data_9V1
# 
_chem_comp.id                                    9V1 
_chem_comp.name                                  
;3-[2-[[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]
methyl]-5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]pro
panoic acid
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H40 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Billeverdin IXa, bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-06-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        588.694 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9V1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5VIV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9V1 O2D O1  O 0 1 N N N N N N 7.650  3.652  -10.160 -2.154  4.779  -0.706 O2D 9V1 1  
9V1 CGD C1  C 0 1 N N N N N N 7.065  2.611  -10.302 -1.179  4.323  0.096  CGD 9V1 2  
9V1 O1D O2  O 0 1 N N N N N N 7.309  1.792  -11.181 -0.988  4.842  1.171  O1D 9V1 3  
9V1 CBD C2  C 0 1 N N N N N N 5.969  2.275  -9.308  -0.324  3.163  -0.343 CBD 9V1 4  
9V1 CAD C3  C 0 1 N N N N N N 4.592  2.463  -9.944  0.703   2.845  0.746  CAD 9V1 5  
9V1 C3D C4  C 0 1 Y N N N N N 3.502  2.415  -8.909  1.559   1.685  0.306  C3D 9V1 6  
9V1 C2D C5  C 0 1 Y N N N N N 2.682  3.518  -8.411  2.766   1.766  -0.416 C2D 9V1 7  
9V1 CMD C6  C 0 1 N N N N N N 2.728  4.958  -8.797  3.438   3.028  -0.891 CMD 9V1 8  
9V1 C1D C7  C 0 1 Y N N N N N 1.784  2.888  -7.439  3.209   0.506  -0.604 C1D 9V1 9  
9V1 CHD C8  C 0 1 N N N N N N 0.794  3.692  -6.683  4.469   0.112  -1.330 CHD 9V1 10 
9V1 C4C C9  C 0 1 N N N N N N 0.158  3.430  -5.529  5.636   0.173  -0.379 C4C 9V1 11 
9V1 C3C C10 C 0 1 N N R N N N -0.847 4.386  -4.988  7.058   -0.219 -0.720 C3C 9V1 12 
9V1 CAC C11 C 0 1 N N N N N N -0.066 5.663  -4.660  7.132   -1.697 -1.109 CAC 9V1 13 
9V1 CBC C12 C 0 1 N N N N N N -1.091 6.766  -4.334  8.550   -2.029 -1.579 CBC 9V1 14 
9V1 C2C C13 C 0 1 N N R N N N -1.358 3.669  -3.758  7.820   0.037  0.598  C2C 9V1 15 
9V1 CMC C14 C 0 1 N N N N N N -2.839 3.339  -3.752  8.901   1.102  0.400  CMC 9V1 16 
9V1 C1C C15 C 0 1 N N N N N N -0.527 2.439  -3.727  6.730   0.543  1.520  C1C 9V1 17 
9V1 OC  O3  O 0 1 N N N N N N -0.616 1.605  -2.891  6.880   0.873  2.678  OC  9V1 18 
9V1 NC  N1  N 0 1 N N N N N N 0.313  2.401  -4.734  5.573   0.570  0.844  NC  9V1 19 
9V1 C4D C16 C 0 1 Y N N N N N 2.991  1.256  -8.184  1.313   0.379  0.537  C4D 9V1 20 
9V1 ND  N2  N 0 1 Y N N N N N 1.985  1.566  -7.317  2.319   -0.350 -0.025 ND  9V1 21 
9V1 CHA C17 C 0 1 N N N N N N 3.554  -0.087 -8.418  0.129   -0.179 1.283  CHA 9V1 22 
9V1 C1A C18 C 0 1 Y N N N N N 3.212  -1.402 -7.857  -1.036  -0.327 0.339  C1A 9V1 23 
9V1 C2A C19 C 0 1 Y N N N N N 3.797  -2.653 -8.333  -1.272  -1.384 -0.465 C2A 9V1 24 
9V1 CAA C20 C 0 1 N N N N N N 4.804  -2.905 -9.411  -0.424  -2.624 -0.580 CAA 9V1 25 
9V1 CBA C21 C 0 1 N N N N N N 6.137  -2.923 -8.686  -0.908  -3.668 0.429  CBA 9V1 26 
9V1 CGA C22 C 0 1 N N N N N N 7.346  -3.233 -9.504  -0.059  -4.909 0.314  CGA 9V1 27 
9V1 O2A O4  O 0 1 N N N N N N 7.196  -3.343 -10.725 0.840   -4.953 -0.492 O2A 9V1 28 
