data_9B1
# 
_chem_comp.id                                    9B1 
_chem_comp.name                                  "2-[2-(hydroxymethyl)-3-{1-methyl-6-oxo-5-[(pyrimidin-4-yl)amino]-1,6-dihydropyridin-3-yl}phenyl]-6,6-dimethyl-3,4,6,7-tetrahydro-2H-cyclopenta[4,5]thieno[2,3-c]pyridin-1(5H)-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H29 N5 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-04-14 
_chem_comp.pdbx_modified_date                    2017-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        527.637 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9B1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5VGO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9B1 C4  C1  C 0 1 Y N N -41.490 26.589 -2.472  5.589  0.941  -0.349 C4  9B1 1  
9B1 C14 C2  C 0 1 N N N -40.916 25.619 -4.824  3.280  0.917  -1.535 C14 9B1 2  
9B1 C5  C3  C 0 1 Y N N -41.265 26.723 -3.846  4.360  0.354  -0.627 C5  9B1 3  
9B1 C6  C4  C 0 1 Y N N -41.397 28.020 -4.283  4.177  -0.849 0.016  C6  9B1 4  
9B1 C8  C5  C 0 1 Y N N -41.759 27.737 -1.838  6.360  0.236  0.496  C8  9B1 5  
9B1 C9  C6  C 0 1 N N N -41.999 27.552 -0.349  7.677  0.961  0.745  C9  9B1 6  
9B1 C10 C7  C 0 1 N N N -41.095 28.426 -5.641  2.949  -1.639 -0.163 C10 9B1 7  
9B1 C13 C8  C 0 1 N N N -41.204 26.052 -6.263  2.495  -0.246 -2.139 C13 9B1 8  
9B1 C3  C9  C 0 1 N N N -41.509 25.437 -1.468  6.313  2.223  -0.761 C3  9B1 9  
9B1 C1  C10 C 0 1 N N N -43.411 25.556 0.161   8.678  3.018  -0.338 C1  9B1 10 
9B1 C2  C11 C 0 1 N N N -41.994 26.031 -0.129  7.422  2.412  0.292  C2  9B1 11 
9B1 S7  S1  S 0 1 Y N N -41.738 29.049 -2.936  5.581  -1.212 0.987  S7  9B1 12 
9B1 O11 O1  O 0 1 N N N -40.861 29.620 -5.850  2.702  -2.604 0.536  O11 9B1 13 
9B1 N12 N1  N 0 1 N N N -40.939 27.464 -6.562  2.109  -1.238 -1.144 N12 9B1 14 
9B1 C15 C12 C 0 1 Y N N -40.531 27.826 -7.855  0.827  -1.794 -1.205 C15 9B1 15 
9B1 C16 C13 C 0 1 Y N N -41.449 28.154 -8.839  0.603  -2.947 -1.948 C16 9B1 16 
9B1 C17 C14 C 0 1 Y N N -41.012 28.509 -10.103 -0.662 -3.499 -2.010 C17 9B1 17 
9B1 C18 C15 C 0 1 Y N N -39.652 28.541 -10.385 -1.711 -2.909 -1.335 C18 9B1 18 
9B1 C19 C16 C 0 1 Y N N -38.706 28.203 -9.412  -1.497 -1.752 -0.586 C19 9B1 19 
9B1 C20 C17 C 0 1 Y N N -39.150 27.861 -8.121  -0.221 -1.198 -0.519 C20 9B1 20 
9B1 C21 C18 C 0 1 N N N -38.144 27.455 -7.050  0.018  0.052  0.288  C21 9B1 21 
9B1 O22 O2  O 0 1 N N N -37.802 28.446 -6.087  0.362  -0.305 1.629  O22 9B1 22 
9B1 C23 C19 C 0 1 N N N -37.268 28.304 -9.813  -2.623 -1.116 0.140  C23 9B1 23 
