data_9C1
# 
_chem_comp.id                                    9C1 
_chem_comp.name                                  "2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-beta-D-glucopyranose" 
_chem_comp.type                                  "D-saccharide, beta linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C10 H16 Cl N O6" 
_chem_comp.mon_nstd_parent_comp_id               GCS 
_chem_comp.pdbx_synonyms                         
;2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-beta-D-glucose; 2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-D-glucose;
2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-glucose
;
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-04-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        281.690 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9C1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5VIE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 9C1 "2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-beta-D-glucose" PDB ? 
2 9C1 "2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-D-glucose"      PDB ? 
3 9C1 "2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-glucose"        PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9C1 C10  C10  C  0 1 N N N N N N -43.213 29.334 -24.315 -2.932 0.726  -0.226 C10  9C1 1  
9C1 C11  C11  C  0 1 N N N N N N -42.308 30.205 -23.768 -4.032 0.339  0.414  C11  9C1 2  
9C1 C12  C12  C  0 1 N N N N N N -40.831 30.087 -23.731 -5.388 0.710  -0.127 C12  9C1 3  
9C1 C3   C15  C  0 1 N N R N N N -48.048 28.461 -24.692 1.866  1.408  -0.308 C3   9C1 4  
9C1 C4   C17  C  0 1 N N S N N N -49.417 29.046 -24.422 3.251  0.978  0.184  C4   9C1 5  
9C1 O14  O14  O  0 1 N N N N N N -45.027 30.556 -23.388 -1.518 -0.289 1.324  O14  9C1 6  
9C1 O6   O01  O  0 1 N N N N N N -51.996 29.561 -24.741 5.226  -2.174 -0.337 O6   9C1 7  
9C1 C6   C02  C  0 1 N N N N N N -51.228 30.415 -25.534 4.900  -0.900 0.221  C6   9C1 8  
9C1 C5   C03  C  0 1 N N R N N N -49.873 29.695 -25.775 3.543  -0.440 -0.315 C5   9C1 9  
9C1 O5   O04  O  0 1 N N N N N N -48.914 30.757 -26.096 2.522  -1.326 0.147  O5   9C1 10 
9C1 C1   C05  C  0 1 N N R N N N -47.507 30.396 -26.170 1.211  -1.000 -0.319 C1   9C1 11 
9C1 C2   C07  C  0 1 N N R N N N -47.047 29.611 -24.884 0.826  0.395  0.179  C2   9C1 12 
9C1 N2   N08  N  0 1 N N N N N N -45.690 29.166 -25.062 -0.493 0.756  -0.347 N2   9C1 13 
9C1 C09  C09  C  0 1 N N N N N N -44.675 29.695 -24.250 -1.608 0.364  0.302  C09  9C1 14 
9C1 CL13 CL13 CL 0 0 N N N N N N -40.097 31.880 -23.816 -6.376 -0.782 -0.346 CL13 9C1 15 
9C1 O3   O16  O  0 1 N N N N N N -47.652 27.955 -23.439 1.554  2.702  0.214  O3   9C1 16 
9C1 O4   O18  O  0 1 N N N N N N -50.260 27.949 -24.217 4.239  1.877  -0.326 O4   9C1 17 
9C1 H1A  H1   H  0 1 N N N N N N -42.888 28.415 -24.780 -3.011 1.302  -1.136 H1A  9C1 18 
9C1 H2A  H2   H  0 1 N N N N N N -42.723 31.089 -23.306 -3.952 -0.240 1.322  H2A  9C1 19 
9C1 H3A  H3   H  0 1 N N N N N N -40.517 29.597 -22.797 -5.889 1.378  0.575  H3A  9C1 20 
9C1 H4A  H4   H  0 1 N N N N N N -40.480 29.497 -24.591 -5.272 1.213  -1.087 H4A  9C1 21 
9C1 H3   H5   H  0 1 N N N N N N -48.036 27.735 -25.519 1.859  1.442  -1.397 H3   9C1 22 
9C1 H4   H6   H  0 1 N N N N N N -49.410 29.777 -23.600 3.272  0.992  1.273  H4   9C1 23 
9C1 HO6  H7   H  0 1 N Y N N N N -52.839 29.963 -24.567 6.075  -2.528 -0.040 HO6  9C1 24 
9C1 H61  H8   H  0 1 N N N N N N -51.735 30.602 -26.492 4.853  -0.980 1.307  H61  9C1 25 
9C1 H62  H9   H  0 1 N N N N N N -51.063 31.370 -25.014 5.666  -0.175 -0.056 H62  9C1 26 
