data_MK1
#

_chem_comp.id                                   MK1
_chem_comp.name                                 
;N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY
BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C36 H47 N5 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        INDINAVIR
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       613.789
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    MK1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1HSG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MK1  N1    N1    N  0  1  N  N  N   9.280  23.763   3.004   0.011   0.044   5.540  N1    MK1   1  
MK1  C1    C1    C  0  1  N  N  N   9.498  23.983   4.459   1.228  -0.429   4.871  C1    MK1   2  
MK1  C2    C2    C  0  1  N  N  S  10.591  24.905   4.962   1.387   0.283   3.527  C2    MK1   3  
MK1  C3    C3    C  0  1  N  N  N  10.591  24.864   6.466   2.675  -0.151   2.878  C3    MK1   4  
MK1  O1    O1    O  0  1  N  N  N  10.937  23.849   7.057   2.654  -0.693   1.793  O1    MK1   5  
MK1  N2    N2    N  0  1  N  N  N  10.193  25.953   7.094   3.851   0.060   3.502  N2    MK1   6  
MK1  C4    C4    C  0  1  N  N  N  10.145  26.250   8.490   5.103  -0.362   2.871  C4    MK1   7  
MK1  C5    C5    C  0  1  N  N  N   9.379  27.577   8.641   6.279  -0.006   3.782  C5    MK1   8  
MK1  C6    C6    C  0  1  N  N  N  11.398  26.347   9.074   5.264   0.352   1.528  C6    MK1   9  
MK1  C7    C7    C  0  1  N  N  N   9.364  25.283   9.268   5.073  -1.875   2.643  C7    MK1  10  
MK1  N3    N3    N  0  1  N  N  N  11.819  24.282   4.355   0.259  -0.056   2.652  N3    MK1  11  
MK1  C8    C8    C  0  1  N  N  N  11.753  23.776   2.961  -0.957   0.418   3.321  C8    MK1  12  
MK1  C9    C9    C  0  1  N  N  N  10.440  23.182   2.493  -1.116  -0.294   4.664  C9    MK1  13  
MK1  C10   C10   C  0  1  N  N  N  13.083  24.963   4.552   0.413   0.750   1.434  C10   MK1  14  
MK1  C11   C11   C  0  1  N  N  S  14.203  24.064   5.078  -0.560   0.250   0.365  C11   MK1  15  
MK1  O2    O2    O  0  1  N  N  N  15.242  24.884   4.634  -1.901   0.511   0.783  O2    MK1  16  
MK1  C12   C12   C  0  1  N  N  N  14.440  23.761   6.569  -0.286   0.977  -0.953  C12   MK1  17  
MK1  C13   C13   C  0  1  N  N  R  15.573  22.821   7.005  -1.135   0.355  -2.063  C13   MK1  18  
MK1  C14   C14   C  0  1  N  N  N  15.644  22.664   8.534  -2.611   0.677  -1.818  C14   MK1  19  
MK1  C15   C15   C  0  1  Y  N  N  16.733  21.750   8.961  -3.450   0.033  -2.892  C15   MK1  20  
MK1  C16   C16   C  0  1  Y  N  N  18.058  21.916   8.553  -3.835  -1.288  -2.769  C16   MK1  21  
MK1  C17   C17   C  0  1  Y  N  N  19.037  21.016   8.947  -4.605  -1.878  -3.753  C17   MK1  22  
MK1  C18   C18   C  0  1  Y  N  N  18.673  19.939   9.758  -4.991  -1.146  -4.860  C18   MK1  23  
MK1  C19   C19   C  0  1  Y  N  N  17.347  19.773  10.176  -4.607   0.175  -4.983  C19   MK1  24  
MK1  C20   C20   C  0  1  Y  N  N  16.374  20.687   9.772  -3.841   0.767  -3.996  C20   MK1  25  
