data_GE1
#

_chem_comp.id                                   GE1
_chem_comp.name                                 "2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H14 N2 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;3,4-DIDEOXY-2,6-AMINO-ALPHA-D GALACTOPYRANOSE; 2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexose;
2,6-diamino-2,3,4,6-tetradeoxy-D-erythro-hexose; 2,6-diamino-2,3,4,6-tetradeoxy-erythro-hexose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-08-04
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       146.188
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GE1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1BYJ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  GE1  "3,4-DIDEOXY-2,6-AMINO-ALPHA-D GALACTOPYRANOSE"          PDB  ?  
2  GE1  "2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexose"  PDB  ?  
3  GE1  "2,6-diamino-2,3,4,6-tetradeoxy-D-erythro-hexose"        PDB  ?  
4  GE1  "2,6-diamino-2,3,4,6-tetradeoxy-erythro-hexose"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GE1  C5    C5    C  0  1  N  N  S   9.554   1.870  -2.768  -0.328   0.217   1.024  C5    GE1   1  
GE1  O     O     O  0  1  N  N  N   8.204   1.925  -3.336   0.591  -0.755   0.532  O     GE1   2  
GE1  C1    C1    C  0  1  N  N  S   7.230   2.726  -2.597   0.963  -0.368  -0.788  C1    GE1   3  
GE1  O1    O1    O  0  1  N  Y  N   7.686   4.109  -2.508   1.410   0.988  -0.778  O1    GE1   4  
GE1  C2    C2    C  0  1  N  N  R   7.059   2.114  -1.178  -0.241  -0.499  -1.724  C2    GE1   5  
GE1  N2    N2    N  0  1  N  N  N   6.080   2.852  -0.354   0.151  -0.127  -3.089  N2    GE1   6  
GE1  C3    C3    C  0  1  N  N  N   8.430   2.028  -0.455  -1.354   0.435  -1.238  C3    GE1   7  
GE1  C4    C4    C  0  1  N  N  N   9.495   1.317  -1.318  -1.638   0.134   0.237  C4    GE1   8  
GE1  C6    C6    C  0  1  N  N  N  10.518   1.032  -3.633  -0.606  -0.048   2.505  C6    GE1   9  
GE1  N1    N1    N  0  1  N  N  N  10.331   1.178  -5.086   0.649   0.034   3.262  N1    GE1  10  
GE1  H5    H5    H  0  1  N  N  N   9.958   2.899  -2.742   0.100   1.212   0.909  H5    GE1  11  
GE1  H1    H1    H  0  1  N  N  N   6.262   2.685  -3.140   1.768  -1.012  -1.142  H1    GE1  12  
GE1  HO1   HO1   H  0  1  N  N  N   7.052   4.629  -2.027   2.168   1.028  -0.178  HO1   GE1  13  
GE1  H2    H2    H  0  1  N  N  N   6.672   1.086  -1.302  -0.599  -1.528  -1.715  H2    GE1  14  
GE1  HN21  HN21  H  0  0  N  N  N   5.160   2.839  -0.807   0.882  -0.765  -3.365  HN21  GE1  15  
GE1  HN22  HN22  H  0  0  N  N  N   5.951   2.380   0.548  -0.641  -0.320  -3.682  HN22  GE1  16  
GE1  H31   H31   H  0  1  N  N  N   8.794   3.040  -0.194  -2.256   0.266  -1.826  H31   GE1  17  
GE1  H32   H32   H  0  1  N  N  N   8.328   1.493   0.510  -1.034   1.472  -1.345  H32   GE1  18  
GE1  H41   H41   H  0  1  N  N  N  10.485   1.379  -0.830  -2.057  -0.867   0.331  H41   GE1  19  
GE1  H42   H42   H  0  1  N  N  N   9.243   0.242  -1.348  -2.346   0.865   0.629  H42   GE1  20  
GE1  H61   H61   H  0  1  N  N  N  10.443  -0.038  -3.381  -1.035  -1.043   2.621  H61   GE1  21  
GE1  H62   H62   H  0  1  N  N  N  11.553   1.314  -3.381  -1.307   0.695   2.882  H62   GE1  22  
GE1  HN11  HN11  H  0  0  N  N  N  10.419   2.164  -5.355   0.419  -0.147   4.227  HN11  GE1  23  
GE1  HN12  HN12  H  0  0  N  N  N   9.377   0.905  -5.347   1.225  -0.734   2.952  HN12  GE1  24  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GE1  C5  O     SING  N  N   1  
GE1  C5  C4    SING  N  N   2  
GE1  C5  C6    SING  N  N   3  
GE1  C5  H5    SING  N  N   4  
GE1  O   C1    SING  N  N   5  
GE1  C1  O1    SING  N  N   6  
GE1  C1  C2    SING  N  N   7  
GE1  C1  H1    SING  N  N   8  
GE1  O1  HO1   SING  N  N   9  
GE1  C2  N2    SING  N  N  10  
GE1  C2  C3    SING  N  N  11  
GE1  C2  H2    SING  N  N  12  
GE1  N2  HN21  SING  N  N  13  
GE1  N2  HN22  SING  N  N  14  
GE1  C3  C4    SING  N  N  15  
GE1  C3  H31   SING  N  N  16  
GE1  C3  H32   SING  N  N  17  
GE1  C4  H41   SING  N  N  18  
GE1  C4  H42   SING  N  N  19  
GE1  C6  N1    SING  N  N  20  
GE1  C6  H61   SING  N  N  21  
GE1  C6  H62   SING  N  N  22  
GE1  N1  HN11  SING  N  N  23  
GE1  N1  HN12  SING  N  N  24  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GE1  SMILES            ACDLabs               10.04  "OC1OC(CN)CCC1N"  
GE1  SMILES_CANONICAL  CACTVS                3.341  "NC[C@@H]1CC[C@@H](N)[C@@H](O)O1"  
GE1  SMILES            CACTVS                3.341  "NC[CH]1CC[CH](N)[CH](O)O1"  
GE1  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1C[C@H]([C@H](O[C@@H]1CN)O)N"  
GE1  SMILES            "OpenEye OEToolkits"  1.5.0  "C1CC(C(OC1CN)O)N"  
GE1  InChI             InChI                 1.03   "InChI=1S/C6H14N2O2/c7-3-4-1-2-5(8)6(9)10-4/h4-6,9H,1-3,7-8H2/t4-,5+,6-/m0/s1"  
GE1  InChIKey          InChI                 1.03   FGFITZOBEYBNGG-JKUQZMGJSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GE1  "SYSTEMATIC NAME"  ACDLabs               10.04  "2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranose"  
GE1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S,3R,6S)-3-amino-6-(aminomethyl)oxan-2-ol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GE1  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
GE1  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
GE1  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
GE1  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GE1  "Create component"     1999-08-04  RCSB  
GE1  "Modify descriptor"    2011-06-04  RCSB  
GE1  "Other modification"   2020-07-03  RCSB  
GE1  "Modify name"          2020-07-17  RCSB  
GE1  "Modify synonyms"      2020-07-17  RCSB  
GE1  "Modify linking type"  2020-07-17  RCSB  
##