9V1 O1A O5  O 0 1 N N N N N N 8.387  -3.303 -8.970  -0.303  -5.964 1.107  O1A 9V1 29 
9V1 C3A C23 C 0 1 Y N N N N N 3.216  -3.664 -7.493  -2.458  -1.116 -1.176 C3A 9V1 30 
9V1 CMA C24 C 0 1 N N N N N N 3.443  -5.130 -7.559  -3.111  -2.016 -2.193 CMA 9V1 31 
9V1 C4A C25 C 0 1 Y N N N N N 2.353  -2.883 -6.603  -2.901  0.095  -0.781 C4A 9V1 32 
9V1 NA  N3  N 0 1 Y N N N N N 2.361  -1.579 -6.837  -2.036  0.581  0.154  NA  9V1 33 
9V1 CHB C26 C 0 1 N N N N N N 1.487  -3.416 -5.539  -4.142  0.788  -1.281 CHB 9V1 34 
9V1 C1B C27 C 0 1 N N N N N N 1.848  -4.571 -4.667  -5.336  0.310  -0.494 C1B 9V1 35 
9V1 C2B C28 C 0 1 N N N N N N 0.861  -5.274 -3.832  -6.663  0.750  -0.703 C2B 9V1 36 
9V1 CMB C29 C 0 1 N N N N N N -0.591 -4.949 -3.724  -7.120  1.755  -1.729 CMB 9V1 37 
9V1 C3B C30 C 0 1 N N N N N N 1.647  -6.315 -3.209  -7.456  0.094  0.197  C3B 9V1 38 
9V1 CAB C31 C 0 1 N N N N N N 1.112  -7.269 -2.219  -8.858  0.215  0.359  CAB 9V1 39 
9V1 CBB C32 C 0 1 N N N N N N 1.686  -8.339 -1.790  -9.490  -0.506 1.299  CBB 9V1 40 
9V1 C4B C33 C 0 1 N N N N N N 2.989  -6.080 -3.736  -6.516  -0.784 0.978  C4B 9V1 41 
9V1 OB  O6  O 0 1 N N N N N N 3.961  -6.764 -3.423  -6.811  -1.538 1.882  OB  9V1 42 
9V1 NB  N4  N 0 1 N N N N N N 3.083  -5.063 -4.590  -5.285  -0.574 0.473  NB  9V1 43 
9V1 H1  H1  H 0 1 N N N N N N 8.320  3.733  -10.829 -2.677  5.525  -0.380 H1  9V1 44 
9V1 H2  H2  H 0 1 N N N N N N 6.080  1.229  -8.987  -0.954  2.290  -0.515 H2  9V1 45 
9V1 H3  H3  H 0 1 N N N N N N 6.057  2.937  -8.434  0.195   3.423  -1.266 H3  9V1 46 
9V1 H4  H4  H 0 1 N N N N N N 4.562  3.438  -10.452 1.333   3.717  0.917  H4  9V1 47 
9V1 H5  H5  H 0 1 N N N N N N 4.424  1.662  -10.679 0.184   2.584  1.669  H5  9V1 48 
9V1 H6  H6  H 0 1 N N N N N N 2.047  5.133  -9.643  4.124   3.385  -0.124 H6  9V1 49 
9V1 H7  H7  H 0 1 N N N N N N 2.417  5.577  -7.942  3.992   2.822  -1.807 H7  9V1 50 
9V1 H8  H8  H 0 1 N N N N N N 3.754  5.226  -9.090  2.683   3.790  -1.087 H8  9V1 51 
9V1 H9  H9  H 0 1 N N N N N N 1.314  4.642  -6.491  4.365   -0.903 -1.714 H9  9V1 52 
9V1 H10 H10 H 0 1 N N N N N N -0.020 3.858  -7.404  4.641   0.798  -2.159 H10 9V1 53 
9V1 H11 H11 H 0 1 N N N N N N -1.656 4.585  -5.707  7.447   0.409  -1.522 H11 9V1 54 
9V1 H12 H12 H 0 1 N N N N N N 0.588  5.490  -3.792  6.882   -2.313 -0.245 H12 9V1 55 
9V1 H13 H13 H 0 1 N N N N N N 0.544  5.962  -5.525  6.426   -1.896 -1.915 H13 9V1 56 
9V1 H14 H14 H 0 1 N N N N N N -0.562 7.700  -4.093  9.243   -1.926 -0.744 H14 9V1 57 
9V1 H15 H15 H 0 1 N N N N N N -1.744 6.929  -5.204  8.578   -3.053 -1.951 H15 9V1 58 
9V1 H16 H16 H 0 1 N N N N N N -1.700 6.457  -3.472  8.838   -1.345 -2.377 H16 9V1 59 
9V1 H17 H17 H 0 1 N N N N N N -1.130 4.280  -2.872  8.255   -0.887 0.978  H17 9V1 60 
9V1 H18 H18 H 0 1 N N N N N N -3.096 2.822  -2.816  8.438   2.034  0.075  H18 9V1 61 
9V1 H19 H19 H 0 1 N N N N N N -3.422 4.269  -3.830  9.425   1.266  1.342  H19 9V1 62 
9V1 H20 H20 H 0 1 N N N N N N -3.073 2.687  -4.607  9.610   0.765  -0.356 H20 9V1 63 
