data_LN1
# 
_chem_comp.id                                    LN1 
_chem_comp.name                                  "(3R)-4-{[(3,4-dihydroxyphenyl)acetyl]oxy}-N-(2-formylindolizin-3-yl)-3-sulfino-D-valine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H22 N2 O9 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-05-15 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        490.483 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LN1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3D4F 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LN1 O8   O8   O 0 1 N N N N N N 34.424 59.926 3.891  -7.095 2.199  -0.083 O8   LN1 1  
LN1 C7   C7   C 0 1 N N N N N N 34.188 60.908 4.601  -5.929 1.915  -0.265 C7   LN1 2  
LN1 C6   C6   C 0 1 Y N N N N N 34.424 62.376 4.247  -5.471 0.601  -0.003 C6   LN1 3  
LN1 C9   C9   C 0 1 Y N N N N N 34.004 63.377 5.024  -6.252 -0.486 0.472  C9   LN1 4  
LN1 CG   CG   C 0 1 Y N N N N N 34.173 64.529 4.375  -5.421 -1.564 0.584  CG   LN1 5  
LN1 CD1  CD1  C 0 1 Y N N N N N 33.908 65.850 4.730  -5.656 -2.896 1.005  CD1  LN1 6  
LN1 CE1  CE1  C 0 1 Y N N N N N 34.182 66.867 3.816  -4.628 -3.780 1.019  CE1  LN1 7  
LN1 CZ   CZ   C 0 1 Y N N N N N 34.706 66.549 2.566  -3.340 -3.367 0.616  CZ   LN1 8  
LN1 CE2  CE2  C 0 1 Y N N N N N 34.971 65.231 2.204  -3.119 -2.103 0.217  CE2  LN1 9  
LN1 ND2  ND2  N 0 1 Y N N N N N 34.712 64.204 3.124  -4.146 -1.183 0.193  ND2  LN1 10 
LN1 C5   C5   C 0 1 Y N N N N N 34.908 62.822 3.018  -4.169 0.126  -0.169 C5   LN1 11 
LN1 N4   N4   N 0 1 N N N N N N 35.309 61.967 2.075  -3.090 0.862  -0.621 N4   LN1 12 
LN1 C3   C3   C 0 1 N N S N N N 36.656 62.102 1.505  -1.839 0.104  -0.478 C3   LN1 13 
LN1 C3A  C3A  C 0 1 N N N N N N 37.718 61.814 2.569  -1.667 -0.810 -1.664 C3A  LN1 14 
LN1 O3A  O3A  O 0 1 N N N N N N 37.507 60.879 3.366  -0.588 -1.604 -1.748 O3A  LN1 15 
LN1 O3B  O3B  O 0 1 N N N N N N 38.743 62.529 2.551  -2.500 -0.828 -2.539 O3B  LN1 16 
LN1 C2   C2   C 0 1 N N R N N N 36.801 61.175 0.295  -0.660 1.076  -0.407 C2   LN1 17 
LN1 S1   S1   S 0 1 N N S N N N 35.366 61.426 -0.812 -0.790 2.076  1.100  S1   LN1 18 
LN1 O12  O12  O 0 1 N N N N N N 35.636 60.811 -2.080 -0.756 1.033  2.208  O12  LN1 19 
LN1 O13  O13  O 0 1 N N N N N N 35.304 62.914 -0.998 -2.103 2.609  1.203  O13  LN1 20 
LN1 CG2  CG2  C 0 1 N N N N N N 36.841 59.700 0.708  -0.680 1.993  -1.632 CG2  LN1 21 
LN1 CG1  CG1  C 0 1 N N N N N N 38.067 61.561 -0.452 0.651  0.286  -0.383 CG1  LN1 22 
LN1 OAV  OAV  O 0 1 N N N N N N 39.197 61.351 0.406  1.770  1.208  -0.316 OAV  LN1 23 
LN1 CAX  CAX  C 0 1 N N N N N N 40.332 61.536 -0.315 3.000  0.672  -0.287 CAX  LN1 24 
LN1 OAD  OAD  O 0 1 N N N N N N 40.507 62.582 -0.939 3.137  -0.528 -0.318 OAD  LN1 25 
LN1 CAS  CAS  C 0 1 N N N N N N 41.386 60.428 -0.317 4.211  1.567  -0.218 CAS  LN1 26 
LN1 CAY  CAY  C 0 1 Y N N N N N 42.652 60.991 -0.958 5.459  0.722  -0.198 CAY  LN1 27 
LN1 CAQ  CAQ  C 0 1 Y N N N N N 42.696 61.185 -2.333 5.984  0.296  1.008  CAQ  LN1 28 
LN1 CAM  CAM  C 0 1 Y N N N N N 43.732 61.356 -0.163 6.074  0.371  -1.385 CAM  LN1 29 