9B1 C24 C20 C 0 1 N N N -36.806 27.788 -11.043 -3.210 0.067  -0.359 C24 9B1 24 
9B1 C25 C21 C 0 1 N N N -35.482 27.945 -11.391 -4.246 0.636  0.326  C25 9B1 25 
9B1 C26 C22 C 0 1 N N N -34.592 28.605 -10.528 -4.706 0.027  1.516  C26 9B1 26 
9B1 O27 O3  O 0 1 N N N -33.408 28.721 -10.865 -5.631 0.526  2.136  O27 9B1 27 
9B1 N28 N2  N 0 1 N N N -35.050 29.078 -9.358  -4.126 -1.101 1.967  N28 9B1 28 
9B1 C29 C23 C 0 1 N N N -36.362 28.947 -9.005  -3.099 -1.676 1.289  C29 9B1 29 
9B1 C30 C24 C 0 1 N N N -34.084 29.759 -8.478  -4.613 -1.720 3.202  C30 9B1 30 
9B1 N31 N3  N 0 1 N N N -34.893 27.481 -12.573 -4.846 1.810  -0.145 N31 9B1 31 
9B1 C32 C25 C 0 1 Y N N -35.542 27.026 -13.702 -6.195 1.820  -0.462 C32 9B1 32 
9B1 C33 C26 C 0 1 Y N N -34.779 26.794 -14.855 -6.938 0.637  -0.438 C33 9B1 33 
9B1 C34 C27 C 0 1 Y N N -35.417 26.318 -15.983 -8.280 0.699  -0.762 C34 9B1 34 
9B1 N35 N4  N 0 1 Y N N -36.733 26.108 -15.934 -8.814 1.869  -1.081 N35 9B1 35 
9B1 C36 C28 C 0 1 Y N N -37.421 26.335 -14.833 -8.086 2.968  -1.095 C36 9B1 36 
9B1 N37 N5  N 0 1 Y N N -36.846 26.778 -13.731 -6.805 2.956  -0.789 N37 9B1 37 
9B1 C38 C29 C 0 1 N N N -41.041 25.649 1.012   6.929  3.271  1.459  C38 9B1 38 
9B1 H1  H1  H 0 1 N N N -41.516 24.727 -4.589  2.607  1.549  -0.955 H1  9B1 39 
9B1 H2  H2  H 0 1 N N N -39.847 25.377 -4.728  3.739  1.504  -2.330 H2  9B1 40 
9B1 H3  H3  H 0 1 N N N -41.197 28.029 0.234   7.931  0.933  1.804  H3  9B1 41 
9B1 H4  H4  H 0 1 N N N -42.969 27.981 -0.058  8.474  0.513  0.152  H4  9B1 42 
9B1 H5  H5  H 0 1 N N N -42.266 25.855 -6.470  1.596  0.145  -2.615 H5  9B1 43 
9B1 H6  H6  H 0 1 N N N -40.581 25.441 -6.932  3.111  -0.731 -2.897 H6  9B1 44 
9B1 H7  H7  H 0 1 N N N -42.198 24.649 -1.806  6.749  2.110  -1.753 H7  9B1 45 
9B1 H8  H8  H 0 1 N N N -40.499 25.016 -1.353  5.626  3.069  -0.743 H8  9B1 46 
9B1 H9  H9  H 0 1 N N N -43.753 25.982 1.116   8.985  2.412  -1.191 H9  9B1 47 
9B1 H10 H10 H 0 1 N N N -44.081 25.885 -0.647  8.464  4.033  -0.672 H10 9B1 48 
9B1 H11 H11 H 0 1 N N N -43.424 24.458 0.224   9.480  3.040  0.399  H11 9B1 49 
9B1 H12 H12 H 0 1 N N N -42.506 28.133 -8.620  1.421  -3.412 -2.479 H12 9B1 50 
9B1 H13 H13 H 0 1 N N N -41.728 28.761 -10.871 -0.831 -4.394 -2.590 H13 9B1 51 
9B1 H14 H14 H 0 1 N N N -39.320 28.831 -11.371 -2.699 -3.343 -1.386 H14 9B1 52 
9B1 H15 H15 H 0 1 N N N -38.563 26.594 -6.508  0.834  0.621  -0.157 H15 9B1 53 
9B1 H16 H16 H 0 1 N N N -37.218 27.152 -7.560  -0.887 0.659  0.295  H16 9B1 54 
9B1 H17 H17 H 0 1 N N N -37.173 28.087 -5.473  0.530  0.452  2.206  H17 9B1 55 
