data_9R1
# 
_chem_comp.id                                    9R1 
_chem_comp.name                                  "(2S)-2-aminooctanedioic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C8 H15 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-06-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        189.209 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9R1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5VWY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9R1 N   N   N 0 1 N N N Y Y N -22.424 17.446 7.973  2.852  1.781  -0.206 N   9R1 1  
9R1 CA  CA  C 0 1 N N S Y N N -21.185 18.189 8.039  2.842  0.437  0.387  CA  9R1 2  
9R1 C   C   C 0 1 N N N Y N Y -20.058 17.585 7.206  4.131  -0.269 0.055  C   9R1 3  
9R1 O   O   O 0 1 N N N Y N Y -19.373 18.268 6.444  4.805  0.110  -0.874 O   9R1 4  
9R1 CB  CB  C 0 1 N N N N N N -20.739 18.315 9.477  1.664  -0.361 -0.178 CB  9R1 5  
9R1 CG  CG  C 0 1 N N N N N N -19.537 19.244 9.587  0.351  0.286  0.265  CG  9R1 6  
9R1 CD  CD  C 0 1 N N N N N N -18.995 19.418 10.989 -0.826 -0.512 -0.300 CD  9R1 7  
9R1 CE  CE  C 0 1 N N N N N N -18.530 18.086 11.555 -2.140 0.135  0.142  CE  9R1 8  
9R1 CZ  CZ  C 0 1 N N N N N N -18.220 18.236 13.014 -3.317 -0.662 -0.422 CZ  9R1 9  
9R1 CN  CN  C 0 1 N N N N N N -17.025 19.129 13.269 -4.611 -0.025 0.014  CN  9R1 10 
9R1 ON1 ON1 O 0 1 N N N N N N -15.904 18.876 12.773 -4.594 0.966  0.705  ON1 9R1 11 
9R1 ON2 ON2 O 0 1 N N N N N N -17.184 20.129 13.997 -5.784 -0.558 -0.366 ON2 9R1 12 
9R1 OXT O1  O 0 1 N Y N Y N Y -19.855 16.290 7.365  4.532  -1.317 0.792  O1  9R1 13 
9R1 H   H1  H 0 1 N N N Y Y N -23.114 17.897 8.539  3.581  2.349  0.198  H1  9R1 14 
9R1 H2  H2  H 0 1 N Y N Y Y N -22.742 17.411 7.025  2.945  1.732  -1.210 H2  9R1 15 
9R1 HA  H4  H 0 1 N N N Y N N -21.368 19.204 7.658  2.740  0.518  1.469  H4  9R1 16 
9R1 H5  H5  H 0 1 N N N N N N -21.566 18.722 10.078 1.718  -0.367 -1.266 H5  9R1 17 
9R1 H6  H6  H 0 1 N N N N N N -20.463 17.321 9.858  1.708  -1.385 0.194  H6  9R1 18 
9R1 H7  H7  H 0 1 N N N N N N -18.732 18.838 8.957  0.297  0.292  1.353  H7  9R1 19 
9R1 H8  H8  H 0 1 N N N N N N -19.834 20.234 9.210  0.307  1.310  -0.107 H8  9R1 20 
9R1 H9  H9  H 0 1 N N N N N N -18.145 20.116 10.963 -0.773 -0.518 -1.388 H9  9R1 21 
9R1 H10 H10 H 0 1 N N N N N N -19.786 19.828 11.634 -0.783 -1.536 0.071  H10 9R1 22 
9R1 H11 H11 H 0 1 N N N N N N -19.325 17.337 11.425 -2.194 0.141  1.231  H11 9R1 23 
9R1 H12 H12 H 0 1 N N N N N N -17.626 17.758 11.021 -2.184 1.159  -0.229 H12 9R1 24 
9R1 H13 H13 H 0 1 N N N N N N -19.097 18.669 13.517 -3.264 -0.668 -1.511 H13 9R1 25 
9R1 H14 H14 H 0 1 N N N N N N -18.011 17.241 13.433 -3.274 -1.686 -0.051 H14 9R1 26 
9R1 H15 H15 H 0 1 N N N N N N -16.361 20.596 14.078 -6.587 -0.113 -0.062 H15 9R1 27 
9R1 HXT H16 H 0 1 N Y N Y N Y -19.131 16.013 6.816  5.366  -1.737 0.541  H16 9R1 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9R1 O   C   DOUB N N 1  
9R1 C   CA  SING N N 2  
9R1 N   CA  SING N N 3  
9R1 CA  CB  SING N N 4  
9R1 CB  CG  SING N N 5  
9R1 CG  CD  SING N N 6  
9R1 CD  CE  SING N N 7  
9R1 CE  CZ  SING N N 8  
9R1 ON1 CN  DOUB N N 9  
9R1 CZ  CN  SING N N 10 
9R1 CN  ON2 SING N N 11 
9R1 C   OXT SING N N 12 
9R1 N   H   SING N N 13 
9R1 N   H2  SING N N 14 
9R1 CA  HA  SING N N 15 
9R1 CB  H5  SING N N 16 
9R1 CB  H6  SING N N 17 
9R1 CG  H7  SING N N 18 
9R1 CG  H8  SING N N 19 
9R1 CD  H9  SING N N 20 
9R1 CD  H10 SING N N 21 
9R1 CE  H11 SING N N 22 
9R1 CE  H12 SING N N 23 
9R1 CZ  H13 SING N N 24 
9R1 CZ  H14 SING N N 25 
9R1 ON2 H15 SING N N 26 
9R1 OXT HXT SING N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9R1 SMILES           ACDLabs              12.01 "NC(CCCCCC(O)=O)C(O)=O"                                                                     
9R1 InChI            InChI                1.03  "InChI=1S/C8H15NO4/c9-6(8(12)13)4-2-1-3-5-7(10)11/h6H,1-5,9H2,(H,10,11)(H,12,13)/t6-/m0/s1" 
9R1 InChIKey         InChI                1.03  YOFPFYYTUIARDI-LURJTMIESA-N                                                                 
9R1 SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCCCCC(O)=O)C(O)=O"                                                                
9R1 SMILES           CACTVS               3.385 "N[CH](CCCCCC(O)=O)C(O)=O"                                                                  
9R1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C(CC[C@@H](C(=O)O)N)CCC(=O)O"                                                              
9R1 SMILES           "OpenEye OEToolkits" 2.0.6 "C(CCC(C(=O)O)N)CCC(=O)O"                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9R1 "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-aminooctanedioic acid"     
9R1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-azanyloctanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9R1 "Create component" 2017-06-01 RCSB 
9R1 "Initial release"  2017-11-15 RCSB 
9R1 "Modify backbone"  2023-11-03 PDBE 
9R1 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            9R1 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
