data_K11
# 
_chem_comp.id                                    K11 
_chem_comp.name                                  "N-[4-({3-[2-(methylamino)pyrimidin-4-yl]pyridin-2-yl}oxy)naphthalen-1-yl]-6-(trifluoromethyl)-1H-benzimidazol-2-amine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H20 F3 N7 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-10-17 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        527.500 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     K11 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3EWH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
K11 C38  C38  C 0 1 N N N 16.816 -8.109 1.334  5.931  3.574  3.301  C38  K11 1  
K11 N37  N37  N 0 1 N N N 15.822 -8.754 2.211  5.244  2.635  2.412  N37  K11 2  
K11 C35  C35  C 0 1 Y N N 15.862 -8.601 3.541  5.821  2.274  1.207  C35  K11 3  
K11 N30  N30  N 0 1 Y N N 16.733 -7.729 4.090  5.186  1.423  0.416  N30  K11 4  
K11 N34  N34  N 0 1 Y N N 15.037 -9.328 4.325  6.994  2.793  0.872  N34  K11 5  
K11 C33  C33  C 0 1 Y N N 15.069 -9.188 5.648  7.579  2.473  -0.272 C33  K11 6  
K11 C32  C32  C 0 1 Y N N 15.961 -8.285 6.232  6.954  1.583  -1.127 C32  K11 7  
K11 C31  C31  C 0 1 Y N N 16.812 -7.525 5.423  5.715  1.056  -0.749 C31  K11 8  
K11 C24  C24  C 0 1 Y N N 17.760 -6.609 5.936  5.002  0.105  -1.633 C24  K11 9  
K11 C25  C25  C 0 1 Y N N 18.823 -6.230 5.106  5.556  -0.281 -2.855 C25  K11 10 
K11 C26  C26  C 0 1 Y N N 19.782 -5.339 5.583  4.850  -1.174 -3.645 C26  K11 11 
K11 C27  C27  C 0 1 Y N N 19.683 -4.844 6.879  3.630  -1.653 -3.205 C27  K11 12 
K11 N28  N28  N 0 1 Y N N 18.679 -5.210 7.671  3.127  -1.274 -2.046 N28  K11 13 
K11 C29  C29  C 0 1 Y N N 17.722 -6.071 7.243  3.763  -0.429 -1.253 C29  K11 14 
K11 O36  O36  O 0 1 N N N 16.697 -6.426 8.076  3.211  -0.071 -0.068 O36  K11 15 
K11 C20  C20  C 0 1 Y N N 16.489 -5.827 9.291  1.963  -0.527 0.217  C20  K11 16 
K11 C21  C21  C 0 1 Y N N 15.787 -4.619 9.357  0.877  0.277  0.015  C21  K11 17 
K11 C22  C22  C 0 1 Y N N 15.542 -4.015 10.594 -0.410 -0.171 0.300  C22  K11 18 
K11 C13  C13  C 0 1 Y N N 16.912 -6.452 10.471 1.785  -1.833 0.718  C13  K11 19 
K11 C18  C18  C 0 1 Y N N 17.604 -7.672 10.421 2.881  -2.685 0.932  C18  K11 20 
K11 C17  C17  C 0 1 Y N N 18.036 -8.290 11.593 2.673  -3.941 1.417  C17  K11 21 
K11 C16  C16  C 0 1 Y N N 17.778 -7.689 12.827 1.388  -4.394 1.705  C16  K11 22 
K11 C15  C15  C 0 1 Y N N 17.098 -6.471 12.888 0.303  -3.595 1.509  C15  K11 23 
K11 C14  C14  C 0 1 Y N N 16.660 -5.848 11.713 0.478  -2.295 1.011  C14  K11 24 
K11 C23  C23  C 0 1 Y N N 15.960 -4.632 11.777 -0.623 -1.439 0.796  C23  K11 25 
K11 N19  N19  N 0 1 N N N 15.748 -4.055 12.976 -1.920 -1.875 1.078  N19  K11 26 
K11 C12  C12  C 0 1 Y N N 14.595 -3.564 13.457 -3.004 -1.121 0.679  C12  K11 27 
K11 N5   N5   N 0 1 Y N N 13.423 -3.425 12.823 -4.305 -1.383 1.003  N5   K11 28 
K11 C7   C7   C 0 1 Y N N 12.567 -2.895 13.707 -5.081 -0.400 0.413  C7   K11 29 
K11 C8   C8   C 0 1 Y N N 11.221 -2.528 13.632 -6.442 -0.138 0.384  C8   K11 30 
K11 C9   C9   C 0 1 Y N N 10.585 -1.986 14.757 -6.917 0.954  -0.313 C9   K11 31 
