data_KG1
# 
_chem_comp.id                                    KG1 
_chem_comp.name                                  "propadienyl 6-deoxy-alpha-L-galactopyranoside" 
_chem_comp.type                                  L-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C9 H14 O5" 
_chem_comp.mon_nstd_parent_comp_id               FUC 
_chem_comp.pdbx_synonyms                         "propargyl-fucoside; propadienyl 6-deoxy-alpha-L-galactoside; propadienyl 6-deoxy-L-galactoside; propadienyl 6-deoxy-galactoside" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-12-04 
_chem_comp.pdbx_modified_date                    2025-12-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        202.204 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KG1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6F5W 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KG1 O4  O4  O 0 1 N N N N N N 25.325 -38.009 48.868 -2.836 -0.764 0.159  O4  KG1 1  
KG1 C4  C4  C 0 1 N N S N N N 25.043 -39.327 48.384 -1.723 -0.628 -0.726 C4  KG1 2  
KG1 C5  C5  C 0 1 N N S N N N 23.688 -39.409 47.650 -0.567 -1.503 -0.233 C5  KG1 3  
KG1 C6  C6  C 0 1 N N N N N N 23.587 -38.451 46.481 -1.032 -2.958 -0.145 C6  KG1 4  
KG1 O5  O5  O 0 1 N N N N N N 22.630 -39.110 48.562 -0.150 -1.056 1.058  O5  KG1 5  
KG1 C3  C3  C 0 1 N N R N N N 25.035 -40.268 49.581 -1.269 0.835  -0.755 C3  KG1 6  
KG1 O3  O3  O 0 1 N N N N N N 26.188 -40.006 50.363 -2.363 1.668  -1.143 O3  KG1 7  
KG1 C2  C2  C 0 1 N N S N N N 23.827 -39.965 50.455 -0.790 1.237  0.644  C2  KG1 8  
KG1 O2  O2  O 0 1 N N N N N N 23.795 -40.913 51.497 -0.296 2.578  0.612  O2  KG1 9  
KG1 C1  C1  C 0 1 N N R N N N 22.537 -40.020 49.653 0.330  0.290  1.083  C1  KG1 10 
KG1 O1  O1  O 0 1 N N N N N N 22.345 -41.354 49.200 1.439  0.417  0.192  O1  KG1 11 
KG1 CM  CM  C 0 1 N N N N N N 21.114 -41.704 48.528 2.585  -0.345 0.577  CM  KG1 12 
KG1 C7  C7  C 0 1 N N N N N N 20.891 -42.924 48.313 3.662  -0.142 -0.405 C7  KG1 13 
KG1 C8  C8  C 0 1 N N N N N N 20.713 -44.151 48.056 4.522  0.019  -1.188 C8  KG1 14 
KG1 HO4 H1  H 0 1 N Y N N N N 26.165 -38.007 49.311 -3.177 -1.667 0.226  HO4 KG1 15 
KG1 H4  H2  H 0 1 N N N N N N 25.834 -39.648 47.690 -2.014 -0.938 -1.729 H4  KG1 16 
KG1 H5  H3  H 0 1 N N N N N N 23.568 -40.434 47.270 0.267  -1.430 -0.931 H5  KG1 17 
KG1 H61 H4  H 0 1 N N N N N N 22.602 -38.558 46.003 -1.351 -3.298 -1.130 H61 KG1 18 
KG1 H62 H5  H 0 1 N N N N N N 23.709 -37.419 46.841 -0.209 -3.581 0.206  H62 KG1 19 
KG1 H63 H6  H 0 1 N N N N N N 24.377 -38.680 45.750 -1.866 -3.031 0.553  H63 KG1 20 
KG1 H3  H7  H 0 1 N N N N N N 25.004 -41.313 49.240 -0.452 0.949  -1.468 H3  KG1 21 
KG1 HO3 H8  H 0 1 N Y N N N N 26.199 -40.586 51.116 -2.146 2.609  -1.182 HO3 KG1 22 
KG1 H2  H9  H 0 1 N N N N N N 23.939 -38.952 50.869 -1.620 1.171  1.346  H2  KG1 23 
KG1 HO2 H10 H 0 1 N Y N N N N 23.047 -40.743 52.057 0.025  2.899  1.466  HO2 KG1 24 
KG1 H1  H11 H 0 1 N N N N N N 21.705 -39.727 50.311 0.645  0.544  2.095  H1  KG1 25 
KG1 H12 H12 H 0 1 N N N N N N 21.115 -41.194 47.554 2.924  -0.020 1.561  H12 KG1 26 
KG1 H14 H14 H 0 1 N N N N N N 20.564 -45.178 47.841 5.290  0.164  -1.889 H14 KG1 27 
KG1 H6  H6  H 0 1 N N N N N N 20.285 -41.322 49.141 2.322  -1.403 0.615  H6  KG1 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KG1 C6 C5  SING N N 1  
KG1 C5 C4  SING N N 2  
KG1 C5 O5  SING N N 3  
KG1 C8 C7  TRIP N N 4  
KG1 C7 CM  SING N N 5  
KG1 C4 O4  SING N N 6  
KG1 C4 C3  SING N N 7  
KG1 CM O1  SING N N 8  
KG1 O5 C1  SING N N 9  
KG1 O1 C1  SING N N 10 
KG1 C3 O3  SING N N 11 
KG1 C3 C2  SING N N 12 
KG1 C1 C2  SING N N 13 
KG1 C2 O2  SING N N 14 
KG1 O4 HO4 SING N N 15 
KG1 C4 H4  SING N N 16 
KG1 C5 H5  SING N N 17 
KG1 C6 H61 SING N N 18 
