data_A1IO1
# 
_chem_comp.id                                    A1IO1 
_chem_comp.name                                  "(3~{S})-3-azanyl-4-[(3~{R},4~{R},6~{S})-3-[1,3-dimethyl-2,6-bis(oxidanylidene)purin-7-yl]-4-methyl-4,6-bis(oxidanyl)azepan-1-yl]-4-oxidanylidene-butanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H26 N6 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-09-19 
_chem_comp.pdbx_modified_date                    2024-11-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        438.435 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1IO1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9GUD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1IO1 C30  C1  C 0 1 N N N N N N 83.672 -31.597 20.789 0.942  0.948  -1.963 C30  A1IO1 1  
A1IO1 C26  C2  C 0 1 N N N N N N 89.584 -34.546 18.652 6.375  -0.302 1.187  C26  A1IO1 2  
A1IO1 C21  C3  C 0 1 N N N N N N 89.501 -32.532 20.564 2.916  1.116  0.470  C21  A1IO1 3  
A1IO1 C10  C4  C 0 1 Y N N N N N 84.247 -30.713 16.828 -3.841 1.168  -0.018 C10  A1IO1 4  
A1IO1 C13  C5  C 0 1 N N R N N N 86.017 -31.680 19.920 -0.472 -0.196 -0.290 C13  A1IO1 5  
A1IO1 C02  C6  C 0 1 N N N N N N 83.949 -28.211 16.122 -5.599 -0.210 0.764  C02  A1IO1 6  
A1IO1 C04  C7  C 0 1 N N N N N N 85.174 -28.941 18.267 -3.449 -1.131 0.609  C04  A1IO1 7  
A1IO1 C06  C8  C 0 1 Y N N N N N 84.930 -30.371 17.961 -2.961 0.103  0.129  C06  A1IO1 8  
A1IO1 C08  C9  C 0 1 Y N N N N N 84.783 -32.541 17.880 -1.883 1.854  -0.632 C08  A1IO1 9  
A1IO1 C12  C10 C 0 1 N N N N N N 83.034 -30.112 14.700 -6.124 2.088  0.155  C12  A1IO1 10 
A1IO1 C14  C11 C 0 1 N N R N N N 85.091 -32.025 21.102 0.045  -0.264 -1.706 C14  A1IO1 11 
A1IO1 C16  C12 C 0 1 N N N N N N 85.064 -33.534 21.490 0.845  -1.539 -1.976 C16  A1IO1 12 
A1IO1 C17  C13 C 0 1 N N S N N N 86.331 -34.103 22.126 2.216  -1.375 -1.457 C17  A1IO1 13 
A1IO1 C19  C14 C 0 1 N N N N N N 87.604 -33.266 22.078 2.371  -1.199 0.061  C19  A1IO1 14 
A1IO1 C23  C15 C 0 1 N N S N N N 90.065 -32.060 19.216 4.364  0.781  0.220  C23  A1IO1 15 
A1IO1 C25  C16 C 0 1 N N N N N N 90.277 -33.205 18.232 4.964  0.144  1.475  C25  A1IO1 16 
A1IO1 C29  C17 C 0 1 N N N N N N 87.106 -32.708 19.643 0.561  0.491  0.636  C29  A1IO1 17 
A1IO1 C31  C18 C 0 1 N N N N N N 84.959 -26.539 17.724 -5.272 -2.525 1.416  C31  A1IO1 18 
A1IO1 N03  N1  N 0 1 N N N N N N 84.701 -27.904 17.380 -4.758 -1.247 0.917  N03  A1IO1 19 
A1IO1 N07  N2  N 0 1 Y N N N N N 85.245 -31.533 18.606 -1.723 0.567  -0.268 N07  A1IO1 20 
A1IO1 N09  N3  N 0 1 Y N N N N N 84.178 -32.069 16.810 -3.135 2.203  -0.482 N09  A1IO1 21 
A1IO1 N11  N4  N 0 1 N N N N N N 83.738 -29.684 15.880 -5.175 0.983  0.307  N11  A1IO1 22 
A1IO1 N20  N5  N 0 1 N N N N N N 88.077 -32.842 20.750 1.978  0.152  0.389  N20  A1IO1 23 
A1IO1 N24  N6  N 0 1 N N N N N N 91.342 -31.398 19.428 5.102  2.009  -0.106 N24  A1IO1 24 
A1IO1 O01  O1  O 0 1 N N N N N N 83.548 -27.368 15.372 -6.774 -0.354 1.044  O01  A1IO1 25 
A1IO1 O05  O2  O 0 1 N N N N N N 85.773 -28.641 19.264 -2.697 -2.078 0.753  O05  A1IO1 26 
A1IO1 O15  O3  O 0 1 N N N N N N 85.511 -31.284 22.212 -1.064 -0.217 -2.605 O15  A1IO1 27 
