data_GT1
#

_chem_comp.id                                   GT1
_chem_comp.name                                 "[5-hydroxy-4-(methoxymethyl)-6-methylpyridin-3-yl]methyl dihydrogen phosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H14 N O6 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "ginkgotoxin, phosphorylated"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-04-13
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       263.184
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GT1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4EN4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GT1  O1   O1   O  0  1  N  N  N  13.984  29.013  30.886  -4.120  -0.258   0.351  O1   GT1   1  
GT1  C4   C4   C  0  1  Y  N  N  13.304  28.228  30.031  -2.931   0.377   0.174  C4   GT1   2  
GT1  C6   C6   C  0  1  Y  N  N  12.014  28.524  29.709  -1.734  -0.320   0.298  C6   GT1   3  
GT1  C1   C1   C  0  1  N  N  N  11.400  29.653  30.261  -1.727  -1.791   0.630  C1   GT1   4  
GT1  O3   O3   O  0  1  N  N  N  11.906  30.767  29.472  -1.761  -2.552  -0.579  O3   GT1   5  
GT1  C3   C3   C  0  1  N  N  N  11.373  32.017  29.906  -1.758  -3.966  -0.376  C3   GT1   6  
GT1  C2   C2   C  0  1  Y  N  N  11.284  27.621  28.744  -0.547   0.370   0.109  C2   GT1   7  
GT1  C5   C5   C  0  1  N  N  N   9.837  27.889  28.373   0.776  -0.341   0.233  C5   GT1   8  
GT1  O2   O2   O  0  1  N  N  N   9.286  27.018  27.380   1.838   0.586  -0.006  O2   GT1   9  
GT1  C8   C8   C  0  1  Y  N  N  11.992  26.568  28.255  -0.592   1.718  -0.194  C8   GT1  10  
GT1  N1   N1   N  0  1  Y  N  N  13.296  26.309  28.590  -1.744   2.349  -0.304  N1   GT1  11  
GT1  C7   C7   C  0  1  Y  N  N  13.900  27.149  29.480  -2.895   1.728  -0.138  C7   GT1  12  
GT1  C9   C9   C  0  1  N  N  N  15.313  26.839  29.832  -4.184   2.496  -0.275  C9   GT1  13  
GT1  P1   P1   P  0  1  N  N  N   7.741  27.152  27.042   3.392   0.169   0.044  P1   GT1  14  
GT1  O4   O4   O  0  1  N  N  N   7.392  26.312  25.780   3.693  -0.460   1.350  O4   GT1  15  
GT1  O5   O5   O  0  1  N  N  N   7.312  28.683  26.926   3.707  -0.875  -1.140  O5   GT1  16  
GT1  O6   O6   O  0  1  N  N  N   6.899  26.477  28.182   4.306   1.482  -0.142  O6   GT1  17  
GT1  H1   H1   H  0  1  N  N  N  13.424  29.722  31.179  -4.440  -0.247   1.263  H1   GT1  18  
GT1  H2   H2   H  0  1  N  N  N  11.678  29.768  31.319  -0.822  -2.033   1.186  H2   GT1  19  
GT1  H3   H3   H  0  1  N  N  N  10.306  29.581  30.175  -2.601  -2.030   1.235  H3   GT1  20  
GT1  H4   H4   H  0  1  N  N  N  11.782  32.826  29.283  -1.785  -4.472  -1.341  H4   GT1  21  
GT1  H5   H5   H  0  1  N  N  N  10.277  32.000  29.813  -0.853  -4.254   0.160  H5   GT1  22  
GT1  H6   H6   H  0  1  N  N  N  11.649  32.188  30.957  -2.633  -4.251   0.208  H6   GT1  23  
GT1  H7   H7   H  0  1  N  N  N   9.769  28.920  27.995   0.874  -0.755   1.236  H7   GT1  24  