LN1 CAN  CAN  C 0 1 Y N N N N N 44.861 61.920 -0.746 7.218  -0.404 -1.372 CAN  LN1 30 
LN1 CAZ  CAZ  C 0 1 Y N N N N N 44.909 62.117 -2.122 7.753  -0.829 -0.167 CAZ  LN1 31 
LN1 OAH  OAH  O 0 1 N N N N N N 46.046 62.620 -2.675 8.880  -1.591 -0.152 OAH  LN1 32 
LN1 CBA  CBA  C 0 1 Y N N N N N 43.825 61.749 -2.916 7.132  -0.480 1.028  CBA  LN1 33 
LN1 OAI  OAI  O 0 1 N N N N N N 43.850 61.909 -4.267 7.650  -0.900 2.214  OAI  LN1 34 
LN1 H7   H7   H 0 1 N N N N N N 33.770 60.708 5.577  -5.241 2.663  -0.631 H7   LN1 35 
LN1 H9   H9   H 0 1 N N N N N N 33.594 63.271 6.017  -7.306 -0.464 0.703  H9   LN1 36 
LN1 HD1  HD1  H 0 1 N N N N N N 33.496 66.083 5.701  -6.644 -3.204 1.312  HD1  LN1 37 
LN1 HE1  HE1  H 0 1 N N N N N N 33.988 67.897 4.077  -4.794 -4.798 1.338  HE1  LN1 38 
LN1 HZ   HZ   H 0 1 N N N N N N 34.911 67.342 1.862  -2.524 -4.074 0.629  HZ   LN1 39 
LN1 HE2  HE2  H 0 1 N N N N N N 35.371 65.002 1.227  -2.127 -1.805 -0.087 HE2  LN1 40 
LN1 HN4  HN4  H 0 1 N N N N N N 35.269 61.056 2.486  -3.227 1.156  -1.577 HN4  LN1 41 
LN1 H3   H3   H 0 1 N N N N N N 36.806 63.137 1.163  -1.877 -0.489 0.436  H3   LN1 42 
LN1 HO3A HO3A H 0 0 N N N N N N 38.245 60.794 3.958  -0.521 -2.172 -2.527 HO3A LN1 43 
LN1 HO12 HO12 H 0 0 N N N N N N 35.696 61.481 -2.751 -0.817 1.404  3.099  HO12 LN1 44 
LN1 HG2  HG2  H 0 1 N N N N N N 36.851 59.067 -0.192 -1.613 2.556  -1.649 HG2  LN1 45 
LN1 HG2A HG2A H 0 0 N N N N N N 37.748 59.510 1.300  0.161  2.685  -1.581 HG2A LN1 46 
LN1 HG2B HG2B H 0 0 N N N N N N 35.953 59.465 1.312  -0.602 1.392  -2.537 HG2B LN1 47 
LN1 HG1  HG1  H 0 1 N N N N N N 38.168 60.940 -1.354 0.665  -0.367 0.489  HG1  LN1 48 
LN1 HG1A HG1A H 0 0 N N N N N N 38.016 62.619 -0.747 0.729  -0.315 -1.289 HG1A LN1 49 
LN1 HAS  HAS  H 0 1 N N N N N N 41.596 60.106 0.713  4.229  2.222  -1.089 HAS  LN1 50 
LN1 HASA HASA H 0 0 N N N N N N 41.025 59.556 -0.882 4.166  2.170  0.689  HASA LN1 51 
LN1 HAQ  HAQ  H 0 1 N N N N N N 41.855 60.898 -2.947 5.500  0.569  1.934  HAQ  LN1 52 
LN1 HAM  HAM  H 0 1 N N N N N N 43.694 61.202 0.905  5.658  0.702  -2.326 HAM  LN1 53 
LN1 HAN  HAN  H 0 1 N N N N N N 45.701 62.205 -0.130 7.696  -0.677 -2.302 HAN  LN1 54 
LN1 HOAH HOAH H 0 0 N N N N N N 45.919 62.737 -3.609 9.699  -1.080 -0.109 HOAH LN1 55 
LN1 HOAI HOAI H 0 0 N N N N N N 43.856 62.836 -4.477 7.306  -1.752 2.513  HOAI LN1 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LN1 O8  C7   DOUB N N 1  
LN1 C7  H7   SING N N 2  
LN1 C6  C7   SING N N 3  
LN1 C6  C9   SING Y N 4  
LN1 C9  H9   SING N N 5  
LN1 CG  C9   DOUB Y N 6  
LN1 CG  CD1  SING Y N 7  
LN1 CD1 HD1  SING N N 8  
LN1 CE1 CD1  DOUB Y N 9  
LN1 CE1 HE1  SING N N 10 
LN1 CZ  CE1  SING Y N 11 
LN1 CZ  HZ   SING N N 12 
LN1 CE2 CZ   DOUB Y N 13 
LN1 CE2 ND2  SING Y N 14 
LN1 CE2 HE2  SING N N 15 
LN1 ND2 CG   SING Y N 16 
LN1 C5  C6   DOUB Y N 17 
LN1 C5  ND2  SING Y N 18 
LN1 N4  C5   SING N N 19 
LN1 N4  HN4  SING N N 20 
LN1 C3  N4   SING N N 21 
LN1 C3  C3A  SING N N 22 
LN1 C3  H3   SING N N 23 
LN1 C3A O3A  SING N N 24 
LN1 O3A HO3A SING N N 25 
LN1 O3B C3A  DOUB N N 26 
LN1 C2  C3   SING N N 27 
LN1 C2  CG2  SING N N 28 
