data_6L1
# 
_chem_comp.id                                    6L1 
_chem_comp.name                                  "5'-O-[(R)-{[(3S)-3-aminobutanoyl]oxy}(hydroxy)phosphoryl]adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H21 N6 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-04-26 
_chem_comp.pdbx_modified_date                    2017-03-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        432.326 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6L1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5JJQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6L1 C1  C4  C 0 1 Y N N -11.658 4.409 7.213  4.653  -0.648 0.395  C1  6L1 1  
6L1 C2  C5  C 0 1 Y N N -11.547 3.258 6.486  5.097  -1.702 -0.421 C2  6L1 2  
6L1 C3  C6  C 0 1 Y N N -12.668 2.583 6.166  6.363  -2.254 -0.162 C3  6L1 3  
6L1 C4  C8  C 0 1 Y N N -9.572  4.076 6.817  3.125  -1.131 -1.119 C4  6L1 4  
6L1 N1  N1  N 0 1 Y N N -13.867 3.002 6.532  7.078  -1.755 0.840  N1  6L1 5  
6L1 N2  N3  N 0 1 Y N N -12.836 4.883 7.618  5.441  -0.212 1.372  N2  6L1 6  
6L1 C5  CAA C 0 1 N N N -4.657  1.501 3.215  -8.490 -2.197 1.705  C5  6L1 7  
6L1 C6  CAW C 0 1 N N S -4.742  2.922 3.842  -7.617 -1.446 0.698  C6  6L1 8  
6L1 N3  NAC N 0 1 N N N -3.610  3.172 4.715  -7.615 -2.166 -0.582 N3  6L1 9  
6L1 C7  CAL C 0 1 N N N -5.984  3.086 4.653  -6.187 -1.352 1.233  C7  6L1 10 
6L1 C8  CAS C 0 1 N N N -5.967  4.562 5.133  -5.356 -0.507 0.302  C8  6L1 11 
6L1 O1  OAD O 0 1 N N N -6.955  5.263 5.049  -5.857 -0.029 -0.688 O1  6L1 12 
6L1 O2  OAQ O 0 1 N N N -4.809  5.085 5.564  -4.060 -0.286 0.572  O2  6L1 13 
6L1 P1  PBC P 0 1 N N N -4.800  6.508 6.379  -3.241 0.627  -0.471 P1  6L1 14 
6L1 O3  OAH O 0 1 N N N -4.569  7.732 5.331  -3.934 1.923  -0.642 O3  6L1 15 
6L1 O4  OAE O 0 1 N N N -3.637  6.424 7.336  -3.156 -0.127 -1.891 O4  6L1 16 
6L1 O5  O5* O 0 1 N N N -6.331  6.732 7.012  -1.754 0.882  0.091  O5  6L1 17 
6L1 C9  C5* C 0 1 N N N -6.562  6.680 8.414  -0.814 1.742  -0.556 C9  6L1 18 
6L1 C10 C4* C 0 1 N N R -8.067  6.891 8.721  0.493  1.758  0.238  C10 6L1 19 
6L1 O6  O4* O 0 1 N N N -9.027  6.812 7.678  1.163  0.484  0.128  O6  6L1 20 
6L1 C11 C3* C 0 1 N N S -8.627  5.911 9.746  1.481  2.777  -0.373 C11 6L1 21 
6L1 O7  O3* O 0 1 N N N -8.217  6.275 11.106 1.446  4.006  0.355  O7  6L1 22 
6L1 C12 C2* C 0 1 N N R -10.089 6.099 9.629  2.861  2.098  -0.224 C12 6L1 23 
6L1 O8  O2* O 0 1 N N N -10.325 7.319 10.232 3.720  2.888  0.601  O8  6L1 24 
6L1 C13 C1* C 0 1 N N R -10.283 6.222 8.201  2.544  0.750  0.460  C13 6L1 25 
6L1 N4  N9  N 0 1 Y N N -10.446 4.910 7.437  3.409  -0.307 -0.071 N4  6L1 26 
6L1 N5  N7  N 0 1 Y N N -10.240 3.061 6.236  4.119  -1.944 -1.327 N5  6L1 27 
6L1 C14 C2  C 0 1 Y N N -13.984 4.198 7.303  6.618  -0.763 1.581  C14 6L1 28 
6L1 N6  N6  N 0 1 N N N -12.602 1.488 5.458  6.853  -3.294 -0.933 N6  6L1 29 
6L1 H1  H1  H 0 1 N N N -8.500  4.207 6.793  2.213  -1.107 -1.697 H1  6L1 30 
6L1 H2  H2  H 0 1 N N N -3.732  1.414 2.626  -8.491 -1.663 2.655  H2  6L1 31 
6L1 H3  H3  H 0 1 N N N -4.653  0.747 4.016  -9.509 -2.264 1.324  H3  6L1 32 
6L1 H4  H4  H 0 1 N N N -5.526  1.337 2.560  -8.091 -3.201 1.854  H4  6L1 33 
6L1 H5  H5  H 0 1 N N N -4.747  3.659 3.025  -8.016 -0.442 0.550  H5  6L1 34 
6L1 H6  H6  H 0 1 N N N -3.686  4.089 5.106  -7.097 -1.657 -1.283 H6  6L1 35 
6L1 H7  H7  H 0 1 N N N -3.602  2.496 5.452  -7.249 -3.100 -0.470 H7  6L1 36 
6L1 H9  H9  H 0 1 N N N -6.875  2.891 4.038  -6.198 -0.897 2.224  H9  6L1 37 
6L1 H10 H10 H 0 1 N N N -5.976  2.401 5.513  -5.757 -2.352 1.298  H10 6L1 38 
6L1 H11 H11 H 0 1 N N N -3.007  7.105 7.130  -2.713 -0.986 -1.855 H11 6L1 39 
6L1 H12 H12 H 0 1 N N N -6.248  5.698 8.797  -0.623 1.377  -1.565 H12 6L1 40 
6L1 H13 H13 H 0 1 N N N -5.977  7.470 8.907  -1.221 2.752  -0.607 H13 6L1 41 
6L1 H14 H14 H 0 1 N N N -8.148  7.891 9.172  0.299  1.998  1.283  H14 6L1 42 
6L1 H15 H15 H 0 1 N N N -8.334  4.880 9.498  1.250  2.950  -1.424 H15 6L1 43 