MK1  C21   C21   C  0  1  N  N  N  15.447  21.440   6.373  -0.712   0.920  -3.395  C21   MK1  26  
MK1  O3    O3    O  0  1  N  N  N  14.367  20.831   6.397  -0.436   2.097  -3.495  O3    MK1  27  
MK1  N4    N4    N  0  1  N  N  N  16.583  20.913   5.924  -0.640   0.117  -4.475  N4    MK1  28  
MK1  C22   C22   C  0  1  N  N  S  16.692  19.500   5.604  -0.121   0.638  -5.742  C22   MK1  29  
MK1  C23   C23   C  0  1  N  N  R  18.067  18.945   5.936  -0.719  -0.145  -6.929  C23   MK1  30  
MK1  O4    O4    O  0  1  N  N  N  19.061  19.938   5.729  -1.078  -1.470  -6.534  O4    MK1  31  
MK1  C24   C24   C  0  1  N  N  N  18.226  17.726   5.057   0.451  -0.167  -7.935  C24   MK1  32  
MK1  C25   C25   C  0  1  Y  N  N  17.476  17.904   3.760   1.702  -0.050  -7.090  C25   MK1  33  
MK1  C26   C26   C  0  1  Y  N  N  17.500  17.363   2.496   3.023  -0.327  -7.399  C26   MK1  34  
MK1  C27   C27   C  0  1  Y  N  N  16.613  17.872   1.541   4.012  -0.143  -6.453  C27   MK1  35  
MK1  C28   C28   C  0  1  Y  N  N  15.722  18.906   1.865   3.683   0.320  -5.193  C28   MK1  36  
MK1  C29   C29   C  0  1  Y  N  N  15.683  19.479   3.129   2.366   0.597  -4.882  C29   MK1  37  
MK1  C30   C30   C  0  1  Y  N  N  16.504  19.061   4.128   1.373   0.414  -5.829  C30   MK1  38  
MK1  C31   C31   C  0  1  N  N  N   8.033  23.100   2.604  -0.142  -0.762   6.758  C31   MK1  39  
MK1  C32   C32   C  0  1  Y  N  N   6.666  23.739   2.876  -1.380  -0.324   7.498  C32   MK1  40  
MK1  C33   C33   C  0  1  Y  N  N   6.158  24.808   2.124  -1.308   0.670   8.454  C33   MK1  41  
MK1  N5    N5    N  0  1  Y  N  N   4.911  25.430   2.300  -2.388   1.062   9.102  N5    MK1  42  
MK1  C34   C34   C  0  1  Y  N  N   4.207  24.839   3.348  -3.568   0.519   8.875  C34   MK1  43  
MK1  C35   C35   C  0  1  Y  N  N   4.654  23.774   4.136  -3.716  -0.485   7.937  C35   MK1  44  
MK1  C36   C36   C  0  1  Y  N  N   5.905  23.211   3.897  -2.604  -0.919   7.232  C36   MK1  45  
MK1  H11A  1H1   H  0  0  N  N  N   8.532  24.318   4.904   1.155  -1.504   4.704  H11A  MK1  46  
MK1  H12   2H1   H  0  1  N  N  N   9.639  22.987   4.940   2.094  -0.217   5.499  H12   MK1  47  
MK1  H2    H2    H  0  1  N  N  N  10.493  25.982   4.690   1.409   1.361   3.689  H2    MK1  48  
MK1  HN2   HN2   H  0  1  N  N  N   9.884  26.651   6.417   3.867   0.494   4.370  HN2   MK1  49  
MK1  H51   1H5   H  0  1  N  N  N   9.341  27.808   9.731   7.211  -0.321   3.312  H51   MK1  50  
MK1  H52   2H5   H  0  1  N  N  N   9.811  28.404   8.031   6.300   1.071   3.944  H52   MK1  51  
MK1  H53   3H5   H  0  1  N  N  N   8.372  27.558   8.161   6.165  -0.515   4.739  H53   MK1  52  
MK1  H61   1H6   H  0  1  N  N  N  11.360  26.578  10.164   5.285   1.430   1.690  H61   MK1  53  
MK1  H62   2H6   H  0  1  N  N  N  11.994  25.424   8.886   6.195   0.037   1.058  H62   MK1  54  
MK1  H63   3H6   H  0  1  N  N  N  12.030  27.089   8.533   4.425   0.098   0.878  H63   MK1  55  
