data_6V1
# 
_chem_comp.id                                    6V1 
_chem_comp.name                                  "(2~{R})-2-azanyl-3-[(3~{R})-1-ethyl-2,5-bis(oxidanylidene)pyrrolidin-3-yl]sulfanyl-propanoic acid" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C9 H14 N2 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               CYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-07-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        246.283 
_chem_comp.one_letter_code                       C 
_chem_comp.three_letter_code                     6V1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LF4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6V1 N   N1  N 0 1 N N N N N N 18.609 221.258 -9.945  -3.419 1.612  -0.670 N   6V1 1  
6V1 CA  C1  C 0 1 N N R N N N 19.197 220.569 -11.060 -2.957 0.219  -0.599 CA  6V1 2  
6V1 C   C2  C 0 1 N N N N N N 20.378 219.756 -10.590 -4.046 -0.641 -0.011 C   6V1 3  
6V1 O   O1  O 0 1 N N N N N N 20.974 220.125 -9.629  -4.932 -0.136 0.637  O   6V1 4  
6V1 CB  C3  C 0 1 N N N N N N 19.849 221.528 -12.119 -1.711 0.139  0.286  CB  6V1 5  
6V1 SG  S1  S 0 1 N N N N N N 18.655 222.772 -12.466 -0.401 1.175  -0.421 SG  6V1 6  
6V1 C1  C4  C 0 1 N N R N N N 18.751 222.726 -14.273 0.969  0.953  0.747  C1  6V1 7  
6V1 C2  C5  C 0 1 N N N N N N 18.030 221.525 -14.892 1.511  -0.458 0.671  C2  6V1 8  
6V1 N3  N2  N 0 1 N N N N N N 17.595 221.829 -16.141 2.794  -0.418 0.292  N3  6V1 9  
6V1 C4  C6  C 0 1 N N N N N N 17.429 223.155 -16.231 3.271  0.815  0.079  C4  6V1 10 
6V1 C5  C7  C 0 1 N N N N N N 18.164 223.886 -15.100 2.174  1.828  0.343  C5  6V1 11 
6V1 C6  C8  C 0 1 N N N N N N 17.369 220.943 -17.301 3.609  -1.623 0.124  C6  6V1 12 
6V1 O7  O2  O 0 1 N N N N N N 17.906 220.437 -14.353 0.882  -1.465 0.916  O7  6V1 13 
6V1 O8  O3  O 0 1 N N N N N N 16.726 223.693 -17.099 4.402  1.080  -0.269 O8  6V1 14 
6V1 C3  C9  C 0 1 N N N N N N 17.388 219.442 -17.092 3.487  -2.125 -1.316 C3  6V1 15 
6V1 O1  O4  O 0 1 N Y N N N N 20.829 218.801 -11.398 -4.032 -1.969 -0.208 O1  6V1 16 
6V1 H1  H1  H 0 1 N N N N N N 18.214 220.592 -9.312  -4.202 1.701  -1.300 H1  6V1 17 
6V1 H2  H2  H 0 1 N N N N N N 19.312 221.790 -9.473  -3.650 1.964  0.247  H2  6V1 18 
6V1 H4  H4  H 0 1 N N N N N N 18.463 219.919 -11.559 -2.715 -0.136 -1.600 H4  6V1 19 
6V1 H5  H5  H 0 1 N N N N N N 20.095 220.971 -13.035 -1.954 0.494  1.288  H5  6V1 20 
6V1 H6  H6  H 0 1 N N N N N N 20.763 221.982 -11.709 -1.369 -0.894 0.339  H6  6V1 21 
6V1 H7  H7  H 0 1 N N N N N N 19.823 222.645 -14.507 0.648  1.187  1.762  H7  6V1 22 
6V1 H8  H8  H 0 1 N N N N N N 18.960 224.533 -15.497 1.949  2.395  -0.560 H8  6V1 23 
6V1 H9  H9  H 0 1 N N N N N N 17.468 224.489 -14.499 2.456  2.496  1.157  H9  6V1 24 
6V1 H10 H10 H 0 1 N N N N N N 18.149 221.176 -18.041 4.652  -1.390 0.340  H10 6V1 25 
6V1 H11 H11 H 0 1 N N N N N N 16.382 221.199 -17.715 3.260  -2.396 0.809  H11 6V1 26 
6V1 H12 H12 H 0 1 N N N N N N 17.204 218.935 -18.051 2.445  -2.358 -1.533 H12 6V1 27 
6V1 H13 H13 H 0 1 N N N N N N 18.370 219.139 -16.700 3.836  -1.352 -2.001 H13 6V1 28 
6V1 H14 H14 H 0 1 N N N N N N 16.604 219.162 -16.373 4.094  -3.022 -1.441 H14 6V1 29 
6V1 H15 H15 H 0 1 N N N N N N 21.668 218.488 -11.081 -4.752 -2.479 0.189  H15 6V1 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6V1 C6 C3  SING N N 1  
6V1 C6 N3  SING N N 2  
6V1 O8 C4  DOUB N N 3  
6V1 C4 N3  SING N N 4  
6V1 C4 C5  SING N N 5  
6V1 N3 C2  SING N N 6  
6V1 C5 C1  SING N N 7  
6V1 C2 O7  DOUB N N 8  
6V1 C2 C1  SING N N 9  
6V1 C1 SG  SING N N 10 
6V1 SG CB  SING N N 11 
6V1 CB CA  SING N N 12 
6V1 CA C   SING N N 13 
6V1 CA N   SING N N 14 
6V1 C  O   DOUB N N 15 
6V1 C  O1  SING N N 16 
6V1 N  H1  SING N N 17 
6V1 N  H2  SING N N 18 
6V1 CA H4  SING N N 19 
6V1 CB H5  SING N N 20 
6V1 CB H6  SING N N 21 
6V1 C1 H7  SING N N 22 
6V1 C5 H8  SING N N 23 
6V1 C5 H9  SING N N 24 
6V1 C6 H10 SING N N 25 
6V1 C6 H11 SING N N 26 
6V1 C3 H12 SING N N 27 
6V1 C3 H13 SING N N 28 
6V1 C3 H14 SING N N 29 
6V1 O1 H15 SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6V1 InChI            InChI                1.03  "InChI=1S/C9H14N2O4S/c1-2-11-7(12)3-6(8(11)13)16-4-5(10)9(14)15/h5-6H,2-4,10H2,1H3,(H,14,15)/t5-,6+/m0/s1" 
6V1 InChIKey         InChI                1.03  RPPKKMNJEXCQNS-NTSWFWBYSA-N                                                                                
6V1 SMILES_CANONICAL CACTVS               3.385 "CCN1C(=O)C[C@@H](SC[C@H](N)C(O)=O)C1=O"                                                                   
6V1 SMILES           CACTVS               3.385 "CCN1C(=O)C[CH](SC[CH](N)C(O)=O)C1=O"                                                                      
6V1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CCN1C(=O)C[C@H](C1=O)SC[C@@H](C(=O)O)N"                                                                   
6V1 SMILES           "OpenEye OEToolkits" 2.0.5 "CCN1C(=O)CC(C1=O)SCC(C(=O)O)N"                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           6V1 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.5 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-azanyl-3-[(3~{R})-1-ethyl-2,5-bis(oxidanylidene)pyrrolidin-3-yl]sulfanyl-propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6V1 "Create component"   2016-07-01 EBI  
6V1 "Other modification" 2016-07-01 EBI  
6V1 "Initial release"    2016-08-17 RCSB 
6V1 "Other modification" 2018-11-10 EBI  
6V1 "Modify PCM"         2024-09-27 PDBE 
# 
