data_7D1
#

_chem_comp.id                                   7D1
_chem_comp.name                                 "1,5-anhydro-2-deoxy-D-arabino-hexitol"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2~{R},3~{S},4~{R})-2-(hydroxymethyl)oxane-3,4-diol; 1,2-dideoxy-D-mannopyranose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-10-07
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       148.157
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    7D1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5M17
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  7D1  "(2~{R},3~{S},4~{R})-2-(hydroxymethyl)oxane-3,4-diol"  PDB  ?  
2  7D1  "1,2-dideoxy-D-mannopyranose"                          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7D1  O4   O4   O  0  1  N  N  N  1.401  23.987  4.008   0.344   2.113   0.261  O4   7D1   1  
7D1  C4   C4   C  0  1  N  N  S  2.754  24.444  4.146   0.387   0.776  -0.241  C4   7D1   2  
7D1  C5   C5   C  0  1  N  N  R  3.322  24.741  2.755  -0.859   0.016   0.221  C5   7D1   3  
7D1  C6   C6   C  0  1  N  N  N  2.651  25.896  2.022  -2.108   0.682  -0.361  C6   7D1   4  
7D1  O6   O6   O  0  1  N  N  N  2.862  27.130  2.733  -3.275   0.045   0.161  O6   7D1   5  
7D1  C3   C3   C  0  1  N  N  R  3.569  23.349  4.790   1.635   0.068   0.295  C3   7D1   6  
7D1  O3   O3   O  0  1  N  N  N  3.107  23.140  6.144   2.805   0.728  -0.191  O3   7D1   7  
7D1  C2   C2   C  0  1  N  N  N  5.040  23.733  4.791   1.630  -1.387  -0.185  C2   7D1   8  
7D1  C1   C1   C  0  1  N  N  N  5.500  24.055  3.384   0.335  -2.063   0.274  C1   7D1   9  
7D1  O5   O5   O  0  1  N  N  N  4.704  25.115  2.862  -0.786  -1.337  -0.234  O5   7D1  10  
7D1  H1   H1   H  0  1  N  N  N  1.040  23.800  4.867   1.107   2.652   0.010  H1   7D1  11  
7D1  H2   H2   H  0  1  N  N  N  2.799  25.354  4.763   0.420   0.796  -1.330  H2   7D1  12  
7D1  H3   H3   H  0  1  N  N  N  3.229  23.834  2.140  -0.912   0.031   1.309  H3   7D1  13  
7D1  H4   H4   H  0  1  N  N  N  1.571  25.700  1.948  -2.117   1.737  -0.087  H4   7D1  14  
7D1  H5   H5   H  0  1  N  N  N  3.078  25.982  1.012  -2.098   0.588  -1.447  H5   7D1  15  
7D1  H6   H6   H  0  1  N  N  N  2.439  27.841  2.266  -4.106   0.417  -0.165  H6   7D1  16  
7D1  H7   H7   H  0  1  N  N  N  3.445  22.424  4.208   1.628   0.091   1.385  H7   7D1  17  
7D1  H8   H8   H  0  1  N  N  N  3.619  22.451  6.551   3.634   0.331   0.110  H8   7D1  18  
7D1  H9   H9   H  0  1  N  N  N  5.634  22.894  5.184   1.687  -1.411  -1.274  H9   7D1  19  
7D1  H10  H10  H  0  1  N  N  N  5.184  24.616  5.431   2.486  -1.913   0.236  H10  7D1  20  
7D1  H11  H11  H  0  1  N  N  N  5.390  23.164  2.748   0.307  -3.086  -0.102  H11  7D1  21  
7D1  H12  H12  H  0  1  N  N  N  6.556  24.363  3.404   0.298  -2.075   1.363  H12  7D1  22  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7D1  C6  O6   SING  N  N   1  
7D1  C6  C5   SING  N  N   2  
7D1  C5  O5   SING  N  N   3  
7D1  C5  C4   SING  N  N   4  
7D1  O5  C1   SING  N  N   5  
7D1  C1  C2   SING  N  N   6  
7D1  O4  C4   SING  N  N   7  
7D1  C4  C3   SING  N  N   8  
7D1  C3  C2   SING  N  N   9  
7D1  C3  O3   SING  N  N  10  
7D1  O4  H1   SING  N  N  11  
7D1  C4  H2   SING  N  N  12  
7D1  C5  H3   SING  N  N  13  
7D1  C6  H4   SING  N  N  14  
7D1  C6  H5   SING  N  N  15  
7D1  O6  H6   SING  N  N  16  
7D1  C3  H7   SING  N  N  17  
7D1  O3  H8   SING  N  N  18  
7D1  C2  H9   SING  N  N  19  
7D1  C2  H10  SING  N  N  20  
7D1  C1  H11  SING  N  N  21  
7D1  C1  H12  SING  N  N  22  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7D1  InChI             InChI                 1.03   "InChI=1S/C6H12O4/c7-3-5-6(9)4(8)1-2-10-5/h4-9H,1-3H2/t4-,5-,6+/m1/s1"  
7D1  InChIKey          InChI                 1.03   QFHKFGOUFKUPNX-PBXRRBTRSA-N  
7D1  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1OCC[C@@H](O)[C@@H]1O"  
7D1  SMILES            CACTVS                3.385  "OC[CH]1OCC[CH](O)[CH]1O"  
7D1  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C1CO[C@@H]([C@H]([C@@H]1O)O)CO"  
7D1  SMILES            "OpenEye OEToolkits"  2.0.6  "C1COC(C(C1O)O)CO"  
#
_pdbx_chem_comp_identifier.comp_id          7D1
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{S},4~{R})-2-(hydroxymethyl)oxane-3,4-diol"
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
7D1  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
7D1  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
7D1  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7D1  "Create component"      2016-10-07  RCSB  
7D1  "Initial release"       2017-01-11  RCSB  
7D1  "Other modification"    2020-07-03  RCSB  
7D1  "Modify name"           2020-07-17  RCSB  
7D1  "Modify synonyms"       2020-07-17  RCSB  
7D1  "Modify internal type"  2020-07-17  RCSB  
7D1  "Modify linking type"   2020-07-17  RCSB  
##