6L1 H16 H16 H 0 1 N N N -8.578  5.650 11.724 2.047  4.682  0.014  H16 6L1 44 
6L1 H17 H17 H 0 1 N N N -10.655 5.264 10.068 3.315  1.936  -1.201 H17 6L1 45 
6L1 H18 H18 H 0 1 N N N -10.198 7.239 11.170 3.904  3.769  0.248  H18 6L1 46 
6L1 H19 H19 H 0 1 N N N -11.133 6.884 7.980  2.665  0.834  1.540  H19 6L1 47 
6L1 H20 H20 H 0 1 N N N -14.950 4.555 7.630  7.233  -0.388 2.386  H20 6L1 48 
6L1 H21 H21 H 0 1 N N N -13.524 1.133 5.305  6.321  -3.650 -1.662 H21 6L1 49 
6L1 H22 H22 H 0 1 N N N -12.171 1.686 4.578  7.728  -3.667 -0.744 H22 6L1 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6L1 C5  C6  SING N N 1  
6L1 C6  C7  SING N N 2  
6L1 C6  N3  SING N N 3  
6L1 C7  C8  SING N N 4  
6L1 O1  C8  DOUB N N 5  
6L1 C8  O2  SING N N 6  
6L1 O3  P1  DOUB N N 7  
6L1 N6  C3  SING N N 8  
6L1 O2  P1  SING N N 9  
6L1 C3  C2  DOUB Y N 10 
6L1 C3  N1  SING Y N 11 
6L1 N5  C2  SING Y N 12 
6L1 N5  C4  DOUB Y N 13 
6L1 P1  O5  SING N N 14 
6L1 P1  O4  SING N N 15 
6L1 C2  C1  SING Y N 16 
6L1 N1  C14 DOUB Y N 17 
6L1 C4  N4  SING Y N 18 
6L1 O5  C9  SING N N 19 
6L1 C1  N4  SING Y N 20 
6L1 C1  N2  DOUB Y N 21 
6L1 C14 N2  SING Y N 22 
6L1 N4  C13 SING N N 23 
6L1 O6  C13 SING N N 24 
6L1 O6  C10 SING N N 25 
6L1 C13 C12 SING N N 26 
6L1 C9  C10 SING N N 27 
6L1 C10 C11 SING N N 28 
6L1 C12 C11 SING N N 29 
6L1 C12 O8  SING N N 30 
6L1 C11 O7  SING N N 31 
6L1 C4  H1  SING N N 32 
6L1 C5  H2  SING N N 33 
6L1 C5  H3  SING N N 34 
6L1 C5  H4  SING N N 35 
6L1 C6  H5  SING N N 36 
6L1 N3  H6  SING N N 37 
6L1 N3  H7  SING N N 38 
6L1 C7  H9  SING N N 39 
6L1 C7  H10 SING N N 40 
6L1 O4  H11 SING N N 41 
6L1 C9  H12 SING N N 42 
6L1 C9  H13 SING N N 43 
6L1 C10 H14 SING N N 44 
6L1 C11 H15 SING N N 45 
6L1 O7  H16 SING N N 46 
6L1 C12 H17 SING N N 47 
6L1 O8  H18 SING N N 48 
6L1 C13 H19 SING N N 49 
6L1 C14 H20 SING N N 50 
6L1 N6  H21 SING N N 51 
6L1 N6  H22 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6L1 SMILES           ACDLabs              12.01 "c21n(cnc1c(ncn2)N)C3OC(COP(OC(CC(C)N)=O)(O)=O)C(O)C3O"                                                                                                                                        
6L1 InChI            InChI                1.03  "InChI=1S/C14H21N6O8P/c1-6(15)2-8(21)28-29(24,25)26-3-7-10(22)11(23)14(27-7)20-5-19-9-12(16)17-4-18-13(9)20/h4-7,10-11,14,22-23H,2-3,15H2,1H3,(H,24,25)(H2,16,17,18)/t6-,7+,10+,11+,14+/m0/s1" 
6L1 InChIKey         InChI                1.03  LUQUWKZWZFRYGL-LTOLZBHSSA-N                                                                                                                                                                    
6L1 SMILES_CANONICAL CACTVS               3.385 "C[C@H](N)CC(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"                                                                                                                   
6L1 SMILES           CACTVS               3.385 "C[CH](N)CC(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"                                                                                                                         
6L1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C[C@@H](CC(=O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N"                                                                                                                   
6L1 SMILES           "OpenEye OEToolkits" 2.0.4 "CC(CC(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N"                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6L1 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(R)-{[(3S)-3-aminobutanoyl]oxy}(hydroxy)phosphoryl]adenosine"                                                                    
6L1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (3~{S})-3-azanylbutanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6L1 "Create component" 2016-04-26 RCSB 
6L1 "Initial release"  2017-03-22 RCSB 
# 