K11 C39  C39  C 0 1 N N N 9.115  -1.577 14.674 -8.397 1.237  -0.343 C39  K11 32 
K11 F2   F2   F 0 1 N N N 8.935  -0.855 13.573 -8.735 2.068  0.730  F2   K11 33 
K11 F3   F3   F 0 1 N N N 8.754  -0.869 15.753 -8.725 1.872  -1.546 F3   K11 34 
K11 F1   F1   F 0 1 N N N 8.373  -2.664 14.604 -9.104 0.034  -0.243 F1   K11 35 
K11 C10  C10  C 0 1 Y N N 11.286 -1.816 15.953 -6.041 1.794  -0.985 C10  K11 36 
K11 C11  C11  C 0 1 Y N N 12.627 -2.186 16.030 -4.686 1.548  -0.968 C11  K11 37 
K11 C6   C6   C 0 1 Y N N 13.259 -2.721 14.908 -4.189 0.447  -0.267 C6   K11 38 
K11 N4   N4   N 0 1 Y N N 14.504 -3.140 14.716 -2.938 -0.043 -0.062 N4   K11 39 
K11 H38  H38  H 0 1 N N N 16.378 -7.948 0.338  6.077  4.523  2.784  H38  K11 40 
K11 H38A H38A H 0 0 N N N 17.112 -7.141 1.765  5.328  3.736  4.194  H38A K11 41 
K11 H38B H38B H 0 0 N N N 17.701 -8.756 1.245  6.899  3.163  3.586  H38B K11 42 
K11 HN37 HN37 H 0 0 N N N 14.934 -8.394 1.924  4.384  2.266  2.667  HN37 K11 43 
K11 H33  H33  H 0 1 N N N 14.406 -9.772 6.270  8.535  2.902  -0.535 H33  K11 44 
K11 H32  H32  H 0 1 N N N 15.993 -8.174 7.306  7.410  1.306  -2.066 H32  K11 45 
K11 H25  H25  H 0 1 N N N 18.899 -6.626 4.104  6.510  0.107  -3.177 H25  K11 46 
K11 H26  H26  H 0 1 N N N 20.600 -5.033 4.948  5.249  -1.493 -4.596 H26  K11 47 
K11 H27  H27  H 0 1 N N N 20.429 -4.155 7.246  3.080  -2.349 -3.821 H27  K11 48 
K11 H21  H21  H 0 1 N N N 15.433 -4.152 8.450  1.019  1.275  -0.372 H21  K11 49 
K11 H22  H22  H 0 1 N N N 15.027 -3.067 10.636 -1.252 0.484  0.132  H22  K11 50 
K11 H18  H18  H 0 1 N N N 17.803 -8.136 9.466  3.882  -2.347 0.713  H18  K11 51 
K11 H17  H17  H 0 1 N N N 18.568 -9.229 11.547 3.517  -4.594 1.581  H17  K11 52 
K11 H16  H16  H 0 1 N N N 18.106 -8.168 13.738 1.250  -5.395 2.088  H16  K11 53 
K11 H15  H15  H 0 1 N N N 16.909 -6.008 13.845 -0.688 -3.960 1.736  H15  K11 54 
K11 HN19 HN19 H 0 0 N N N 16.543 -3.984 13.578 -2.058 -2.709 1.555  HN19 K11 55 
K11 HN5  HN5  H 0 1 N N N 13.225 -3.670 11.874 -4.625 -2.122 1.544  HN5  K11 56 
K11 H8   H8   H 0 1 N N N 10.673 -2.661 12.711 -7.129 -0.788 0.905  H8   K11 57 
K11 H10  H10  H 0 1 N N N 10.789 -1.399 16.816 -6.425 2.645  -1.527 H10  K11 58 
K11 H11  H11  H 0 1 N N N 13.174 -2.059 16.953 -4.010 2.206  -1.494 H11  K11 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
K11 C38 N37  SING N N 1  
K11 N37 C35  SING N N 2  
K11 C35 N30  DOUB Y N 3  
K11 C35 N34  SING Y N 4  
K11 N30 C31  SING Y N 5  
K11 N34 C33  DOUB Y N 6  
K11 C33 C32  SING Y N 7  
K11 C32 C31  DOUB Y N 8  
K11 C31 C24  SING Y N 9  
K11 C24 C25  DOUB Y N 10 
K11 C24 C29  SING Y N 11 
K11 C25 C26  SING Y N 12 
K11 C26 C27  DOUB Y N 13 
K11 C27 N28  SING Y N 14 
K11 N28 C29  DOUB Y N 15 
K11 C29 O36  SING N N 16 
K11 O36 C20  SING N N 17 
K11 C20 C21  DOUB Y N 18 
K11 C20 C13  SING Y N 19 
K11 C21 C22  SING Y N 20 
K11 C22 C23  DOUB Y N 21 
K11 C13 C18  DOUB Y N 22 
K11 C13 C14  SING Y N 23 
K11 C18 C17  SING Y N 24 
K11 C17 C16  DOUB Y N 25 
K11 C16 C15  SING Y N 26 
K11 C15 C14  DOUB Y N 27 
K11 C14 C23  SING Y N 28 
