"                                                                                                                                
ND1 SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)C=CCNCCOc1ccc(cn1)C(=C(CC(F)(F)F)c2ccccc2)c3ccc4c(c3)c([nH]n4)F"                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ND1 "SYSTEMATIC NAME" ACDLabs              12.01 "(2Z)-N,N-dimethyl-4-{[2-({5-[(1Z)-4,4,4-trifluoro-1-(3-fluoro-2H-indazol-5-yl)-2-phenylbut-1-en-1-yl]pyridin-2-yl}oxy)ethyl]amino}but-2-enamide"          
ND1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N},~{N}-dimethyl-4-[2-[5-[(~{Z})-4,4,4-tris(fluoranyl)-1-(3-fluoranyl-2~{H}-indazol-5-yl)-2-phenyl-but-1-enyl]pyridin-2-yl]oxyethylamino]but-2-enamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ND1 "Create component" 2019-05-10 RCSB 
ND1 "Initial release"  2019-06-19 RCSB 
ND1 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            ND1 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C5 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
