data_7L1
# 
_chem_comp.id                                    7L1 
_chem_comp.name                                  
"S-{(3S,5R,9R)-1-[(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} ethanethioate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H38 N7 O17 P3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-11-07 
_chem_comp.pdbx_modified_date                    2018-07-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        809.571 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7L1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5TS7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7L1 C15 C1  C 0 1 N N N 6.576  71.352 17.768 -4.078 4.172  2.099  C15 7L1 1  
7L1 C17 C2  C 0 1 N N N 5.915  72.602 18.310 -3.432 5.231  2.995  C17 7L1 2  
7L1 C20 C3  C 0 1 N N N 7.777  72.264 15.640 -6.234 3.349  1.193  C20 7L1 3  
7L1 C24 C4  C 0 1 N N N 9.305  75.099 15.452 -6.548 -0.345 0.899  C24 7L1 4  
7L1 C28 C5  C 0 1 N N N 8.274  75.618 19.185 -7.566 -3.553 -0.926 C28 7L1 5  
7L1 C01 C6  C 0 1 N N R -0.485 67.670 20.635 6.005  1.485  -0.758 C01 7L1 6  
7L1 O02 O1  O 0 1 N N N -1.592 68.119 21.296 7.083  2.158  -0.104 O02 7L1 7  
7L1 C03 C7  C 0 1 N N R 0.744  68.463 21.076 4.655  1.917  -0.154 C03 7L1 8  
7L1 C04 C8  C 0 1 N N N 2.055  67.583 20.879 3.783  2.558  -1.236 C04 7L1 9  
7L1 O05 O2  O 0 1 N N N 2.145  67.135 19.527 2.582  3.060  -0.645 O05 7L1 10 
7L1 P06 P1  P 0 1 N N N 3.502  66.475 19.059 1.431  3.800  -1.492 P06 7L1 11 
7L1 O07 O3  O 0 1 N N N 4.131  65.761 20.221 2.006  5.180  -2.088 O07 7L1 12 
7L1 O08 O4  O 0 1 N N N 3.233  65.477 17.957 0.997  2.925  -2.605 O08 7L1 13 
7L1 O09 O5  O 0 1 N N N 4.447  67.675 18.584 0.175  4.111  -0.534 O09 7L1 14 
7L1 P10 P2  P 0 1 N N N 5.341  67.760 17.257 -1.380 4.433  -0.797 P10 7L1 15 
7L1 O11 O6  O 0 1 N N N 6.207  66.546 17.126 -1.533 5.942  -1.335 O11 7L1 16 
7L1 O12 O7  O 0 1 N N N 4.469  67.865 16.035 -1.914 3.492  -1.807 O12 7L1 17 
7L1 O13 O8  O 0 1 N N N 6.200  69.049 17.389 -2.202 4.268  0.578  O13 7L1 18 
7L1 C14 C9  C 0 1 N N N 5.722  70.126 18.134 -3.625 4.383  0.653  C14 7L1 19 
7L1 C16 C10 C 0 1 N N N 7.938  71.191 18.407 -3.654 2.779  2.568  C16 7L1 20 
7L1 C18 C11 C 0 1 N N R 6.637  71.427 16.218 -5.601 4.296  2.179  C18 7L1 21 
7L1 O19 O9  O 0 1 N N N 5.442  71.930 15.743 -5.987 5.636  1.867  O19 7L1 22 
7L1 O21 O10 O 0 1 N N N 8.937  71.885 15.671 -6.782 3.782  0.201  O21 7L1 23 
7L1 N22 N1  N 0 1 N N N 7.489  73.551 14.965 -6.193 2.020  1.413  N22 7L1 24 
7L1 C23 C12 C 0 1 N N N 8.576  74.305 14.407 -6.715 1.094  0.405  C23 7L1 25 
7L1 C25 C13 C 0 1 N N N 8.543  75.592 16.716 -7.085 -1.297 -0.138 C25 7L1 26 
7L1 O26 O11 O 0 1 N N N 7.592  76.377 16.599 -7.556 -0.868 -1.170 O26 7L1 27 
7L1 N27 N2  N 0 1 N N N 8.962  75.164 18.007 -7.044 -2.626 0.082  N27 7L1 28 
7L1 C29 C14 C 0 1 N N N 8.658  77.056 19.526 -7.399 -4.991 -0.432 C29 7L1 29 