GT1  H8   H8   H  0  1  N  N  N   9.229  27.791  29.285   0.825  -1.146  -0.500  H8   GT1  25  
GT1  H9   H9   H  0  1  N  N  N  11.500  25.899  27.565   0.330   2.263  -0.337  H9   GT1  26  
GT1  H10  H10  H  0  1  N  N  N  15.639  25.942  29.285  -4.520   2.460  -1.311  H10  GT1  27  
GT1  H11  H11  H  0  1  N  N  N  15.954  27.689  29.557  -4.943   2.051   0.369  H11  GT1  28  
GT1  H12  H12  H  0  1  N  N  N  15.390  26.657  30.914  -4.022   3.533   0.018  H12  GT1  29  
GT1  H13  H13  H  0  1  N  N  N   6.903  28.835  26.082   3.532  -0.530  -2.026  H13  GT1  30  
GT1  H14  H14  H  0  1  N  N  N   6.405  25.749  27.823   5.256   1.306  -0.122  H14  GT1  31  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GT1  O4  P1   DOUB  N  N   1  
GT1  O5  P1   SING  N  N   2  
GT1  P1  O2   SING  N  N   3  
GT1  P1  O6   SING  N  N   4  
GT1  O2  C5   SING  N  N   5  
GT1  C8  N1   DOUB  Y  N   6  
GT1  C8  C2   SING  Y  N   7  
GT1  C5  C2   SING  N  N   8  
GT1  N1  C7   SING  Y  N   9  
GT1  C2  C6   DOUB  Y  N  10  
GT1  O3  C3   SING  N  N  11  
GT1  O3  C1   SING  N  N  12  
GT1  C7  C9   SING  N  N  13  
GT1  C7  C4   DOUB  Y  N  14  
GT1  C6  C4   SING  Y  N  15  
GT1  C6  C1   SING  N  N  16  
GT1  C4  O1   SING  N  N  17  
GT1  O1  H1   SING  N  N  18  
GT1  C1  H2   SING  N  N  19  
GT1  C1  H3   SING  N  N  20  
GT1  C3  H4   SING  N  N  21  
GT1  C3  H5   SING  N  N  22  
GT1  C3  H6   SING  N  N  23  
GT1  C5  H7   SING  N  N  24  
GT1  C5  H8   SING  N  N  25  
GT1  C8  H9   SING  N  N  26  
GT1  C9  H10  SING  N  N  27  
GT1  C9  H11  SING  N  N  28  
GT1  C9  H12  SING  N  N  29  
GT1  O5  H13  SING  N  N  30  
GT1  O6  H14  SING  N  N  31  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GT1  SMILES            ACDLabs               12.01  "O=P(O)(O)OCc1cnc(c(O)c1COC)C"  
GT1  InChI             InChI                 1.03   "InChI=1S/C9H14NO6P/c1-6-9(11)8(5-15-2)7(3-10-6)4-16-17(12,13)14/h3,11H,4-5H2,1-2H3,(H2,12,13,14)"  
GT1  InChIKey          InChI                 1.03   RFYDYCIMPLKICN-UHFFFAOYSA-N  
GT1  SMILES_CANONICAL  CACTVS                3.370  "COCc1c(O)c(C)ncc1CO[P](O)(O)=O"  
GT1  SMILES            CACTVS                3.370  "COCc1c(O)c(C)ncc1CO[P](O)(O)=O"  
GT1  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "Cc1c(c(c(cn1)COP(=O)(O)O)COC)O"  
GT1  SMILES            "OpenEye OEToolkits"  1.7.6  "Cc1c(c(c(cn1)COP(=O)(O)O)COC)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GT1  "SYSTEMATIC NAME"  ACDLabs               12.01  "[5-hydroxy-4-(methoxymethyl)-6-methylpyridin-3-yl]methyl dihydrogen phosphate"  
GT1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[4-(methoxymethyl)-6-methyl-5-oxidanyl-pyridin-3-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GT1  "Create component"  2012-04-13  RCSB  
GT1  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GT1
_pdbx_chem_comp_synonyms.name        "ginkgotoxin, phosphorylated"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