9C1 H5   H10  H  0 1 N N N N N N -49.955 28.940 -26.571 3.563  -0.444 -1.405 H5   9C1 27 
9C1 H1   H11  H  0 1 N N N N N N -47.293 29.796 -27.067 1.200  -1.013 -1.409 H1   9C1 28 
9C1 H2   H13  H  0 1 N N N N N N -47.114 30.289 -24.021 0.797  0.397  1.269  H2   9C1 29 
9C1 HN21 H14  H  0 0 N N N N N N -45.472 28.484 -25.760 -0.564 1.276  -1.162 HN21 9C1 30 
9C1 HO3  H15  H  0 1 N Y N N N N -46.790 27.563 -23.514 2.177  3.393  -0.049 HO3  9C1 31 
9C1 HO4  H16  H  0 1 N Y N N N N -51.142 28.255 -24.041 5.142  1.663  -0.054 HO4  9C1 32 
9C1 O1   O1   O  0 1 N Y N N N N -47.170 31.691 -26.304 0.276  -1.959 0.178  O1   9C1 33 
9C1 HO1  H12  H  0 1 N Y N N N N -46.226 31.767 -26.380 0.460  -2.868 -0.098 HO1  9C1 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9C1 C10 C11  DOUB N E 1  
9C1 C10 C09  SING N N 2  
9C1 C11 C12  SING N N 3  
9C1 C3  C4   SING N N 4  
9C1 C3  C2   SING N N 5  
9C1 C3  O3   SING N N 6  
9C1 C4  C5   SING N N 7  
9C1 C4  O4   SING N N 8  
9C1 O14 C09  DOUB N N 9  
9C1 O6  C6   SING N N 10 
9C1 C6  C5   SING N N 11 
9C1 C5  O5   SING N N 12 
9C1 O5  C1   SING N N 13 
9C1 C1  C2   SING N N 14 
9C1 C2  N2   SING N N 15 
9C1 N2  C09  SING N N 16 
9C1 C12 CL13 SING N N 17 
9C1 C10 H1A  SING N N 18 
9C1 C11 H2A  SING N N 19 
9C1 C12 H3A  SING N N 20 
9C1 C12 H4A  SING N N 21 
9C1 C3  H3   SING N N 22 
9C1 C4  H4   SING N N 23 
9C1 O6  HO6  SING N N 24 
9C1 C6  H61  SING N N 25 
9C1 C6  H62  SING N N 26 
9C1 C5  H5   SING N N 27 
9C1 C1  H1   SING N N 28 
9C1 C2  H2   SING N N 29 
9C1 N2  HN21 SING N N 30 
9C1 O3  HO3  SING N N 31 
9C1 O4  HO4  SING N N 32 
9C1 C1  O1   SING N N 33 
9C1 O1  HO1  SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9C1 SMILES           ACDLabs              12.01 "C(=C/CCl)\C(=O)NC1C(C(C(CO)OC1O)O)O"                                                                                                     
9C1 InChI            InChI                1.03  "InChI=1S/C10H16ClNO6/c11-3-1-2-6(14)12-7-9(16)8(15)5(4-13)18-10(7)17/h1-2,5,7-10,13,15-17H,3-4H2,(H,12,14)/b2-1+/t5-,7-,8-,9-,10-/m1/s1" 
9C1 InChIKey         InChI                1.03  LKECTNVLFDGIBK-KKRTVAFTSA-N                                                                                                               
9C1 SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@@H](O)[C@H](NC(=O)\C=C\CCl)[C@@H](O)[C@@H]1O"                                                                                
9C1 SMILES           CACTVS               3.385 "OC[CH]1O[CH](O)[CH](NC(=O)C=CCCl)[CH](O)[CH]1O"                                                                                          
9C1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C(/C=C/C(=O)N[C@@H]1[C@H]([C@@H]([C@H](OC1O)CO)O)O)Cl"                                                                                   
9C1 SMILES           "OpenEye OEToolkits" 2.0.6 "C(C=CC(=O)NC1C(C(C(OC1O)CO)O)O)Cl"                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9C1 "SYSTEMATIC NAME" ACDLabs              12.01 "2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-beta-D-glucopyranose"                                                 
9C1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(~{E})-4-chloranyl-~{N}-[(3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]but-2-enamide" 
# 
_pdbx_chem_comp_related.comp_id             9C1 
_pdbx_chem_comp_related.related_comp_id     GCS 
_pdbx_chem_comp_related.relationship_type   "Carbohydrate core" 
_pdbx_chem_comp_related.details             ? 