9B1 H18 H18 H 0 1 N N N -37.485 27.274 -11.707 -2.844 0.517  -1.270 H18 9B1 56 
9B1 H19 H19 H 0 1 N N N -36.697 29.360 -8.065  -2.652 -2.584 1.666  H19 9B1 57 
9B1 H20 H20 H 0 1 N N N -34.593 30.092 -7.562  -5.437 -1.129 3.604  H20 9B1 58 
9B1 H21 H21 H 0 1 N N N -33.274 29.063 -8.215  -4.961 -2.731 2.989  H21 9B1 59 
9B1 H22 H22 H 0 1 N N N -33.663 30.631 -9.001  -3.805 -1.760 3.931  H22 9B1 60 
9B1 H23 H23 H 0 1 N N N -33.893 27.479 -12.602 -4.318 2.617  -0.250 H23 9B1 61 
9B1 H24 H24 H 0 1 N N N -33.716 26.983 -14.861 -6.475 -0.302 -0.174 H24 9B1 62 
9B1 H25 H25 H 0 1 N N N -34.861 26.120 -16.887 -8.885 -0.195 -0.754 H25 9B1 63 
9B1 H26 H26 H 0 1 N N N -38.486 26.153 -14.833 -8.554 3.904  -1.360 H26 9B1 64 
9B1 H27 H27 H 0 1 N N N -41.405 26.082 1.955   7.692  3.299  2.237  H27 9B1 65 
9B1 H28 H28 H 0 1 N N N -40.999 24.554 1.104   6.732  4.284  1.106  H28 9B1 66 
9B1 H29 H29 H 0 1 N N N -40.035 26.037 0.795   6.012  2.842  1.863  H29 9B1 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9B1 C34 N35 DOUB Y N 1  
9B1 C34 C33 SING Y N 2  
9B1 N35 C36 SING Y N 3  
9B1 C33 C32 DOUB Y N 4  
9B1 C36 N37 DOUB Y N 5  
9B1 N37 C32 SING Y N 6  
9B1 C32 N31 SING N N 7  
9B1 N31 C25 SING N N 8  
9B1 C25 C24 DOUB N N 9  
9B1 C25 C26 SING N N 10 
9B1 C24 C23 SING N N 11 
9B1 O27 C26 DOUB N N 12 
9B1 C26 N28 SING N N 13 
9B1 C18 C17 DOUB Y N 14 
9B1 C18 C19 SING Y N 15 
9B1 C17 C16 SING Y N 16 
9B1 C23 C19 SING N N 17 
9B1 C23 C29 DOUB N N 18 
9B1 C19 C20 DOUB Y N 19 
9B1 N28 C29 SING N N 20 
9B1 N28 C30 SING N N 21 
9B1 C16 C15 DOUB Y N 22 
9B1 C20 C15 SING Y N 23 
9B1 C20 C21 SING N N 24 
9B1 C15 N12 SING N N 25 
9B1 C21 O22 SING N N 26 
9B1 N12 C13 SING N N 27 
9B1 N12 C10 SING N N 28 
9B1 C13 C14 SING N N 29 
9B1 O11 C10 DOUB N N 30 
9B1 C10 C6  SING N N 31 
9B1 C14 C5  SING N N 32 
9B1 C6  C5  DOUB Y N 33 
9B1 C6  S7  SING Y N 34 
9B1 C5  C4  SING Y N 35 
9B1 S7  C8  SING Y N 36 
9B1 C4  C8  DOUB Y N 37 
9B1 C4  C3  SING N N 38 
9B1 C8  C9  SING N N 39 
9B1 C3  C2  SING N N 40 
9B1 C9  C2  SING N N 41 
9B1 C2  C1  SING N N 42 
9B1 C2  C38 SING N N 43 
9B1 C14 H1  SING N N 44 
9B1 C14 H2  SING N N 45 
9B1 C9  H3  SING N N 46 
9B1 C9  H4  SING N N 47 
9B1 C13 H5  SING N N 48 
9B1 C13 H6  SING N N 49 
9B1 C3  H7  SING N N 50 
9B1 C3  H8  SING N N 51 
9B1 C1  H9  SING N N 52 
9B1 C1  H10 SING N N 53 
9B1 C1  H11 SING N N 54 
9B1 C16 H12 SING N N 55 
9B1 C17 H13 SING N N 56 
9B1 C18 H14 SING N N 57 
9B1 C21 H15 SING N N 58 
9B1 C21 H16 SING N N 59 
9B1 O22 H17 SING N N 60 
9B1 C24 H18 SING N N 61 
9B1 C29 H19 SING N N 62 
9B1 C30 H20 SING N N 63 