7L1 S30 S1  S 0 1 N N N 8.490  77.367 21.291 -8.045 -6.135 -1.677 S30 7L1 30 
7L1 C31 C15 C 0 1 N N N 10.161 77.257 21.973 -7.743 -7.628 -0.894 C31 7L1 31 
7L1 C32 C16 C 0 1 N N N 10.415 77.425 23.462 -8.123 -8.922 -1.566 C32 7L1 32 
7L1 O33 O12 O 0 1 N N N 11.115 77.234 21.217 -7.223 -7.643 0.202  O33 7L1 33 
7L1 O34 O13 O 0 1 N N N 0.770  69.490 20.316 4.016  0.734  0.354  O34 7L1 34 
7L1 C35 C17 C 0 1 N N R -0.448 69.323 19.254 5.064  -0.204 0.679  C35 7L1 35 
7L1 N36 N3  N 0 1 Y N N -0.109 69.847 17.965 4.539  -1.571 0.719  N36 7L1 36 
7L1 C37 C18 C 0 1 Y N N 1.081  69.791 17.384 3.423  -2.025 0.082  C37 7L1 37 
7L1 N38 N4  N 0 1 Y N N 1.031  70.375 16.180 3.250  -3.290 0.335  N38 7L1 38 
7L1 C39 C19 C 0 1 Y N N -0.248 70.819 15.975 4.242  -3.727 1.148  C39 7L1 39 
7L1 C40 C20 C 0 1 Y N N -0.982 70.485 17.117 5.084  -2.631 1.400  C40 7L1 40 
7L1 N41 N5  N 0 1 Y N N -2.310 70.812 17.197 6.146  -2.798 2.181  N41 7L1 41 
7L1 C42 C21 C 0 1 Y N N -2.909 71.459 16.170 6.410  -3.973 2.713  C42 7L1 42 
7L1 N43 N6  N 0 1 Y N N -2.274 71.799 15.078 5.648  -5.032 2.505  N43 7L1 43 
7L1 C44 C22 C 0 1 Y N N -0.945 71.508 14.921 4.567  -4.962 1.736  C44 7L1 44 
7L1 N45 N7  N 0 1 N N N -0.266 71.877 13.732 3.775  -6.076 1.524  N45 7L1 45 
7L1 C46 C23 C 0 1 N N R -0.569 68.070 19.169 6.073  -0.037 -0.486 C46 7L1 46 
7L1 O47 O14 O 0 1 N N N -1.859 67.606 18.545 7.388  -0.425 -0.082 O47 7L1 47 
7L1 P48 P3  P 0 1 N N N -2.020 66.001 18.373 8.210  -1.611 -0.796 P48 7L1 48 
7L1 O49 O15 O 0 1 N N N -2.237 65.383 19.745 9.693  -1.686 -0.174 O49 7L1 49 
7L1 O50 O16 O 0 1 N N N -0.741 65.429 17.764 7.454  -3.012 -0.550 O50 7L1 50 
7L1 O51 O17 O 0 1 N N N -3.207 65.700 17.495 8.297  -1.346 -2.249 O51 7L1 51 
7L1 H1  H1  H 0 1 N N N 5.872  72.548 19.408 -3.635 6.222  2.590  H1  7L1 52 
7L1 H2  H2  H 0 1 N N N 6.498  73.485 18.009 -3.846 5.157  4.001  H2  7L1 53 
7L1 H3  H3  H 0 1 N N N 4.895  72.681 17.907 -2.355 5.067  3.033  H3  7L1 54 
7L1 H4  H4  H 0 1 N N N 10.138 74.473 15.805 -5.491 -0.550 1.068  H4  7L1 55 
7L1 H5  H5  H 0 1 N N N 9.705  75.993 14.952 -7.097 -0.475 1.831  H5  7L1 56 
7L1 H6  H6  H 0 1 N N N 7.189  75.568 19.009 -8.623 -3.347 -1.095 H6  7L1 57 
7L1 H7  H7  H 0 1 N N N 8.539  74.965 20.030 -7.017 -3.423 -1.858 H7  7L1 58 
7L1 H8  H8  H 0 1 N N N -0.316 66.588 20.741 6.026  1.685  -1.829 H8  7L1 59 
7L1 H9  H9  H 0 1 N N N -1.538 67.869 22.211 7.057  3.121  -0.193 H9  7L1 60 
7L1 H10 H10 H 0 1 N N N 0.650  68.715 22.143 4.821  2.626  0.656  H10 7L1 61 
7L1 H11 H11 H 0 1 N N N 2.013  66.712 21.549 4.328  3.378  -1.703 H11 7L1 62 
7L1 H12 H12 H 0 1 N N N 2.940  68.189 21.121 3.533  1.812  -1.990 H12 7L1 63 
7L1 H13 H13 H 0 1 N N N 4.224  64.839 20.014 2.310  5.804  -1.414 H13 7L1 64 
7L1 H14 H14 H 0 1 N N N 6.018  66.109 16.304 -1.202 6.614  -0.723 H14 7L1 65 
