data_BD1
# 
_chem_comp.id                                    BD1 
_chem_comp.name                                  "3A,4,7,7A-TETRAHYDRO-BENZO [1,3] DIOXOL-2-ONE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H10 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2003-03-14 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        142.152 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BD1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1HL7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BD1 C1   C1   C 0 1 N N N N N N 111.198 12.406 80.743 -0.672 0.503  -2.291 C1   BD1 1  
BD1 C2   C2   C 0 1 N N N N N N 109.775 12.941 80.771 -1.433 0.222  -1.039 C2   BD1 2  
BD1 C3   C3   C 0 1 N N S N N N 109.273 13.213 82.197 -0.738 -0.809 -0.146 C3   BD1 3  
BD1 O3   O3   O 0 1 N N N N N N 109.518 14.569 82.603 -1.128 -0.458 1.213  O3   BD1 4  
BD1 C4   C4   C 0 1 N N R N N N 109.981 12.369 83.252 0.779  -0.538 -0.083 C4   BD1 5  
BD1 O4   O4   O 0 1 N N N N N N 111.022 13.226 83.759 0.838  0.682  0.659  O4   BD1 6  
BD1 C5   C5   C 0 1 N N N N N N 110.510 11.069 82.641 1.420  -0.468 -1.446 C5   BD1 7  
BD1 C6   C6   C 0 1 N N N N N N 111.567 11.479 81.644 0.575  0.220  -2.471 C6   BD1 8  
BD1 C7   C7   C 0 1 N N R N N N 110.788 14.582 83.306 -0.171 0.508  1.676  C7   BD1 9  
BD1 O1   O1   O 0 1 N N N N N N 110.748 15.518 84.408 0.436  0.042  2.882  O1   BD1 10 
BD1 H1   H1   H 0 1 N N N N N N 111.891 12.760 80.021 -1.202 0.976  -3.105 H1   BD1 11 
BD1 H2C1 1H2C H 0 0 N N N N N N 109.741 13.881 80.201 -2.423 -0.150 -1.305 H2C1 BD1 12 
BD1 H2C2 2H2C H 0 0 N N N N N N 109.122 12.174 80.329 -1.548 1.151  -0.481 H2C2 BD1 13 
BD1 H3   H3   H 0 1 N N N N N N 108.200 12.975 82.146 -0.980 -1.838 -0.415 H3   BD1 14 
BD1 H4   H4   H 0 1 N N N N N N 109.317 12.040 84.065 1.276  -1.310 0.503  H4   BD1 15 
BD1 H5C1 1H5C H 0 0 N N N N N N 109.698 10.526 82.136 1.615  -1.487 -1.778 H5C1 BD1 16 
BD1 H5C2 2H5C H 0 0 N N N N N N 110.920 10.399 83.411 2.371  0.059  -1.364 H5C2 BD1 17 
BD1 H6   H6   H 0 1 N N N N N N 112.543 11.061 81.654 1.032  0.495  -3.410 H6   BD1 18 
BD1 H7   H7   H 0 1 N N N N N N 111.609 14.912 82.652 -0.671 1.458  1.861  H7   BD1 19 
BD1 HA   HA   H 0 1 N N N N N N 109.806 15.715 84.640 1.066  0.722  3.159  HA   BD1 20 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BD1 C1 C2   SING N N 1  
BD1 C1 C6   DOUB N N 2  
BD1 C1 H1   SING N N 3  
BD1 C2 C3   SING N N 4  
BD1 C2 H2C1 SING N N 5  
BD1 C2 H2C2 SING N N 6  
BD1 C3 O3   SING N N 7  
BD1 C3 C4   SING N N 8  
BD1 C3 H3   SING N N 9  
BD1 O3 C7   SING N N 10 
BD1 C4 O4   SING N N 11 
BD1 C4 C5   SING N N 12 
BD1 C4 H4   SING N N 13 
BD1 O4 C7   SING N N 14 
BD1 C5 C6   SING N N 15 
BD1 C5 H5C1 SING N N 16 
BD1 C5 H5C2 SING N N 17 
BD1 C6 H6   SING N N 18 
BD1 C7 O1   SING N N 19 
BD1 C7 H7   SING N N 20 
BD1 O1 HA   SING N N 21 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BD1 SMILES           ACDLabs              10.04 O1C2CC=CCC2OC1O                                                        
BD1 SMILES_CANONICAL CACTVS               3.341 "O[C@@H]1O[C@H]2CC=CC[C@H]2O1"                                         
BD1 SMILES           CACTVS               3.341 "O[CH]1O[CH]2CC=CC[CH]2O1"                                             
BD1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1C=CC[C@@H]2[C@H]1OC(O2)O"                                           
BD1 SMILES           "OpenEye OEToolkits" 1.5.0 "C1C=CCC2C1OC(O2)O"                                                    
BD1 InChI            InChI                1.03  "InChI=1S/C7H10O3/c8-7-9-5-3-1-2-4-6(5)10-7/h1-2,5-8H,3-4H2/t5-,6+,7+" 
BD1 InChIKey         InChI                1.03  VYBGCFNFGGLKAA-ZMONIFLSSA-N                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BD1 "SYSTEMATIC NAME" ACDLabs              10.04 "(2r,3aR,7aS)-3a,4,7,7a-tetrahydro-1,3-benzodioxol-2-ol" 
BD1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3aR,7aS)-3a,4,7,7a-tetrahydro-1,3-benzodioxol-2-ol"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BD1 "Create component"  2003-03-14 EBI  
BD1 "Modify descriptor" 2011-06-04 RCSB 
BD1 "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            BD1 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C7 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