9V1 H21 H21 H 0 1 N N N N N N 1.496  0.937  -6.713  2.392   -1.317 -0.011 H21 9V1 64 
9V1 H22 H22 H 0 1 N N N N N N 3.442  -0.230 -9.503  0.387   -1.153 1.698  H22 9V1 65 
9V1 H23 H23 H 0 1 N N N N N N 4.620  0.031  -8.172  -0.143  0.500  2.092  H23 9V1 66 
9V1 H24 H24 H 0 1 N N N N N N 4.780  -2.101 -10.162 -0.506  -3.029 -1.589 H24 9V1 67 
9V1 H25 H25 H 0 1 N N N N N N 4.615  -3.871 -9.902  0.616   -2.374 -0.373 H25 9V1 68 
9V1 H26 H26 H 0 1 N N N N N N 6.072  -3.679 -7.889  -0.825  -3.264 1.438  H26 9V1 69 
9V1 H27 H27 H 0 1 N N N N N N 6.285  -1.929 -8.238  -1.948  -3.919 0.222  H27 9V1 70 
9V1 H28 H28 H 0 1 N N N N N N 9.066  -3.453 -9.617  0.268   -6.737 0.996  H28 9V1 71 
9V1 H29 H29 H 0 1 N N N N N N 4.286  -5.401 -6.907  -3.818  -2.678 -1.691 H29 9V1 72 
9V1 H30 H30 H 0 1 N N N N N N 2.537  -5.657 -7.224  -3.641  -1.410 -2.928 H30 9V1 73 
9V1 H31 H31 H 0 1 N N N N N N 3.674  -5.419 -8.595  -2.349  -2.612 -2.694 H31 9V1 74 
9V1 H32 H32 H 0 1 N N N N N N 1.841  -0.875 -6.354  -2.116  1.434  0.609  H32 9V1 75 
9V1 H33 H33 H 0 1 N N N N N N 1.302  -2.574 -4.856  -4.032  1.865  -1.156 H33 9V1 76 
9V1 H34 H34 H 0 1 N N N N N N 0.547  -3.700 -6.035  -4.287  0.558  -2.336 H34 9V1 77 
9V1 H35 H35 H 0 1 N N N N N N -1.072 -5.647 -3.024  -7.374  1.240  -2.655 H35 9V1 78 
9V1 H36 H36 H 0 1 N N N N N N -0.710 -3.920 -3.355  -7.997  2.283  -1.354 H36 9V1 79 
9V1 H37 H37 H 0 1 N N N N N N -1.062 -5.040 -4.714  -6.319  2.470  -1.918 H37 9V1 80 
9V1 H38 H38 H 0 1 N N N N N N 0.137  -7.047 -1.811  -9.419  0.888  -0.273 H38 9V1 81 
9V1 H39 H39 H 0 1 N N N N N N 1.191  -8.962 -1.059  -8.930  -1.179 1.931  H39 9V1 82 
9V1 H40 H40 H 0 1 N N N N N N 2.662  -8.614 -2.161  -10.559 -0.414 1.422  H40 9V1 83 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9V1 O1D CGD DOUB N N 1  
9V1 O2A CGA DOUB N N 2  
9V1 CGD O2D SING N N 3  
9V1 CGD CBD SING N N 4  
9V1 CAD CBD SING N N 5  
9V1 CAD C3D SING N N 6  
9V1 CGA O1A SING N N 7  
9V1 CGA CBA SING N N 8  
9V1 CAA CBA SING N N 9  
9V1 CAA C2A SING N N 10 
9V1 C3D C2D SING Y N 11 
9V1 C3D C4D DOUB Y N 12 
9V1 CMD C2D SING N N 13 
9V1 CHA C4D SING N N 14 
9V1 CHA C1A SING N N 15 
9V1 C2D C1D DOUB Y N 16 
9V1 C2A C1A DOUB Y N 17 
9V1 C2A C3A SING Y N 18 
9V1 C4D ND  SING Y N 19 
9V1 C1A NA  SING Y N 20 
9V1 CMA C3A SING N N 21 
9V1 C3A C4A DOUB Y N 22 
9V1 C1D ND  SING Y N 23 
9V1 C1D CHD SING N N 24 
9V1 NA  C4A SING Y N 25 
9V1 CHD C4C SING N N 26 
9V1 C4A CHB SING N N 27 
9V1 CHB C1B SING N N 28 
9V1 C4C C3C SING N N 29 
9V1 C4C NC  DOUB N N 30 
9V1 C3C CAC SING N N 31 
9V1 C3C C2C SING N N 32 
9V1 NC  C1C SING N N 33 
9V1 C1B NB  DOUB N N 34 
9V1 C1B C2B SING N N 35 
9V1 CAC CBC SING N N 36 
9V1 NB  C4B SING N N 37 
9V1 C2B CMB SING N N 38 
9V1 C2B C3B DOUB N N 39 
9V1 C2C CMC SING N N 40 
9V1 C2C C1C SING N N 41 
9V1 C4B OB  DOUB N N 42 
9V1 C4B C3B SING N N 43 
9V1 C1C OC  DOUB N N 44 
9V1 C3B CAB SING N N 45 
9V1 CAB CBB DOUB N N 46 
9V1 O2D H1  SING N N 47 
9V1 CBD H2  SING N N 48 
9V1 CBD H3  SING N N 49 
9V1 CAD H4  SING N N 50 
9V1 CAD H5  SING N N 51 