7L1 H15 H15 H 0 1 N N N 4.667  70.315 17.887 -4.084 3.629  0.014  H15 7L1 66 
7L1 H16 H16 H 0 1 N N N 5.814  69.910 19.209 -3.927 5.376  0.318  H16 7L1 67 
7L1 H17 H17 H 0 1 N N N 7.827  71.144 19.500 -2.566 2.722  2.601  H17 7L1 68 
7L1 H18 H18 H 0 1 N N N 8.405  70.263 18.046 -4.058 2.592  3.563  H18 7L1 69 
7L1 H19 H19 H 0 1 N N N 8.572  72.049 18.139 -4.036 2.030  1.874  H19 7L1 70 
7L1 H20 H20 H 0 1 N N N 6.768  70.398 15.851 -5.933 4.047  3.187  H20 7L1 71 
7L1 H21 H21 H 0 1 N N N 4.721  71.420 16.094 -5.723 5.926  0.983  H21 7L1 72 
7L1 H22 H22 H 0 1 N N N 6.550  73.890 14.899 -5.817 1.676  2.238  H22 7L1 73 
7L1 H23 H23 H 0 1 N N N 9.283  73.610 13.932 -6.166 1.224  -0.527 H23 7L1 74 
7L1 H24 H24 H 0 1 N N N 8.177  74.996 13.650 -7.772 1.299  0.235  H24 7L1 75 
7L1 H25 H25 H 0 1 N N N 9.741  74.543 18.095 -6.668 -2.970 0.908  H25 7L1 76 
7L1 H26 H26 H 0 1 N N N 9.702  77.230 19.228 -6.342 -5.197 -0.262 H26 7L1 77 
7L1 H27 H27 H 0 1 N N N 8.000  77.744 18.975 -7.949 -5.121 0.501  H27 7L1 78 
7L1 H28 H28 H 0 1 N N N 11.497 77.506 23.643 -7.288 -9.277 -2.169 H28 7L1 79 
7L1 H29 H29 H 0 1 N N N 9.914  78.337 23.819 -8.368 -9.666 -0.809 H29 7L1 80 
7L1 H30 H30 H 0 1 N N N 10.017 76.553 24.002 -8.990 -8.757 -2.207 H30 7L1 81 
7L1 H31 H31 H 0 1 N N N -1.335 69.829 19.663 5.530  0.055  1.630  H31 7L1 82 
7L1 H32 H32 H 0 1 N N N 1.962  69.341 17.818 2.777  -1.424 -0.540 H32 7L1 83 
7L1 H33 H33 H 0 1 N N N -3.957 71.705 16.256 7.281  -4.075 3.342  H33 7L1 84 
7L1 H34 H34 H 0 1 N N N -0.902 72.340 13.114 4.006  -6.922 1.940  H34 7L1 85 
7L1 H35 H35 H 0 1 N N N 0.488  72.494 13.957 2.988  -6.013 0.960  H35 7L1 86 
7L1 H36 H36 H 0 1 N N N 0.270  67.603 18.632 5.753  -0.603 -1.361 H36 7L1 87 
7L1 H37 H37 H 0 1 N N N -3.075 64.936 19.763 10.246 -2.380 -0.558 H37 7L1 88 
7L1 H38 H38 H 0 1 N N N -0.947 64.993 16.946 7.361  -3.250 0.383  H38 7L1 89 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7L1 N45 C44 SING N N 1  
7L1 C23 N22 SING N N 2  
7L1 C23 C24 SING N N 3  
7L1 C44 N43 DOUB Y N 4  
7L1 C44 C39 SING Y N 5  
7L1 N22 C20 SING N N 6  
7L1 N43 C42 SING Y N 7  
7L1 C24 C25 SING N N 8  
7L1 C20 O21 DOUB N N 9  
7L1 C20 C18 SING N N 10 
7L1 O19 C18 SING N N 11 
7L1 C39 N38 SING Y N 12 
7L1 C39 C40 DOUB Y N 13 
7L1 O12 P10 DOUB N N 14 
7L1 C42 N41 DOUB Y N 15 
7L1 N38 C37 DOUB Y N 16 
7L1 C18 C15 SING N N 17 
7L1 O26 C25 DOUB N N 18 
7L1 C25 N27 SING N N 19 
7L1 C40 N41 SING Y N 20 
7L1 C40 N36 SING Y N 21 
7L1 O11 P10 SING N N 22 
7L1 P10 O13 SING N N 23 
7L1 P10 O09 SING N N 24 
7L1 C37 N36 SING Y N 25 
7L1 O13 C14 SING N N 26 
7L1 O51 P48 DOUB N N 27 
7L1 O50 P48 SING N N 28 
7L1 C15 C14 SING N N 29 
7L1 C15 C17 SING N N 30 
7L1 C15 C16 SING N N 31 
7L1 O08 P06 DOUB N N 32 
7L1 N36 C35 SING N N 33 
7L1 N27 C28 SING N N 34 
7L1 P48 O47 SING N N 35 
7L1 P48 O49 SING N N 36 
7L1 O47 C46 SING N N 37 
7L1 O09 P06 SING N N 38 
7L1 P06 O05 SING N N 39 