K11 C23 N19  SING N N 29 
K11 N19 C12  SING N N 30 
K11 C12 N5   SING Y N 31 
K11 C12 N4   DOUB Y N 32 
K11 N5  C7   SING Y N 33 
K11 C7  C8   DOUB Y N 34 
K11 C7  C6   SING Y N 35 
K11 C8  C9   SING Y N 36 
K11 C9  C39  SING N N 37 
K11 C9  C10  DOUB Y N 38 
K11 C39 F2   SING N N 39 
K11 C39 F3   SING N N 40 
K11 C39 F1   SING N N 41 
K11 C10 C11  SING Y N 42 
K11 C11 C6   DOUB Y N 43 
K11 C6  N4   SING Y N 44 
K11 C38 H38  SING N N 45 
K11 C38 H38A SING N N 46 
K11 C38 H38B SING N N 47 
K11 N37 HN37 SING N N 48 
K11 C33 H33  SING N N 49 
K11 C32 H32  SING N N 50 
K11 C25 H25  SING N N 51 
K11 C26 H26  SING N N 52 
K11 C27 H27  SING N N 53 
K11 C21 H21  SING N N 54 
K11 C22 H22  SING N N 55 
K11 C18 H18  SING N N 56 
K11 C17 H17  SING N N 57 
K11 C16 H16  SING N N 58 
K11 C15 H15  SING N N 59 
K11 N19 HN19 SING N N 60 
K11 N5  HN5  SING N N 61 
K11 C8  H8   SING N N 62 
K11 C10 H10  SING N N 63 
K11 C11 H11  SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
K11 SMILES           ACDLabs              10.04 "FC(F)(F)c6cc1c(nc(n1)Nc5c2ccccc2c(Oc4ncccc4c3nc(ncc3)NC)cc5)cc6"                                                                                                                          
K11 SMILES_CANONICAL CACTVS               3.341 "CNc1nccc(n1)c2cccnc2Oc3ccc(Nc4[nH]c5cc(ccc5n4)C(F)(F)F)c6ccccc36"                                                                                                                         
K11 SMILES           CACTVS               3.341 "CNc1nccc(n1)c2cccnc2Oc3ccc(Nc4[nH]c5cc(ccc5n4)C(F)(F)F)c6ccccc36"                                                                                                                         
K11 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CNc1nccc(n1)c2cccnc2Oc3ccc(c4c3cccc4)Nc5[nH]c6cc(ccc6n5)C(F)(F)F"                                                                                                                         
K11 SMILES           "OpenEye OEToolkits" 1.5.0 "CNc1nccc(n1)c2cccnc2Oc3ccc(c4c3cccc4)Nc5[nH]c6cc(ccc6n5)C(F)(F)F"                                                                                                                         
K11 InChI            InChI                1.03  "InChI=1S/C28H20F3N7O/c1-32-26-34-14-12-21(35-26)19-7-4-13-33-25(19)39-24-11-10-20(17-5-2-3-6-18(17)24)36-27-37-22-9-8-16(28(29,30)31)15-23(22)38-27/h2-15H,1H3,(H,32,34,35)(H2,36,37,38)" 
K11 InChIKey         InChI                1.03  VIHXUAKPZPXVSW-UHFFFAOYSA-N                                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
K11 "SYSTEMATIC NAME" ACDLabs              10.04 "N-[4-({3-[2-(methylamino)pyrimidin-4-yl]pyridin-2-yl}oxy)naphthalen-1-yl]-6-(trifluoromethyl)-1H-benzimidazol-2-amine" 
K11 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[4-[3-(2-methylaminopyrimidin-4-yl)pyridin-2-yl]oxynaphthalen-1-yl]-6-(trifluoromethyl)-1H-benzimidazol-2-amine"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
K11 "Create component"     2008-10-17 RCSB 
K11 "Modify aromatic_flag" 2011-06-04 RCSB 
K11 "Modify descriptor"    2011-06-04 RCSB 
# 