KG1 C6 H62 SING N N 19 
KG1 C6 H63 SING N N 20 
KG1 C3 H3  SING N N 21 
KG1 O3 HO3 SING N N 22 
KG1 C2 H2  SING N N 23 
KG1 O2 HO2 SING N N 24 
KG1 C1 H1  SING N N 25 
KG1 CM H12 SING N N 26 
KG1 C8 H14 SING N N 27 
KG1 CM H6  SING N N 28 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KG1 InChI            InChI                1.06  "InChI=1S/C9H14O5/c1-3-4-13-9-8(12)7(11)6(10)5(2)14-9/h1,5-12H,4H2,2H3/t5-,6+,7+,8-,9+/m0/s1" 
KG1 InChIKey         InChI                1.06  BVZDJWONINIPAQ-JTPBWFLFSA-N                                                                   
KG1 SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1O[C@@H](OCC#C)[C@@H](O)[C@H](O)[C@@H]1O"                                             
KG1 SMILES           CACTVS               3.385 "C[CH]1O[CH](OCC#C)[CH](O)[CH](O)[CH]1O"                                                      
KG1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OCC#C)O)O)O"                                             
KG1 SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)OCC#C)O)O)O"                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           KG1 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},3~{S},4~{R},5~{S},6~{R})-2-methyl-6-prop-2-ynoxy-oxane-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
KG1 "CARBOHYDRATE ISOMER"                 L        PDB ? 
KG1 "CARBOHYDRATE RING"                   pyranose PDB ? 
KG1 "CARBOHYDRATE ANOMER"                 alpha    PDB ? 
KG1 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 KG1 propargyl-fucoside                        PDB ? 
2 KG1 "propadienyl 6-deoxy-alpha-L-galactoside" PDB ? 
3 KG1 "propadienyl 6-deoxy-L-galactoside"       PDB ? 
4 KG1 "propadienyl 6-deoxy-galactoside"         PDB ? 
# 
_pdbx_chem_comp_related.comp_id             KG1 
_pdbx_chem_comp_related.related_comp_id     FUC 
_pdbx_chem_comp_related.relationship_type   "Carbohydrate core" 
_pdbx_chem_comp_related.details             ? 
# 
loop_
_pdbx_chem_comp_atom_related.ordinal 
_pdbx_chem_comp_atom_related.comp_id 
_pdbx_chem_comp_atom_related.atom_id 
_pdbx_chem_comp_atom_related.related_comp_id 
_pdbx_chem_comp_atom_related.related_atom_id 
_pdbx_chem_comp_atom_related.related_type 
1  KG1 C1  FUC C1  "Carbohydrate core" 
2  KG1 C2  FUC C2  "Carbohydrate core" 
3  KG1 C3  FUC C3  "Carbohydrate core" 
4  KG1 C4  FUC C4  "Carbohydrate core" 
5  KG1 C5  FUC C5  "Carbohydrate core" 
6  KG1 C6  FUC C6  "Carbohydrate core" 
7  KG1 O1  FUC O1  "Carbohydrate core" 
8  KG1 O2  FUC O2  "Carbohydrate core" 
9  KG1 O3  FUC O3  "Carbohydrate core" 
10 KG1 O4  FUC O4  "Carbohydrate core" 
11 KG1 O5  FUC O5  "Carbohydrate core" 
12 KG1 HO4 FUC HO4 "Carbohydrate core" 
13 KG1 HO2 FUC HO2 "Carbohydrate core" 
14 KG1 H1  FUC H1  "Carbohydrate core" 
15 KG1 H4  FUC H4  "Carbohydrate core" 
16 KG1 H5  FUC H5  "Carbohydrate core" 
17 KG1 H61 FUC H61 "Carbohydrate core" 
18 KG1 H62 FUC H62 "Carbohydrate core" 
19 KG1 H63 FUC H63 "Carbohydrate core" 
20 KG1 H3  FUC H3  "Carbohydrate core" 
21 KG1 HO3 FUC HO3 "Carbohydrate core" 
22 KG1 H2  FUC H2  "Carbohydrate core" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KG1 "Create component"         2017-12-04 EBI  
KG1 "Initial release"          2018-01-31 RCSB 
KG1 "Other modification"       2020-07-03 RCSB 
KG1 "Modify parent residue"    2020-07-17 RCSB 
KG1 "Modify name"              2020-07-17 RCSB 
KG1 "Modify synonyms"          2020-07-17 RCSB 
KG1 "Modify internal type"     2020-07-17 RCSB 
KG1 "Modify linking type"      2020-07-17 RCSB 
KG1 "Modify atom id"           2020-07-17 RCSB 
KG1 "Modify component atom id" 2020-07-17 RCSB 
KG1 "Modify leaving atom flag" 2020-07-17 RCSB 
KG1 "Modify coordinates"       2025-12-03 PDBE 
# 