9V1 CMD H6  SING N N 52 
9V1 CMD H7  SING N N 53 
9V1 CMD H8  SING N N 54 
9V1 CHD H9  SING N N 55 
9V1 CHD H10 SING N N 56 
9V1 C3C H11 SING N N 57 
9V1 CAC H12 SING N N 58 
9V1 CAC H13 SING N N 59 
9V1 CBC H14 SING N N 60 
9V1 CBC H15 SING N N 61 
9V1 CBC H16 SING N N 62 
9V1 C2C H17 SING N N 63 
9V1 CMC H18 SING N N 64 
9V1 CMC H19 SING N N 65 
9V1 CMC H20 SING N N 66 
9V1 ND  H21 SING N N 67 
9V1 CHA H22 SING N N 68 
9V1 CHA H23 SING N N 69 
9V1 CAA H24 SING N N 70 
9V1 CAA H25 SING N N 71 
9V1 CBA H26 SING N N 72 
9V1 CBA H27 SING N N 73 
9V1 O1A H28 SING N N 74 
9V1 CMA H29 SING N N 75 
9V1 CMA H30 SING N N 76 
9V1 CMA H31 SING N N 77 
9V1 NA  H32 SING N N 78 
9V1 CHB H33 SING N N 79 
9V1 CHB H34 SING N N 80 
9V1 CMB H35 SING N N 81 
9V1 CMB H36 SING N N 82 
9V1 CMB H37 SING N N 83 
9V1 CAB H38 SING N N 84 
9V1 CBB H39 SING N N 85 
9V1 CBB H40 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9V1 InChI            InChI                1.03  "InChI=1S/C33H40N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h8,19-20,34-35H,2,7,9-15H2,1,3-6H3,(H,38,39)(H,40,41)/t19-,20-/m1/s1" 
9V1 InChIKey         InChI                1.03  FCSIENOPZMSJPT-WOJBJXKFSA-N                                                                                                                                                                                                     
9V1 SMILES_CANONICAL CACTVS               3.385 "CC[C@@H]1[C@@H](C)C(=O)N=C1Cc2[nH]c(Cc3[nH]c(CC4=NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)c(CCC(O)=O)c2C"                                                                                                                               
9V1 SMILES           CACTVS               3.385 "CC[CH]1[CH](C)C(=O)N=C1Cc2[nH]c(Cc3[nH]c(CC4=NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)c(CCC(O)=O)c2C"                                                                                                                                   
9V1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC[C@@H]1[C@H](C(=O)N=C1Cc2c(c(c([nH]2)Cc3c(c(c([nH]3)CC4=NC(=O)C(=C4C)C=C)C)CCC(=O)O)CCC(=O)O)C)C"                                                                                                                            
9V1 SMILES           "OpenEye OEToolkits" 2.0.6 "CCC1C(C(=O)N=C1Cc2c(c(c([nH]2)Cc3c(c(c([nH]3)CC4=NC(=O)C(=C4C)C=C)C)CCC(=O)O)CCC(=O)O)C)C"                                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           9V1 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "3-[2-[[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9V1 "Create component" 2017-06-13 RCSB 
9V1 "Initial release"  2017-06-21 RCSB 
9V1 "Modify synonyms"  2020-06-05 PDBE 
9V1 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      9V1 
_pdbx_chem_comp_synonyms.name         "Billeverdin IXa, bound form" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 9V1 CYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" CAC SG ? ? 
2 9V1 CYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" CBC SG ? ? 
# 