# 
loop_
_pdbx_chem_comp_atom_related.ordinal 
_pdbx_chem_comp_atom_related.comp_id 
_pdbx_chem_comp_atom_related.atom_id 
_pdbx_chem_comp_atom_related.related_comp_id 
_pdbx_chem_comp_atom_related.related_atom_id 
_pdbx_chem_comp_atom_related.related_type 
1  9C1 C6   GCS C6   "Carbohydrate core" 
2  9C1 C5   GCS C5   "Carbohydrate core" 
3  9C1 C1   GCS C1   "Carbohydrate core" 
4  9C1 C2   GCS C2   "Carbohydrate core" 
5  9C1 C3   GCS C3   "Carbohydrate core" 
6  9C1 C4   GCS C4   "Carbohydrate core" 
7  9C1 N2   GCS N2   "Carbohydrate core" 
8  9C1 O6   GCS O6   "Carbohydrate core" 
9  9C1 O5   GCS O5   "Carbohydrate core" 
10 9C1 O1   GCS O1   "Carbohydrate core" 
11 9C1 O3   GCS O3   "Carbohydrate core" 
12 9C1 O4   GCS O4   "Carbohydrate core" 
13 9C1 H5   GCS H5   "Carbohydrate core" 
14 9C1 H1   GCS H1   "Carbohydrate core" 
15 9C1 HO1  GCS HO1  "Carbohydrate core" 
16 9C1 H2   GCS H2   "Carbohydrate core" 
17 9C1 HN21 GCS HN21 "Carbohydrate core" 
18 9C1 HO3  GCS HO3  "Carbohydrate core" 
19 9C1 HO4  GCS HO4  "Carbohydrate core" 
20 9C1 H3   GCS H3   "Carbohydrate core" 
21 9C1 H4   GCS H4   "Carbohydrate core" 
22 9C1 HO6  GCS HO6  "Carbohydrate core" 
23 9C1 H61  GCS H61  "Carbohydrate core" 
24 9C1 H62  GCS H62  "Carbohydrate core" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
9C1 "CARBOHYDRATE ISOMER"                 D        PDB ? 
9C1 "CARBOHYDRATE RING"                   pyranose PDB ? 
9C1 "CARBOHYDRATE ANOMER"                 beta     PDB ? 
9C1 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9C1 "Create component"         2017-04-18 RCSB 
9C1 "Initial release"          2017-10-18 RCSB 
9C1 "Other modification"       2020-07-03 RCSB 
9C1 "Modify parent residue"    2020-07-17 RCSB 
9C1 "Modify synonyms"          2020-07-17 RCSB 
9C1 "Modify internal type"     2020-07-17 RCSB 
9C1 "Modify linking type"      2020-07-17 RCSB 
9C1 "Modify atom id"           2020-07-17 RCSB 
9C1 "Modify component atom id" 2020-07-17 RCSB 
9C1 "Modify leaving atom flag" 2020-07-17 RCSB 
9C1 "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            9C1 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Carbohydrate 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
