data_MJ1
# 
_chem_comp.id                                    MJ1 
_chem_comp.name                                  "{(4Z)-2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-[(2,3-difluoro-4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C15 H15 F2 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               Thr,Tyr,Gly 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-04-02 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        355.294 
_chem_comp.one_letter_code                       TYG 
_chem_comp.three_letter_code                     MJ1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6OGC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MJ1 C1   C1  C 0 1 N N N Y N N 49.088 1.528  62.050 1.806  0.394  0.061  C1  MJ1 1  
MJ1 C2   C2  C 0 1 N N N Y N N 47.608 3.212  61.759 1.376  -1.649 0.767  C2  MJ1 2  
MJ1 C3   C3  C 0 1 N N N Y N Y 47.229 1.212  59.158 4.272  -1.629 -0.795 C3  MJ1 3  
MJ1 CB1  CB1 C 0 1 N N R N N N 50.223 -0.521 62.941 2.772  2.549  0.817  CB1 MJ1 4  
MJ1 CB2  CB2 C 0 1 N N N N N N 47.514 3.942  64.101 -1.160 -1.357 0.721  CB2 MJ1 5  
MJ1 CG1  CG1 C 0 1 N N N N N N 51.172 -1.662 62.642 3.457  3.835  0.349  CG1 MJ1 6  
MJ1 OG1  OG1 O 0 1 N N N N N N 50.717 0.220  64.058 1.495  2.866  1.374  OG1 MJ1 7  
MJ1 CG2  CG2 C 0 1 Y N N N N N 47.934 4.076  65.437 -2.295 -0.523 0.322  CG2 MJ1 8  
MJ1 CD1  CD1 C 0 1 Y N N N N N 48.699 3.110  66.211 -2.114 0.849  0.094  CD1 MJ1 9  
MJ1 CD2  CD2 C 0 1 Y N N N N N 47.642 5.277  66.129 -3.568 -1.094 0.161  CD2 MJ1 10 
MJ1 CE1  CE1 C 0 1 Y N N N N N 49.068 3.295  67.533 -3.184 1.629  -0.280 CE1 MJ1 11 
MJ1 CE2  CE2 C 0 1 Y N N N N N 48.013 5.487  67.433 -4.633 -0.300 -0.215 CE2 MJ1 12 
MJ1 CZ   CZ  C 0 1 Y N N N N N 48.770 4.543  68.206 -4.444 1.062  -0.433 CZ  MJ1 13 
MJ1 OH   OH  O 0 1 N N N N N N 49.057 4.736  69.417 -5.495 1.838  -0.803 OH  MJ1 14 
MJ1 CA1  CA1 C 0 1 N N R Y N N 49.981 0.382  61.712 2.589  1.606  -0.374 CA1 MJ1 15 
MJ1 CA2  CA2 C 0 1 N N N Y N N 47.982 3.066  63.138 0.128  -0.901 0.540  CA2 MJ1 16 
MJ1 CA3  CA3 C 0 1 N N N Y N N 48.308 2.052  59.669 3.804  -1.071 0.525  CA3 MJ1 17 
MJ1 F1   F1  F 0 1 N N N N N N 47.720 6.686  67.998 -5.859 -0.845 -0.371 F1  MJ1 18 
MJ1 F2   F2  F 0 1 N N N N N N 46.958 6.247  65.490 -3.750 -2.415 0.373  F2  MJ1 19 
MJ1 N1   N1  N 0 1 N N N Y Y N 51.191 0.929  61.138 1.861  2.302  -1.443 N1  MJ1 20 
MJ1 N2   N2  N 0 1 N N N Y N N 48.868 2.013  63.262 0.512  0.337  0.104  N2  MJ1 21 
MJ1 N3   N3  N 0 1 N N N Y N N 48.323 2.216  61.114 2.369  -0.787 0.455  N3  MJ1 22 
MJ1 O2   O2  O 0 1 N N N Y N N 46.870 3.991  61.152 1.489  -2.796 1.160  O2  MJ1 23 
MJ1 O3   O3  O 0 1 N N N Y N Y 46.829 1.326  57.993 3.486  -1.773 -1.701 O3  MJ1 24 
MJ1 H11  H2  H 0 1 N N N N N N 49.253 -0.962 63.215 3.388  2.064  1.574  H2  MJ1 25 
MJ1 H3   H3  H 0 1 N N N N N N 46.725 4.609  63.787 -1.332 -2.330 1.157  H3  MJ1 26 
MJ1 H4   H4  H 0 1 N N N N N N 51.309 -2.272 63.547 3.588  4.507  1.197  H4  MJ1 27 
MJ1 H5   H5  H 0 1 N N N N N N 50.753 -2.286 61.839 4.432  3.593  -0.076 H5  MJ1 28 
MJ1 H6   H6  H 0 1 N N N N N N 52.143 -1.257 62.322 2.841  4.320  -0.408 H6  MJ1 29 
MJ1 H7   H7  H 0 1 N N N N N N 50.853 -0.367 64.793 1.534  3.462  2.135  H7  MJ1 30 
MJ1 H9   H9  H 0 1 N N N N N N 48.997 2.193  65.725 -1.137 1.293  0.212  H9  MJ1 31 
MJ1 H10  H10 H 0 1 N N N N N N 49.580 2.506  68.064 -3.044 2.685  -0.456 H10 MJ1 32 
MJ1 HA1  H11 H 0 1 N N N Y N N 49.476 -0.229 60.949 3.566  1.294  -0.743 H11 MJ1 33 
MJ1 HA31 H12 H 0 1 N N N Y N N 49.265 1.602  59.366 3.992  -1.800 1.314  H12 MJ1 34 
MJ1 HA32 H13 H 0 1 N N N Y N N 48.211 3.048  59.213 4.346  -0.151 0.744  H13 MJ1 35 
MJ1 H    H14 H 0 1 N N N Y Y N 51.814 0.184  60.899 0.952  2.602  -1.125 H14 MJ1 36 