MK1  H71   1H7   H  0  1  N  N  N   9.326  25.514  10.358   4.959  -2.384   3.600  H71   MK1  56  
MK1  H72   2H7   H  0  1  N  N  N   8.335  25.180   8.850   4.235  -2.128   1.994  H72   MK1  57  
MK1  H73   3H7   H  0  1  N  N  N   9.737  24.246   9.097   6.005  -2.190   2.173  H73   MK1  58  
MK1  H81   1H8   H  0  1  N  N  N  12.061  24.586   2.259  -1.823   0.207   2.693  H81   MK1  59  
MK1  H82   2H8   H  0  1  N  N  N  12.571  23.035   2.798  -0.885   1.493   3.488  H82   MK1  60  
MK1  H91   1H9   H  0  1  N  N  N  10.430  22.085   2.693  -1.139  -1.372   4.502  H91   MK1  61  
MK1  H92   2H9   H  0  1  N  N  N  10.402  23.184   1.378  -2.048   0.020   5.134  H92   MK1  62  
MK1  H101  1H10  H  0  0  N  N  N  13.401  25.474   3.613   0.199   1.794   1.660  H101  MK1  63  
MK1  H102  2H10  H  0  0  N  N  N  12.949  25.849   5.215   1.435   0.660   1.065  H102  MK1  64  
MK1  H11   H11   H  0  1  N  N  N  14.024  23.013   4.749  -0.425  -0.821   0.223  H11   MK1  65  
MK1  HO2   HO2   H  0  1  N  N  N  15.937  24.325   4.960  -1.977   1.468   0.896  HO2   MK1  66  
MK1  H121  1H12  H  0  0  N  N  N  14.564  24.730   7.106  -0.542   2.031  -0.847  H121  MK1  67  
MK1  H122  2H12  H  0  0  N  N  N  13.485  23.382   7.003   0.769   0.883  -1.207  H122  MK1  68  
MK1  H13   H13   H  0  1  N  N  N  16.513  23.301   6.646  -0.995  -0.725  -2.066  H13   MK1  69  
MK1  H141  1H14  H  0  0  N  N  N  15.732  23.655   9.035  -2.909   0.292  -0.843  H141  MK1  70  
MK1  H142  2H14  H  0  0  N  N  N  14.661  22.340   8.950  -2.756   1.757  -1.842  H142  MK1  71  
MK1  H16   H16   H  0  1  N  N  N  18.334  22.769   7.911  -3.533  -1.860  -1.904  H16   MK1  72  
MK1  H17   H17   H  0  1  N  N  N  20.082  21.153   8.622  -4.904  -2.911  -3.657  H17   MK1  73  
MK1  H18   H18   H  0  1  N  N  N  19.440  19.211  10.071  -5.592  -1.608  -5.630  H18   MK1  74  
MK1  H19   H19   H  0  1  N  N  N  17.069  18.923  10.822  -4.909   0.747  -5.848  H19   MK1  75  
MK1  H20   H20   H  0  1  N  N  N  15.325  20.569  10.092  -3.541   1.800  -4.092  H20   MK1  76  
MK1  HN4   HN4   H  0  1  N  N  N  17.351  21.576   5.827  -0.932  -0.805  -4.414  HN4   MK1  77  
MK1  H22   H22   H  0  1  N  N  N  15.845  19.112   6.216  -0.350   1.700  -5.836  H22   MK1  78  
MK1  H23   H23   H  0  1  N  N  N  18.179  18.653   7.006  -1.578   0.379  -7.347  H23   MK1  79  
MK1  HO4   HO4   H  0  1  N  N  N  19.920  19.591   5.936  -1.377  -1.928  -7.331  HO4   MK1  80  
MK1  H241  1H24  H  0  0  N  N  N  19.299  17.478   4.883   0.456  -1.105  -8.490  H241  MK1  81  
MK1  H242  2H24  H  0  0  N  N  N  17.922  16.792   5.585   0.377   0.677  -8.620  H242  MK1  82  
MK1  H26   H26   H  0  1  N  N  N  18.205  16.549   2.256   3.281  -0.689  -8.384  H26   MK1  83  
MK1  H27   H27   H  0  1  N  N  N  16.616  17.453   0.520   5.041  -0.360  -6.697  H27   MK1  84  
MK1  H28   H28   H  0  1  N  N  N  15.025  19.282   1.096   4.454   0.464  -4.451  H28   MK1  85  