A1IO1 O18  O4  O 0 1 N N N N N N 86.025 -34.319 23.520 2.973  -2.523 -1.846 O18  A1IO1 28 
A1IO1 O22  O5  O 0 1 N N N N N N 90.278 -32.643 21.551 2.595  2.253  0.744  O22  A1IO1 29 
A1IO1 O27  O6  O 0 1 N N N N N N 90.064 -35.245 19.590 7.102  -0.892 2.149  O27  A1IO1 30 
A1IO1 O28  O7  O 0 1 N N N N N N 88.545 -34.931 18.045 6.851  -0.129 0.090  O28  A1IO1 31 
A1IO1 H301 H1  H 0 0 N N N N N N 83.018 -31.847 21.637 1.851  0.860  -1.367 H301 A1IO1 32 
A1IO1 H302 H2  H 0 0 N N N N N N 83.647 -30.511 20.614 1.204  0.988  -3.021 H302 A1IO1 33 
A1IO1 H303 H3  H 0 0 N N N N N N 83.321 -32.122 19.888 0.412  1.859  -1.685 H303 A1IO1 34 
A1IO1 H131 H4  H 0 0 N N N N N N 86.502 -30.718 20.140 -0.661 -1.207 0.071  H131 A1IO1 35 
A1IO1 H081 H5  H 0 0 N N N N N N 84.887 -33.587 18.128 -1.096 2.500  -0.992 H081 A1IO1 36 
A1IO1 H123 H6  H 0 0 N N N N N N 82.730 -29.232 14.114 -7.118 1.758  0.457  H123 A1IO1 37 
A1IO1 H122 H7  H 0 0 N N N N N N 83.693 -30.748 14.090 -5.813 2.924  0.781  H122 A1IO1 38 
A1IO1 H121 H8  H 0 0 N N N N N N 82.141 -30.684 14.993 -6.149 2.405  -0.888 H121 A1IO1 39 
A1IO1 H161 H9  H 0 0 N N N N N N 84.863 -34.110 20.574 0.366  -2.382 -1.478 H161 A1IO1 40 
A1IO1 H162 H10 H 0 0 N N N N N N 84.239 -33.680 22.203 0.883  -1.724 -3.049 H162 A1IO1 41 
A1IO1 H171 H11 H 0 0 N N N N N N 86.543 -35.072 21.651 2.657  -0.505 -1.943 H171 A1IO1 42 
A1IO1 H192 H12 H 0 0 N N N N N N 87.426 -32.358 22.672 1.728  -1.908 0.583  H192 A1IO1 43 
A1IO1 H191 H13 H 0 0 N N N N N N 88.407 -33.857 22.543 3.410  -1.362 0.348  H191 A1IO1 44 
A1IO1 H231 H14 H 0 0 N N N N N N 89.353 -31.348 18.774 4.437  0.081  -0.612 H231 A1IO1 45 
A1IO1 H251 H15 H 0 0 N N N N N N 89.875 -32.900 17.255 4.364  -0.717 1.769  H251 A1IO1 46 
A1IO1 H252 H16 H 0 0 N N N N N N 91.358 -33.388 18.143 4.973  0.874  2.285  H252 A1IO1 47 
A1IO1 H292 H17 H 0 0 N N N N N N 87.650 -32.405 18.736 0.447  1.570  0.530  H292 A1IO1 48 
A1IO1 H291 H18 H 0 0 N N N N N N 86.630 -33.685 19.476 0.324  0.226  1.666  H291 A1IO1 49 
A1IO1 H312 H19 H 0 0 N N N N N N 85.517 -26.498 18.671 -5.198 -2.547 2.504  H312 A1IO1 50 
A1IO1 H313 H20 H 0 0 N N N N N N 85.553 -26.066 16.928 -6.314 -2.638 1.120  H313 A1IO1 51 
A1IO1 H311 H21 H 0 0 N N N N N N 84.005 -26.003 17.837 -4.684 -3.342 0.996  H311 A1IO1 52 
A1IO1 H1   H22 H 0 1 N N N N N N 91.709 -31.091 18.550 5.049  2.674  0.650  H1   A1IO1 53 
A1IO1 H242 H23 H 0 0 N N N N N N 91.213 -30.609 20.029 6.061  1.803  -0.341 H242 A1IO1 54 
A1IO1 H151 H25 H 0 0 N N N N N N 84.953 -31.481 22.955 -0.814 -0.233 -3.539 H151 A1IO1 55 
A1IO1 H181 H26 H 0 0 N N N N N N 86.788 -34.675 23.961 3.893  -2.506 -1.549 H181 A1IO1 56 
A1IO1 H2   H27 H 0 1 N N N N N N 89.530 -36.021 19.712 8.001  -1.161 1.916  H2   A1IO1 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1IO1 C02 O01  DOUB N N 1  
A1IO1 N03 C02  SING N N 2  
A1IO1 O05 C04  DOUB N N 3  
A1IO1 C06 C04  SING N N 4  
A1IO1 N07 C06  SING Y N 5  
A1IO1 N09 C08  DOUB Y N 6  
A1IO1 C10 N09  SING Y N 7  
A1IO1 N11 C10  SING N N 8  
A1IO1 C12 N11  SING N N 9  
A1IO1 C08 N07  SING Y N 10 