MJ1 H2   H15 H 0 1 N Y N Y Y N 50.964 1.450  60.315 2.396  3.082  -1.796 H15 MJ1 37 
MJ1 OXT  O1  O 0 1 N Y N Y N Y 46.702 0.229  60.017 5.560  -1.964 -0.963 O1  MJ1 38 
MJ1 H1   H1  H 0 1 N N N N N N 49.559 3.999  69.745 -5.622 1.899  -1.759 H1  MJ1 39 
MJ1 HXT  H8  H 0 1 N Y N Y N Y 46.042 -0.275 59.555 5.813  -2.317 -1.827 H8  MJ1 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MJ1 O3  C3   DOUB N N 1  
MJ1 C3  CA3  SING N N 2  
MJ1 CA3 N3   SING N N 3  
MJ1 N3  C2   SING N N 4  
MJ1 N3  C1   SING N N 5  
MJ1 N1  CA1  SING N N 6  
MJ1 O2  C2   DOUB N N 7  
MJ1 CA1 C1   SING N N 8  
MJ1 CA1 CB1  SING N N 9  
MJ1 C2  CA2  SING N N 10 
MJ1 C1  N2   DOUB N N 11 
MJ1 CG1 CB1  SING N N 12 
MJ1 CB1 OG1  SING N N 13 
MJ1 CA2 N2   SING N N 14 
MJ1 CA2 CB2  DOUB N Z 15 
MJ1 CB2 CG2  SING N N 16 
MJ1 CG2 CD2  SING Y N 17 
MJ1 CG2 CD1  DOUB Y N 18 
MJ1 F2  CD2  SING N N 19 
MJ1 CD2 CE2  DOUB Y N 20 
MJ1 CD1 CE1  SING Y N 21 
MJ1 CE2 F1   SING N N 22 
MJ1 CE2 CZ   SING Y N 23 
MJ1 CE1 CZ   DOUB Y N 24 
MJ1 CZ  OH   SING N N 25 
MJ1 CB1 H11  SING N N 26 
MJ1 CB2 H3   SING N N 27 
MJ1 CG1 H4   SING N N 28 
MJ1 CG1 H5   SING N N 29 
MJ1 CG1 H6   SING N N 30 
MJ1 OG1 H7   SING N N 31 
MJ1 CD1 H9   SING N N 32 
MJ1 CE1 H10  SING N N 33 
MJ1 CA1 HA1  SING N N 34 
MJ1 CA3 HA31 SING N N 35 
MJ1 CA3 HA32 SING N N 36 
MJ1 N1  H    SING N N 37 
MJ1 N1  H2   SING N N 38 
MJ1 C3  OXT  SING N N 39 
MJ1 OH  H1   SING N N 40 
MJ1 OXT HXT  SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MJ1 SMILES           ACDLabs              12.01 "C1(=NC(C(N1CC(O)=O)=O)=[C@H]c2c(c(F)c(cc2)O)F)C(C(O)C)N"                                                                                                 
MJ1 InChI            InChI                1.03  "InChI=1S/C15H15F2N3O5/c1-6(21)13(18)14-19-8(15(25)20(14)5-10(23)24)4-7-2-3-9(22)12(17)11(7)16/h2-4,6,13,21-22H,5,18H2,1H3,(H,23,24)/b8-4-/t6-,13+/m1/s1" 
MJ1 InChIKey         InChI                1.03  LFWWOBUEEPZQHA-IVTRNPMTSA-N                                                                                                                               
MJ1 SMILES_CANONICAL CACTVS               3.385 "C[C@@H](O)[C@H](N)C1=NC(=C\c2ccc(O)c(F)c2F)/C(=O)N1CC(O)=O"                                                                                              
MJ1 SMILES           CACTVS               3.385 "C[CH](O)[CH](N)C1=NC(=Cc2ccc(O)c(F)c2F)C(=O)N1CC(O)=O"                                                                                                   
MJ1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C1=N/C(=C\c2ccc(c(c2F)F)O)/C(=O)N1CC(=O)O)N)O"                                                                                             
MJ1 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(C1=NC(=Cc2ccc(c(c2F)F)O)C(=O)N1CC(=O)O)N)O"                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MJ1 "SYSTEMATIC NAME" ACDLabs              12.01 "{(4Z)-2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-[(2,3-difluoro-4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid"                    
MJ1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(4~{Z})-2-[(1~{R},2~{R})-1-azanyl-2-oxidanyl-propyl]-4-[[2,3-bis(fluoranyl)-4-oxidanyl-phenyl]methylidene]-5-oxidanylidene-imidazol-1-yl]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MJ1 "Create component" 2019-04-02 RCSB 
MJ1 "Initial release"  2020-04-08 RCSB 
MJ1 "Modify backbone"  2023-11-03 PDBE 
MJ1 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            MJ1 
_pdbx_chem_comp_pcm.modified_residue_id                "THR, TYR, GLY" 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Chromophore/chromophore-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