MK1  H29   H29   H  0  1  N  N  N  14.974  20.295   3.347   2.109   0.959  -3.898  H29   MK1  86  
MK1  H311  1H31  H  0  0  N  N  N   8.097  22.876   1.513  -0.233  -1.814   6.488  H311  MK1  87  
MK1  H312  2H31  H  0  0  N  N  N   8.029  22.077   3.049   0.730  -0.625   7.397  H312  MK1  88  
MK1  H33   H33   H  0  1  N  N  N   6.801  25.196   1.316  -0.359   1.138   8.667  H33   MK1  89  
MK1  H34   H34   H  0  1  N  N  N   3.208  25.250   3.573  -4.430   0.864   9.428  H34   MK1  90  
MK1  H35   H35   H  0  1  N  N  N   4.019  23.377   4.946  -4.685  -0.925   7.755  H35   MK1  91  
MK1  H36   H36   H  0  1  N  N  N   6.283  22.368   4.500  -2.689  -1.702   6.493  H36   MK1  92  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MK1  N1   C1    SING  N  N   1  
MK1  N1   C9    SING  N  N   2  
MK1  N1   C31   SING  N  N   3  
MK1  C1   C2    SING  N  N   4  
MK1  C1   H11A  SING  N  N   5  
MK1  C1   H12   SING  N  N   6  
MK1  C2   C3    SING  N  N   7  
MK1  C2   N3    SING  N  N   8  
MK1  C2   H2    SING  N  N   9  
MK1  C3   O1    DOUB  N  N  10  
MK1  C3   N2    SING  N  N  11  
MK1  N2   C4    SING  N  N  12  
MK1  N2   HN2   SING  N  N  13  
MK1  C4   C5    SING  N  N  14  
MK1  C4   C6    SING  N  N  15  
MK1  C4   C7    SING  N  N  16  
MK1  C5   H51   SING  N  N  17  
MK1  C5   H52   SING  N  N  18  
MK1  C5   H53   SING  N  N  19  
MK1  C6   H61   SING  N  N  20  
MK1  C6   H62   SING  N  N  21  
MK1  C6   H63   SING  N  N  22  
MK1  C7   H71   SING  N  N  23  
MK1  C7   H72   SING  N  N  24  
MK1  C7   H73   SING  N  N  25  
MK1  N3   C8    SING  N  N  26  
MK1  N3   C10   SING  N  N  27  
MK1  C8   C9    SING  N  N  28  
MK1  C8   H81   SING  N  N  29  
MK1  C8   H82   SING  N  N  30  
MK1  C9   H91   SING  N  N  31  
MK1  C9   H92   SING  N  N  32  
MK1  C10  C11   SING  N  N  33  
MK1  C10  H101  SING  N  N  34  
MK1  C10  H102  SING  N  N  35  
MK1  C11  O2    SING  N  N  36  
MK1  C11  C12   SING  N  N  37  
MK1  C11  H11   SING  N  N  38  
MK1  O2   HO2   SING  N  N  39  
MK1  C12  C13   SING  N  N  40  
MK1  C12  H121  SING  N  N  41  
MK1  C12  H122  SING  N  N  42  
MK1  C13  C14   SING  N  N  43  
MK1  C13  C21   SING  N  N  44  
MK1  C13  H13   SING  N  N  45  
MK1  C14  C15   SING  N  N  46  
MK1  C14  H141  SING  N  N  47  
MK1  C14  H142  SING  N  N  48  
MK1  C15  C16   DOUB  Y  N  49  
MK1  C15  C20   SING  Y  N  50  
MK1  C16  C17   SING  Y  N  51  
MK1  C16  H16   SING  N  N  52  
MK1  C17  C18   DOUB  Y  N  53  
MK1  C17  H17   SING  N  N  54  
MK1  C18  C19   SING  Y  N  55  
MK1  C18  H18   SING  N  N  56  
MK1  C19  C20   DOUB  Y  N  57  
MK1  C19  H19   SING  N  N  58  
MK1  C20  H20   SING  N  N  59  
MK1  C21  O3    DOUB  N  N  60  
MK1  C21  N4    SING  N  N  61  
MK1  N4   C22   SING  N  N  62  
MK1  N4   HN4   SING  N  N  63  
MK1  C22  C23   SING  N  N  64  
MK1  C22  C30   SING  N  N  65  
MK1  C22  H22   SING  N  N  66  
MK1  C23  O4    SING  N  N  67  