LN1 S1  C2   SING N N 29 
LN1 O12 S1   SING N N 30 
LN1 O12 HO12 SING N N 31 
LN1 O13 S1   DOUB N N 32 
LN1 CG2 HG2  SING N N 33 
LN1 CG2 HG2A SING N N 34 
LN1 CG2 HG2B SING N N 35 
LN1 CG1 C2   SING N N 36 
LN1 CG1 OAV  SING N N 37 
LN1 CG1 HG1  SING N N 38 
LN1 CG1 HG1A SING N N 39 
LN1 CAX OAV  SING N N 40 
LN1 OAD CAX  DOUB N N 41 
LN1 CAS CAX  SING N N 42 
LN1 CAS HAS  SING N N 43 
LN1 CAS HASA SING N N 44 
LN1 CAY CAS  SING N N 45 
LN1 CAY CAM  SING Y N 46 
LN1 CAQ CAY  DOUB Y N 47 
LN1 CAQ HAQ  SING N N 48 
LN1 CAM HAM  SING N N 49 
LN1 CAN CAM  DOUB Y N 50 
LN1 CAN HAN  SING N N 51 
LN1 CAZ CAN  SING Y N 52 
LN1 OAH CAZ  SING N N 53 
LN1 OAH HOAH SING N N 54 
LN1 CBA CAQ  SING Y N 55 
LN1 CBA CAZ  DOUB Y N 56 
LN1 OAI CBA  SING N N 57 
LN1 OAI HOAI SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LN1 SMILES           ACDLabs              10.04 "O=C(OCC(S(=O)O)(C)C(C(=O)O)Nc2c(cc1ccccn12)C=O)Cc3ccc(O)c(O)c3"                                                                                                                                   
LN1 SMILES_CANONICAL CACTVS               3.341 "C[C@](COC(=O)Cc1ccc(O)c(O)c1)([C@@H](Nc2n3ccccc3cc2C=O)C(O)=O)[S@](O)=O"                                                                                                                          
LN1 SMILES           CACTVS               3.341 "C[C](COC(=O)Cc1ccc(O)c(O)c1)([CH](Nc2n3ccccc3cc2C=O)C(O)=O)[S](O)=O"                                                                                                                              
LN1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@](COC(=O)Cc1ccc(c(c1)O)O)([C@H](C(=O)O)Nc2c(cc3n2cccc3)C=O)[S@@](=O)O"                                                                                                                        
LN1 SMILES           "OpenEye OEToolkits" 1.5.0 "CC(COC(=O)Cc1ccc(c(c1)O)O)(C(C(=O)O)Nc2c(cc3n2cccc3)C=O)S(=O)O"                                                                                                                                   
LN1 InChI            InChI                1.03  "InChI=1S/C22H22N2O9S/c1-22(34(31)32,12-33-18(28)9-13-5-6-16(26)17(27)8-13)19(21(29)30)23-20-14(11-25)10-15-4-2-3-7-24(15)20/h2-8,10-11,19,23,26-27H,9,12H2,1H3,(H,29,30)(H,31,32)/t19-,22-/m0/s1" 
LN1 InChIKey         InChI                1.03  DEOZLEGRVHDNKC-UGKGYDQZSA-N                                                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LN1 "SYSTEMATIC NAME" ACDLabs              10.04 "(3R)-4-{[(3,4-dihydroxyphenyl)acetyl]oxy}-N-(2-formylindolizin-3-yl)-3-sulfino-D-valine"                              
LN1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R)-4-[2-(3,4-dihydroxyphenyl)ethanoyloxy]-2-[(2-methanoylindolizin-3-yl)amino]-3-methyl-3-sulfino-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LN1 "Create component"  2008-05-15 RCSB 
LN1 "Modify descriptor" 2011-06-04 RCSB 
LN1 "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            LN1 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C7 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