A1IO1 C13 N07  SING N N 11 
A1IO1 C14 C13  SING N N 12 
A1IO1 O15 C14  SING N N 13 
A1IO1 C17 C16  SING N N 14 
A1IO1 O18 C17  SING N N 15 
A1IO1 C19 C17  SING N N 16 
A1IO1 N20 C19  SING N N 17 
A1IO1 O22 C21  DOUB N N 18 
A1IO1 C23 C21  SING N N 19 
A1IO1 N24 C23  SING N N 20 
A1IO1 C25 C23  SING N N 21 
A1IO1 C26 C25  SING N N 22 
A1IO1 O27 C26  SING N N 23 
A1IO1 O28 C26  DOUB N N 24 
A1IO1 C21 N20  SING N N 25 
A1IO1 C29 N20  SING N N 26 
A1IO1 C16 C14  SING N N 27 
A1IO1 C30 C14  SING N N 28 
A1IO1 C04 N03  SING N N 29 
A1IO1 C31 N03  SING N N 30 
A1IO1 C02 N11  SING N N 31 
A1IO1 C06 C10  DOUB Y N 32 
A1IO1 C13 C29  SING N N 33 
A1IO1 C30 H301 SING N N 34 
A1IO1 C30 H302 SING N N 35 
A1IO1 C30 H303 SING N N 36 
A1IO1 C13 H131 SING N N 37 
A1IO1 C08 H081 SING N N 38 
A1IO1 C12 H123 SING N N 39 
A1IO1 C12 H122 SING N N 40 
A1IO1 C12 H121 SING N N 41 
A1IO1 C16 H161 SING N N 42 
A1IO1 C16 H162 SING N N 43 
A1IO1 C17 H171 SING N N 44 
A1IO1 C19 H192 SING N N 45 
A1IO1 C19 H191 SING N N 46 
A1IO1 C23 H231 SING N N 47 
A1IO1 C25 H251 SING N N 48 
A1IO1 C25 H252 SING N N 49 
A1IO1 C29 H292 SING N N 50 
A1IO1 C29 H291 SING N N 51 
A1IO1 C31 H312 SING N N 52 
A1IO1 C31 H313 SING N N 53 
A1IO1 C31 H311 SING N N 54 
A1IO1 N24 H1   SING N N 55 
A1IO1 N24 H242 SING N N 56 
A1IO1 O15 H151 SING N N 57 
A1IO1 O18 H181 SING N N 58 
A1IO1 O27 H2   SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1IO1 InChI            InChI                1.06  "InChI=1S/C18H26N6O7/c1-18(31)5-9(25)6-23(15(28)10(19)4-12(26)27)7-11(18)24-8-20-14-13(24)16(29)22(3)17(30)21(14)2/h8-11,25,31H,4-7,19H2,1-3H3,(H,26,27)/t9-,10-,11+,18+/m0/s1" 
A1IO1 InChIKey         InChI                1.06  PXCRTYLWTBRTOT-JXKOVVAVSA-N                                                                                                                                                     
A1IO1 SMILES_CANONICAL CACTVS               3.385 "CN1C(=O)N(C)c2ncn([C@@H]3CN(C[C@@H](O)C[C@@]3(C)O)C(=O)[C@@H](N)CC(O)=O)c2C1=O"                                                                                                
A1IO1 SMILES           CACTVS               3.385 "CN1C(=O)N(C)c2ncn([CH]3CN(C[CH](O)C[C]3(C)O)C(=O)[CH](N)CC(O)=O)c2C1=O"                                                                                                        
A1IO1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@]1(C[C@@H](CN(C[C@H]1n2cnc3c2C(=O)N(C(=O)N3C)C)C(=O)[C@H](CC(=O)O)N)O)O"                                                                                                   
A1IO1 SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(CC(CN(CC1n2cnc3c2C(=O)N(C(=O)N3C)C)C(=O)C(CC(=O)O)N)O)O"                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           A1IO1 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{S})-3-azanyl-4-[(3~{R},4~{R},6~{S})-3-[1,3-dimethyl-2,6-bis(oxidanylidene)purin-7-yl]-4-methyl-4,6-bis(oxidanyl)azepan-1-yl]-4-oxidanylidene-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1IO1 "Create component" 2024-09-19 PDBE 
A1IO1 "Initial release"  2024-12-04 RCSB 
# 