MK1  C23  C24   SING  N  N  68  
MK1  C23  H23   SING  N  N  69  
MK1  O4   HO4   SING  N  N  70  
MK1  C24  C25   SING  N  N  71  
MK1  C24  H241  SING  N  N  72  
MK1  C24  H242  SING  N  N  73  
MK1  C25  C26   DOUB  Y  N  74  
MK1  C25  C30   SING  Y  N  75  
MK1  C26  C27   SING  Y  N  76  
MK1  C26  H26   SING  N  N  77  
MK1  C27  C28   DOUB  Y  N  78  
MK1  C27  H27   SING  N  N  79  
MK1  C28  C29   SING  Y  N  80  
MK1  C28  H28   SING  N  N  81  
MK1  C29  C30   DOUB  Y  N  82  
MK1  C29  H29   SING  N  N  83  
MK1  C31  C32   SING  N  N  84  
MK1  C31  H311  SING  N  N  85  
MK1  C31  H312  SING  N  N  86  
MK1  C32  C33   SING  Y  N  87  
MK1  C32  C36   DOUB  Y  N  88  
MK1  C33  N5    DOUB  Y  N  89  
MK1  C33  H33   SING  N  N  90  
MK1  N5   C34   SING  Y  N  91  
MK1  C34  C35   DOUB  Y  N  92  
MK1  C34  H34   SING  N  N  93  
MK1  C35  C36   SING  Y  N  94  
MK1  C35  H35   SING  N  N  95  
MK1  C36  H36   SING  N  N  96  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MK1  SMILES            ACDLabs               10.04  "O=C(NC2c1ccccc1CC2O)C(Cc3ccccc3)CC(O)CN5C(C(=O)NC(C)(C)C)CN(Cc4cnccc4)CC5"  
MK1  SMILES_CANONICAL  CACTVS                3.341  "CC(C)(C)NC(=O)[C@@H]1CN(CCN1C[C@@H](O)C[C@@H](Cc2ccccc2)C(=O)N[C@@H]3[C@H](O)Cc4ccccc34)Cc5cccnc5"  
MK1  SMILES            CACTVS                3.341  "CC(C)(C)NC(=O)[CH]1CN(CCN1C[CH](O)C[CH](Cc2ccccc2)C(=O)N[CH]3[CH](O)Cc4ccccc34)Cc5cccnc5"  
MK1  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC(C)(C)NC(=O)[C@@H]1C[N@@](CC[N@]1C[C@H](C[C@@H](Cc2ccccc2)C(=O)N[C@H]3c4ccccc4C[C@H]3O)O)Cc5cccnc5"  
MK1  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(C)(C)NC(=O)C1CN(CCN1CC(CC(Cc2ccccc2)C(=O)NC3c4ccccc4CC3O)O)Cc5cccnc5"  
MK1  InChI             InChI                 1.03   "InChI=1S/C36H47N5O4/c1-36(2,3)39-35(45)31-24-40(22-26-12-9-15-37-21-26)16-17-41(31)23-29(42)19-28(18-25-10-5-4-6-11-25)34(44)38-33-30-14-8-7-13-27(30)20-32(33)43/h4-15,21,28-29,31-33,42-43H,16-20,22-24H2,1-3H3,(H,38,44)(H,39,45)/t28-,29+,31+,32-,33+/m1/s1"  
MK1  InChIKey          InChI                 1.03   CBVCZFGXHXORBI-PXQQMZJSSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MK1  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2S)-1-[(2S,4R)-4-benzyl-2-hydroxy-5-{[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]amino}-5-oxopentyl]-N-tert-butyl-4-(pyridin-3-ylmethyl)piperazine-2-carboxamide (non-preferred name)"  
MK1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(1S,2S,4R)-N-tert-butyl-1-[(2S,4R)-2-hydroxy-5-[[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]amino]-5-oxo-4-(phenylmethyl)pentyl]-4-(pyridin-3-ylmethyl)piperazine-2-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MK1  "Create component"   1999-07-08  RCSB  
MK1  "Modify descriptor"  2011-06-04  RCSB  
MK1  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     MK1
_pdbx_chem_comp_synonyms.name        INDINAVIR
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