9B1 C30 H21 SING N N 64 
9B1 C30 H22 SING N N 65 
9B1 N31 H23 SING N N 66 
9B1 C33 H24 SING N N 67 
9B1 C34 H25 SING N N 68 
9B1 C36 H26 SING N N 69 
9B1 C38 H27 SING N N 70 
9B1 C38 H28 SING N N 71 
9B1 C38 H29 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9B1 SMILES           ACDLabs              12.01 "c12c(CC(C1)(C)C)sc3c2CCN(C3=O)c4cccc(c4CO)C5=CN(C(C(=C5)Nc6ccncn6)=O)C"                                                                                                                                  
9B1 InChI            InChI                1.03  "InChI=1S/C29H29N5O3S/c1-29(2)12-20-19-8-10-34(28(37)26(19)38-24(20)13-29)23-6-4-5-18(21(23)15-35)17-11-22(27(36)33(3)14-17)32-25-7-9-30-16-31-25/h4-7,9,11,14,16,35H,8,10,12-13,15H2,1-3H3,(H,30,31,32)" 
9B1 InChIKey         InChI                1.03  QAESSIFTPVEYRY-UHFFFAOYSA-N                                                                                                                                                                               
9B1 SMILES_CANONICAL CACTVS               3.385 "CN1C=C(C=C(Nc2ccncn2)C1=O)c3cccc(N4CCc5c6CC(C)(C)Cc6sc5C4=O)c3CO"                                                                                                                                        
9B1 SMILES           CACTVS               3.385 "CN1C=C(C=C(Nc2ccncn2)C1=O)c3cccc(N4CCc5c6CC(C)(C)Cc6sc5C4=O)c3CO"                                                                                                                                        
9B1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC1(Cc2c3c(sc2C1)C(=O)N(CC3)c4cccc(c4CO)C5=CN(C(=O)C(=C5)Nc6ccncn6)C)C"                                                                                                                                  
9B1 SMILES           "OpenEye OEToolkits" 2.0.6 "CC1(Cc2c3c(sc2C1)C(=O)N(CC3)c4cccc(c4CO)C5=CN(C(=O)C(=C5)Nc6ccncn6)C)C"                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9B1 "SYSTEMATIC NAME" ACDLabs              12.01 "2-[2-(hydroxymethyl)-3-{1-methyl-6-oxo-5-[(pyrimidin-4-yl)amino]-1,6-dihydropyridin-3-yl}phenyl]-6,6-dimethyl-3,4,6,7-tetrahydro-2H-cyclopenta[4,5]thieno[2,3-c]pyridin-1(5H)-one" 
9B1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "10-[2-(hydroxymethyl)-3-[1-methyl-6-oxidanylidene-5-(pyrimidin-4-ylamino)pyridin-3-yl]phenyl]-4,4-dimethyl-7-thia-10-azatricyclo[6.4.0.0^{2,6}]dodeca-1(8),2(6)-dien-9-one"        
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9B1 "Create component" 2017-04-14 RCSB 
9B1 "Initial release"  2017-07-05 RCSB 
# 