7L1 P06 O07 SING N N 40 
7L1 C46 C35 SING N N 41 
7L1 C46 C01 SING N N 42 
7L1 C28 C29 SING N N 43 
7L1 C35 O34 SING N N 44 
7L1 C29 S30 SING N N 45 
7L1 O05 C04 SING N N 46 
7L1 O34 C03 SING N N 47 
7L1 C01 C03 SING N N 48 
7L1 C01 O02 SING N N 49 
7L1 C04 C03 SING N N 50 
7L1 O33 C31 DOUB N N 51 
7L1 S30 C31 SING N N 52 
7L1 C31 C32 SING N N 53 
7L1 C17 H1  SING N N 54 
7L1 C17 H2  SING N N 55 
7L1 C17 H3  SING N N 56 
7L1 C24 H4  SING N N 57 
7L1 C24 H5  SING N N 58 
7L1 C28 H6  SING N N 59 
7L1 C28 H7  SING N N 60 
7L1 C01 H8  SING N N 61 
7L1 O02 H9  SING N N 62 
7L1 C03 H10 SING N N 63 
7L1 C04 H11 SING N N 64 
7L1 C04 H12 SING N N 65 
7L1 O07 H13 SING N N 66 
7L1 O11 H14 SING N N 67 
7L1 C14 H15 SING N N 68 
7L1 C14 H16 SING N N 69 
7L1 C16 H17 SING N N 70 
7L1 C16 H18 SING N N 71 
7L1 C16 H19 SING N N 72 
7L1 C18 H20 SING N N 73 
7L1 O19 H21 SING N N 74 
7L1 N22 H22 SING N N 75 
7L1 C23 H23 SING N N 76 
7L1 C23 H24 SING N N 77 
7L1 N27 H25 SING N N 78 
7L1 C29 H26 SING N N 79 
7L1 C29 H27 SING N N 80 
7L1 C32 H28 SING N N 81 
7L1 C32 H29 SING N N 82 
7L1 C32 H30 SING N N 83 
7L1 C35 H31 SING N N 84 
7L1 C37 H32 SING N N 85 
7L1 C42 H33 SING N N 86 
7L1 N45 H34 SING N N 87 
7L1 N45 H35 SING N N 88 
7L1 C46 H36 SING N N 89 
7L1 O49 H37 SING N N 90 
7L1 O50 H38 SING N N 91 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7L1 SMILES           ACDLabs              12.01 "C(COP(OP(OCC1C(O)C(C(O1)n2cnc3c2ncnc3N)OP(O)(O)=O)(O)=O)(O)=O)(C)(C)C(C(=O)NCCC(NCCSC(C)=O)=O)O" 
7L1 InChI            InChI                1.03  
;InChI=1S/C23H38N7O17P3S/c1-12(31)51-7-6-25-14(32)4-5-26-21(35)18(34)23(2,3)9-44-50(41,42)47-49(39,40)43-8-13-16(33)17(46-48(36,37)38)22(45-13)30-11-29-15-19(24)27-10-28-20(15)30/h10-11,13,16-18,22,33-34H,4-9H2,1-3H3,(H,25,32)(H,26,35)(H,39,40)(H,41,42)(H2,24,27,28)(H2,36,37,38)/t13-,16-,17-,18+,22-/m1/s1
;
7L1 InChIKey         InChI                1.03  MQSYUKPDTZCOHX-ZSJPKINUSA-N 
7L1 SMILES_CANONICAL CACTVS               3.385 "CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O[P](O)(O)=O)[C@@H]1O)n2cnc3c(N)ncnc23" 
7L1 SMILES           CACTVS               3.385 "CC(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O[P](O)(O)=O)[CH]1O)n2cnc3c(N)ncnc23" 
7L1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)OP(=O)(O)O)O)O" 
7L1 SMILES           "OpenEye OEToolkits" 2.0.6 "CC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)OP(=O)(O)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7L1 "SYSTEMATIC NAME" ACDLabs              12.01 
"S-{(3S,5R,9R)-1-[(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} ethanethioate" 
7L1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 
"~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] ethanethioate"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7L1 "Create component" 2016-11-07 RCSB 
7L1 "Initial release"  2018-08-01 RCSB 
# 
